A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
13.5
nTPM
Monaco:
140.6
nTPM
Schmiedel:
51.9
TPM
MONOCYTES - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
13.5
HPA sample
nTPM
Classical monocyte nTPM: 13.5
Samples: 6
Max nTPM: 29.1
Min nTPM: 3.5
P10809_1003
29.1
P10809_1020
12.5
P10809_1039
3.5
P10809_1058
8.9
P10809_1080
12.9
P10809_1107
13.9
Intermediate monocyte nTPM: 13.0
Samples: 6
Max nTPM: 20.0
Min nTPM: 8.4
P10809_1004
20.0
P10809_1023
8.4
P10809_1042
14.7
P10809_1061
8.4
P10809_1081
12.5
P10809_1108
14.3
Non-classical monocyte nTPM: 12.2
Samples: 5
Max nTPM: 17.5
Min nTPM: 7.4
P10809_1005
17.5
P10809_1053
7.4
P10809_1072
15.7
P10809_1082
7.4
P10809_1109
13.2
MONOCYTES - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
140.6
Monaco sample
nTPM
Classical monocyte nTPM: 128.4
Samples: 4
Max nTPM: 180.2
Min nTPM: 93.4
RHH5313_R3680
115.8
RHH5221_R3593
180.2
RHH5250_R3622
124.1
RHH5279_R3651
93.4
Intermediate monocyte nTPM: 140.6
Samples: 4
Max nTPM: 169.3
Min nTPM: 124.0
RHH5314_R3681
124.0
RHH5222_R3594
169.3
RHH5251_R3623
129.0
RHH5280_R3652
140.1
Non-classical monocyte nTPM: 133.0
Samples: 4
Max nTPM: 191.8
Min nTPM: 99.0
RHH5315_R3682
118.2
RHH5223_R3595
191.8
RHH5252_R3624
122.8
RHH5281_R3653
99.0
MONOCYTES - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
51.9
Schmiedel sample id
TPM
Classical monocyte TPM: 51.9
Samples: 91
Max TPM: 85.4
Min TPM: 24.1
MONOCYTES_1
85.4
MONOCYTES_2
84.1
MONOCYTES_3
82.9
MONOCYTES_4
81.8
MONOCYTES_5
81.6
MONOCYTES_6
81.3
MONOCYTES_7
81.1
MONOCYTES_8
81.1
MONOCYTES_9
79.4
MONOCYTES_10
77.9
MONOCYTES_11
73.2
MONOCYTES_12
72.6
MONOCYTES_13
72.1
MONOCYTES_14
70.6
MONOCYTES_15
70.0
MONOCYTES_16
69.5
MONOCYTES_17
68.7
MONOCYTES_18
67.9
MONOCYTES_19
67.8
MONOCYTES_20
67.7
MONOCYTES_21
67.4
MONOCYTES_22
67.2
MONOCYTES_23
66.3
MONOCYTES_24
65.3
MONOCYTES_25
63.2
MONOCYTES_26
63.0
MONOCYTES_27
62.7
MONOCYTES_28
62.3
MONOCYTES_29
61.3
MONOCYTES_30
60.5
MONOCYTES_31
60.2
MONOCYTES_32
58.6
MONOCYTES_33
58.4
MONOCYTES_34
58.4
MONOCYTES_35
58.2
MONOCYTES_36
55.0
MONOCYTES_37
54.8
MONOCYTES_38
54.1
MONOCYTES_39
53.5
MONOCYTES_40
53.0
MONOCYTES_41
50.7
MONOCYTES_42
50.3
MONOCYTES_43
50.1
MONOCYTES_44
49.6
MONOCYTES_45
48.6
MONOCYTES_46
47.9
MONOCYTES_47
47.7
MONOCYTES_48
47.5
MONOCYTES_49
47.4
MONOCYTES_50
47.3
MONOCYTES_51
47.1
MONOCYTES_52
46.4
MONOCYTES_53
46.1
MONOCYTES_54
45.3
MONOCYTES_55
44.5
MONOCYTES_56
43.6
MONOCYTES_57
43.3
MONOCYTES_58
43.3
MONOCYTES_59
42.5
MONOCYTES_60
42.4
MONOCYTES_61
42.3
MONOCYTES_62
42.2
MONOCYTES_63
42.1
MONOCYTES_64
41.9
MONOCYTES_65
41.5
MONOCYTES_66
41.3
MONOCYTES_67
41.2
MONOCYTES_68
41.2
MONOCYTES_69
40.0
MONOCYTES_70
39.5
MONOCYTES_71
38.8
MONOCYTES_72
37.2
MONOCYTES_73
35.9
MONOCYTES_74
35.6
MONOCYTES_75
35.5
MONOCYTES_76
35.2
MONOCYTES_77
34.3
MONOCYTES_78
33.1
MONOCYTES_79
32.9
MONOCYTES_80
31.5
MONOCYTES_81
30.8
MONOCYTES_82
30.5
MONOCYTES_83
29.9
MONOCYTES_84
29.7
MONOCYTES_85
29.2
MONOCYTES_86
29.1
MONOCYTES_87
29.0
MONOCYTES_88
26.4
MONOCYTES_89
26.2
MONOCYTES_90
26.1
MONOCYTES_91
24.1
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Non-classical monocyte TPM: 48.4
Samples: 90
Max TPM: 90.6
Min TPM: 13.8
M2_1
90.6
M2_2
87.9
M2_3
84.1
M2_4
84.0
M2_5
82.8
M2_6
82.4
M2_7
81.3
M2_8
81.2
M2_9
80.2
M2_10
76.9
M2_11
76.2
M2_12
69.8
M2_13
69.7
M2_14
68.8
M2_15
68.3
M2_16
68.0
M2_17
67.9
M2_18
67.3
M2_19
65.5
M2_20
63.6
M2_21
63.1
M2_22
62.0
M2_23
61.2
M2_24
61.1
M2_25
60.8
M2_26
60.2
M2_27
59.8
M2_28
59.4
M2_29
58.7
M2_30
58.6
M2_31
57.6
M2_32
57.0
M2_33
56.9
M2_34
56.5
M2_35
55.2
M2_36
54.1
M2_37
53.9
M2_38
52.0
M2_39
50.1
M2_40
49.8
M2_41
49.4
M2_42
48.6
M2_43
48.2
M2_44
47.7
M2_45
47.2
M2_46
46.2
M2_47
44.7
M2_48
44.6
M2_49
44.1
M2_50
44.0
M2_51
43.7
M2_52
42.8
M2_53
42.3
M2_54
41.7
M2_55
41.7
M2_56
41.1
M2_57
41.1
M2_58
40.6
M2_59
40.5
M2_60
39.4
M2_61
39.3
M2_62
38.3
M2_63
38.0
M2_64
37.6
M2_65
37.5
M2_66
37.4
M2_67
37.2
M2_68
36.3
M2_69
36.2
M2_70
33.6
M2_71
29.8
M2_72
28.4
M2_73
27.5
M2_74
26.6
M2_75
26.0
M2_76
25.8
M2_77
25.3
M2_78
23.5
M2_79
23.4
M2_80
23.3
M2_81
22.6
M2_82
21.5
M2_83
21.1
M2_84
20.7
M2_85
17.7
M2_86
17.0
M2_87
16.2
M2_88
15.0
M2_89
14.8
M2_90
13.8
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