MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:53.6 nTPM
HPA Brain:24.0 nTPM
GTEx:53.6 nTPM
FANTOM5:12.7 Scaled Tags Per Million
Pig:4.7 nTPM
Mouse:7.7 nTPM
Allen mouse:0.0 Expression energy
BRAIN - SINGLE CELL RNA EXPRESSION

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 24.0
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 19.4
2666 Male, age 74, left hemisphere 35.8
2828 Female, age 72, unknown 26.4
2019 Male, age 18, unknown 20.1
1870 Female, age 42, unknown 19.9
1827 Male, age 72, unknown 19.3
1830 Male, age 51, unknown 18.1
1833 Male, age 53, unknown 16.7
2411 Female, age 72, unknown 15.1
2586 Male, age 75, left hemisphere 12.7
2219 Male, age 76, both hemispheres 9.9
Dorsal raphe nucleus
nTPM: 19.8
1828 Male, age 53, unknown 24.1
2016 Female, age 72, unknown 20.2
2750 Male, age 76, both hemispheres 19.4
2298 Female, age 72, unknown 18.6
2047 Male, age 72, unknown 16.8
Inferior colliculus
nTPM: 17.1
2097 Female, age 72, unknown 19.0
1848 Female, age 42, unknown 18.1
2849 Male, age 72, unknown 15.9
1890 Male, age 53, unknown 15.3
Median raphe nucleus
nTPM: 17.0
2220 Male, age 76, midline 17.0
Periaquaductal grey, anterior
nTPM: 23.3
1947 Male, age 18, unknown 26.7
2502 Female, age 75, unknown 24.1
1795 Male, age 51, unknown 19.1
Periaquaductal grey, dorsal
nTPM: 18.4
1831 Male, age 72, unknown 21.8
2850 Male, age 76, both hemispheres 21.6
2464 Female, age 72, unknown 16.8
1840 Male, age 53, unknown 13.2
Periaquaductal grey, lateral
nTPM: 20.1
2140 Male, age 76, both hemispheres 24.0
2053 Male, age 18, unknown 20.9
2272 Male, age 74, both hemispheres 15.3
Pretectal area
nTPM: 18.0
1817 Female, age 42, unknown 25.9
2316 Male, age 76, right hemisphere 20.7
1815 Male, age 53, unknown 20.4
2667 Female, age 75, unknown 20.2
2007 Male, age 72, unknown 19.4
2825 Male, age 18, unknown 19.1
1816 Male, age 51, unknown 16.3
2224 Female, age 72, unknown 16.1
1944 Female, age 72, unknown 15.2
2407 Male, age 75, both hemispheres 12.9
2273 Male, age 74, both hemispheres 11.5
Red nucleus
nTPM: 24.0
1954 Female, age 42, unknown 31.5
2503 Female, age 72, unknown 29.1
1821 Female, age 72, unknown 28.6
1904 Male, age 53, unknown 27.0
1865 Male, age 51, unknown 25.8
2823 Male, age 76, right hemisphere 24.9
2769 Male, age 72, unknown 23.4
2227 Male, age 72, unknown 21.7
2725 Female, age 75, unknown 21.7
2588 Male, age 74, left hemisphere 19.7
2785 Male, age 18, unknown 19.1
2584 Male, age 75, left hemisphere 15.0
Substantia nigra
nTPM: 20.9
2665 Male, age 74, both hemispheres 32.9
1851 Male, age 51, unknown 26.4
2699 Male, age 18, unknown 23.7
1916 Female, age 42, unknown 20.6
2241 Male, age 72, unknown 19.0
2409 Female, age 72, unknown 17.9
1889 Female, age 72, unknown 17.7
2583 Male, age 75, right hemisphere 17.4
2590 Female, age 75, unknown 17.4
1941 Male, age 53, unknown 15.7
Superior colliculus
nTPM: 17.9
1796 Male, age 53, unknown 21.3
1913 Female, age 42, unknown 20.1
2087 Female, age 72, unknown 20.0
1895 Male, age 76, right hemisphere 19.2
2587 Male, age 74, left hemisphere 18.9
2668 Female, age 75, unknown 18.7
1995 Male, age 72, unknown 18.6
1839 Male, age 51, unknown 16.3
2664 Male, age 75, both hemispheres 13.3
2261 Male, age 18, unknown 12.7
Ventral tegmental area
nTPM: 19.5
1915 Female, age 42, unknown 22.0
2021 Male, age 53, unknown 21.2
2218 Male, age 76, both hemispheres 20.5
1942 Male, age 51, unknown 19.5
2410 Female, age 72, unknown 18.4
2223 Female, age 72, unknown 15.5

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 53.6
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 53.6
Samples: 183

Max nTPM: 296.7
Min nTPM: 13.9
Std nTPM: 38.4
Median nTPM: 46.3
GTEX-X4EP-0011-R2B-SM-3P625 60-69 years, female 296.7
GTEX-13PDP-0011-R2b-SM-5O9DH 60-69 years, male 294.0
GTEX-15G19-0011-R2b-SM-H6Q7S 60-69 years, male 289.1
GTEX-1RQEC-0011-R2b-SM-EY5ZT 60-69 years, male 163.4
GTEX-ZAJG-0011-R2a-SM-GNTAX 50-59 years, female 145.7
GTEX-1J1OQ-0011-R2b-SM-ARU88 40-49 years, female 116.5
GTEX-1F75B-0011-R2a-SM-ARL8I 50-59 years, male 115.7
GTEX-14BIM-0011-R2b-SM-69LQ6 60-69 years, female 111.1
GTEX-1IDJH-0011-R2a-SM-GPI9D 70-79 years, male 110.1
GTEX-1IL2U-0011-R2a-SM-ARU6V 60-69 years, male 101.1
GTEX-17HG3-0011-R2a-SM-7MGVX 30-39 years, female 100.7
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 12.7
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 12.7
FF:10158-103A5 76 years, female 12.7

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 4.7
Pig sample Sample description nTPM
Substantia nigra
nTPM: 3.9
Samples: 4

Max nTPM: 5.9
Min nTPM: 2.2
Sample A Female 4.6
Sample B Female 5.9
Sample C Male 2.2
Sample D Male 2.8
Midbrain
nTPM: 3.1
Samples: 4

Max nTPM: 5.3
Min nTPM: 1.7
Sample A Female 5.3
Sample B Female 1.7
Sample C Male 2.3
Sample D Male 3.2
Periaqueductal gray
nTPM: 1.7
Samples: 3

Max nTPM: 2.1
Min nTPM: 1.3
Sample B Female 1.6
Sample C Male 1.3
Sample D Male 2.1
Superior colliculi
nTPM: 4.7
Samples: 4

Max nTPM: 6.7
Min nTPM: 2.6
Sample A Female 6.7
Sample B Female 5.9
Sample C Male 2.6
Sample D Male 3.7

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 7.7
Mouse sample Sample description nTPM
Midbrain
nTPM: 7.7
Samples: 4

Max nTPM: 8.6
Min nTPM: 6.4
Sample A Male 8.6
Sample B Male 7.2
Sample C Female 6.4
Sample D Female 8.6

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 0.0
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.0
67787362 Antisense, RP_040920_01_B05, Mouse strain C57BL/6J (56 days, male) 0.1
69529430 Antisense, RP_050421_04_C08, Mouse strain C57BL/6J (56 days, male) 0.0

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