MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:93.4 nTPM
HPA Brain:108.1 nTPM
GTEx:93.4 nTPM
FANTOM5:158.9 Scaled Tags Per Million
Pig:92.4 nTPM
Mouse:54.0 nTPM
Allen mouse:5.1 Expression energy
BRAIN - SINGLE CELL RNA EXPRESSION

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 108.1
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 97.1
1870 Female, age 42, unknown 112.1
2666 Male, age 74, left hemisphere 101.8
1833 Male, age 53, unknown 101.5
2586 Male, age 75, left hemisphere 101.3
2828 Female, age 72, unknown 100.1
2019 Male, age 18, unknown 95.7
1830 Male, age 51, unknown 95.4
1827 Male, age 72, unknown 94.3
2411 Female, age 72, unknown 87.6
2219 Male, age 76, both hemispheres 81.6
Dorsal raphe nucleus
nTPM: 88.4
2750 Male, age 76, both hemispheres 100.0
2298 Female, age 72, unknown 90.2
1828 Male, age 53, unknown 86.2
2016 Female, age 72, unknown 83.8
2047 Male, age 72, unknown 81.9
Inferior colliculus
nTPM: 83.2
2849 Male, age 72, unknown 94.1
1848 Female, age 42, unknown 84.6
1890 Male, age 53, unknown 81.9
2097 Female, age 72, unknown 72.1
Median raphe nucleus
nTPM: 91.1
2220 Male, age 76, midline 91.1
Periaquaductal grey, anterior
nTPM: 86.0
2502 Female, age 75, unknown 86.2
1795 Male, age 51, unknown 86.1
1947 Male, age 18, unknown 85.7
Periaquaductal grey, dorsal
nTPM: 80.8
2850 Male, age 76, both hemispheres 93.5
1831 Male, age 72, unknown 81.3
2464 Female, age 72, unknown 74.3
1840 Male, age 53, unknown 74.0
Periaquaductal grey, lateral
nTPM: 83.2
2272 Male, age 74, both hemispheres 89.7
2053 Male, age 18, unknown 80.1
2140 Male, age 76, both hemispheres 79.8
Pretectal area
nTPM: 89.1
1815 Male, age 53, unknown 96.7
1817 Female, age 42, unknown 96.2
2007 Male, age 72, unknown 95.3
2667 Female, age 75, unknown 95.2
2407 Male, age 75, both hemispheres 91.1
2825 Male, age 18, unknown 89.4
1816 Male, age 51, unknown 86.7
2316 Male, age 76, right hemisphere 84.7
1944 Female, age 72, unknown 82.4
2224 Female, age 72, unknown 82.0
2273 Male, age 74, both hemispheres 80.0
Red nucleus
nTPM: 108.1
1865 Male, age 51, unknown 122.9
1904 Male, age 53, unknown 115.9
2725 Female, age 75, unknown 112.3
2769 Male, age 72, unknown 110.0
2785 Male, age 18, unknown 109.5
2227 Male, age 72, unknown 109.0
2823 Male, age 76, right hemisphere 107.0
2584 Male, age 75, left hemisphere 106.3
1821 Female, age 72, unknown 105.5
2503 Female, age 72, unknown 102.4
1954 Female, age 42, unknown 100.0
2588 Male, age 74, left hemisphere 96.7
Substantia nigra
nTPM: 86.5
2665 Male, age 74, both hemispheres 97.3
1889 Female, age 72, unknown 94.2
2699 Male, age 18, unknown 93.2
1851 Male, age 51, unknown 90.1
1916 Female, age 42, unknown 89.0
2590 Female, age 75, unknown 86.6
2409 Female, age 72, unknown 84.1
2583 Male, age 75, right hemisphere 83.2
1941 Male, age 53, unknown 80.5
2241 Male, age 72, unknown 66.4
Superior colliculus
nTPM: 94.0
1913 Female, age 42, unknown 106.6
1995 Male, age 72, unknown 105.6
2587 Male, age 74, left hemisphere 99.4
2664 Male, age 75, both hemispheres 95.7
1796 Male, age 53, unknown 94.4
1895 Male, age 76, right hemisphere 93.9
2261 Male, age 18, unknown 89.0
2087 Female, age 72, unknown 86.0
1839 Male, age 51, unknown 85.6
2668 Female, age 75, unknown 83.2
Ventral tegmental area
nTPM: 87.4
2223 Female, age 72, unknown 102.1
1915 Female, age 42, unknown 89.1
2218 Male, age 76, both hemispheres 86.1
2021 Male, age 53, unknown 84.8
1942 Male, age 51, unknown 83.0
2410 Female, age 72, unknown 79.5

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 93.4
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 93.4
Samples: 183

Max nTPM: 248.3
Min nTPM: 53.4
Std nTPM: 29.8
Median nTPM: 86.6
GTEX-1N5O9-0011-R2a-SM-G8LM1 60-69 years, male 248.3
GTEX-1LKK1-0011-R2b-SM-G8OLT 50-59 years, female 230.8
GTEX-ZE9C-0011-R2a-SM-4WKGH 60-69 years, male 194.4
GTEX-13NYB-0011-R2a-SM-5MR3C 40-49 years, male 190.4
GTEX-1R9K4-0011-R2b-SM-G8LLF 60-69 years, male 183.6
GTEX-1I19N-0011-R2b-SM-GPRYG 70-79 years, male 173.9
GTEX-1LB8K-0011-R2a-SM-EZ6MQ 50-59 years, male 165.6
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 157.5
GTEX-1NV5F-0011-R2a-SM-G8LME 60-69 years, female 154.0
GTEX-1HBPH-0011-R2a-SM-GQ1DS 40-49 years, female 150.3
GTEX-1RLM8-0011-R2a-SM-EZ6N4 50-59 years, male 149.8
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 158.9
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 158.9
FF:10158-103A5 76 years, female 158.9

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 92.4
Pig sample Sample description nTPM
Substantia nigra
nTPM: 86.7
Samples: 4

Max nTPM: 101.8
Min nTPM: 66.8
Sample A Female 90.4
Sample B Female 66.8
Sample C Male 87.7
Sample D Male 101.8
Midbrain
nTPM: 92.4
Samples: 4

Max nTPM: 144.1
Min nTPM: 64.2
Sample A Female 144.1
Sample B Female 81.5
Sample C Male 79.7
Sample D Male 64.2
Periaqueductal gray
nTPM: 69.6
Samples: 3

Max nTPM: 74.1
Min nTPM: 64.6
Sample B Female 70.1
Sample C Male 74.1
Sample D Male 64.6
Superior colliculi
nTPM: 86.1
Samples: 4

Max nTPM: 93.4
Min nTPM: 77.6
Sample A Female 93.4
Sample B Female 77.6
Sample C Male 88.3
Sample D Male 85.1

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 54.0
Mouse sample Sample description nTPM
Midbrain
nTPM: 54.0
Samples: 4

Max nTPM: 60.1
Min nTPM: 47.5
Sample A Male 56.7
Sample B Male 47.5
Sample C Female 51.7
Sample D Female 60.1

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 5.1
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 5.1
67870479 Antisense, RP_041018_01_D12, Mouse strain C57BL/6J (56 days, male) 8.5
71664144 Antisense, RP_050927_04_G06, Mouse strain C57BL/6J (56 days, male) 4.2
77413682 Antisense, RP_070205_01_C08, Mouse strain C57BL/6J (56 days, male) 2.7

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