MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:25.6 nTPM
HPA Brain:72.5 nTPM
GTEx:25.6 nTPM
FANTOM5:35.6 Scaled Tags Per Million
Pig:17.7 nTPM
Mouse:13.7 nTPM
Allen mouse:3.4 Expression energy
BRAIN - SINGLE CELL RNA EXPRESSION

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 72.5
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 64.0
2586 Male, age 75, left hemisphere 103.7
2666 Male, age 74, left hemisphere 76.0
2828 Female, age 72, unknown 70.2
2219 Male, age 76, both hemispheres 62.7
1827 Male, age 72, unknown 61.3
2019 Male, age 18, unknown 58.2
1833 Male, age 53, unknown 55.4
1870 Female, age 42, unknown 53.5
1830 Male, age 51, unknown 52.3
2411 Female, age 72, unknown 46.6
Dorsal raphe nucleus
nTPM: 55.4
2298 Female, age 72, unknown 58.7
2016 Female, age 72, unknown 57.7
2047 Male, age 72, unknown 55.7
1828 Male, age 53, unknown 55.1
2750 Male, age 76, both hemispheres 49.5
Inferior colliculus
nTPM: 60.3
2849 Male, age 72, unknown 63.3
1890 Male, age 53, unknown 61.5
1848 Female, age 42, unknown 58.4
2097 Female, age 72, unknown 58.1
Median raphe nucleus
nTPM: 52.0
2220 Male, age 76, midline 52.0
Periaquaductal grey, anterior
nTPM: 72.5
2502 Female, age 75, unknown 74.8
1795 Male, age 51, unknown 72.9
1947 Male, age 18, unknown 69.8
Periaquaductal grey, dorsal
nTPM: 59.1
1831 Male, age 72, unknown 63.3
1840 Male, age 53, unknown 62.9
2850 Male, age 76, both hemispheres 55.2
2464 Female, age 72, unknown 54.9
Periaquaductal grey, lateral
nTPM: 57.5
2053 Male, age 18, unknown 60.8
2272 Male, age 74, both hemispheres 59.9
2140 Male, age 76, both hemispheres 51.9
Pretectal area
nTPM: 63.9
1816 Male, age 51, unknown 77.4
2007 Male, age 72, unknown 72.8
1944 Female, age 72, unknown 71.3
1815 Male, age 53, unknown 69.1
1817 Female, age 42, unknown 68.2
2407 Male, age 75, both hemispheres 67.2
2825 Male, age 18, unknown 61.2
2667 Female, age 75, unknown 58.4
2273 Male, age 74, both hemispheres 52.9
2316 Male, age 76, right hemisphere 52.2
2224 Female, age 72, unknown 51.8
Red nucleus
nTPM: 59.3
2584 Male, age 75, left hemisphere 75.4
2588 Male, age 74, left hemisphere 71.5
2785 Male, age 18, unknown 62.0
2769 Male, age 72, unknown 59.6
1904 Male, age 53, unknown 58.5
2227 Male, age 72, unknown 58.2
2823 Male, age 76, right hemisphere 56.2
2503 Female, age 72, unknown 55.7
1865 Male, age 51, unknown 55.5
1954 Female, age 42, unknown 55.0
2725 Female, age 75, unknown 54.9
1821 Female, age 72, unknown 49.0
Substantia nigra
nTPM: 59.8
2665 Male, age 74, both hemispheres 79.0
2583 Male, age 75, right hemisphere 68.9
1916 Female, age 42, unknown 66.8
1851 Male, age 51, unknown 62.1
1889 Female, age 72, unknown 61.7
2699 Male, age 18, unknown 60.3
2590 Female, age 75, unknown 57.0
1941 Male, age 53, unknown 53.7
2241 Male, age 72, unknown 46.0
2409 Female, age 72, unknown 42.1
Superior colliculus
nTPM: 65.8
2664 Male, age 75, both hemispheres 88.6
2668 Female, age 75, unknown 75.7
2087 Female, age 72, unknown 68.6
1796 Male, age 53, unknown 68.5
2261 Male, age 18, unknown 65.7
1995 Male, age 72, unknown 64.7
1913 Female, age 42, unknown 59.9
1839 Male, age 51, unknown 58.8
2587 Male, age 74, left hemisphere 55.3
1895 Male, age 76, right hemisphere 52.6
Ventral tegmental area
nTPM: 58.0
2218 Male, age 76, both hemispheres 63.2
1942 Male, age 51, unknown 62.7
2021 Male, age 53, unknown 57.9
1915 Female, age 42, unknown 57.1
2410 Female, age 72, unknown 54.4
2223 Female, age 72, unknown 52.9

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 25.6
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 25.6
Samples: 183

Max nTPM: 52.4
Min nTPM: 13.7
Std nTPM: 5.5
Median nTPM: 25.7
GTEX-1MJK2-0011-R2b-SM-EXUS5 50-59 years, male 52.4
GTEX-WL46-0011-R2A-SM-3LK6O 50-59 years, male 49.3
GTEX-1HSMO-0011-R2a-SM-CL553 60-69 years, male 45.2
GTEX-QVJO-0011-R2A-SM-2S1QK 60-69 years, female 44.4
GTEX-WVLH-0011-R2A-SM-3MJFJ 50-59 years, male 38.6
GTEX-1HT8W-0011-R2a-SM-CMKH9 30-39 years, male 34.6
GTEX-1N5O9-0011-R2a-SM-G8LM1 60-69 years, male 34.0
GTEX-13O3Q-0011-R2b-SM-5KM3K 50-59 years, male 33.6
GTEX-12WSD-0011-R2a-SM-5LZWB 60-69 years, female 33.3
GTEX-13NYS-0011-R2b-SM-5MR4G 60-69 years, male 33.3
GTEX-13PDP-0011-R2b-SM-5O9DH 60-69 years, male 33.2
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 35.6
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 35.6
FF:10158-103A5 76 years, female 35.6

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 17.7
Pig sample Sample description nTPM
Substantia nigra
nTPM: 16.1
Samples: 4

Max nTPM: 18.6
Min nTPM: 14.4
Sample A Female 15.7
Sample B Female 15.5
Sample C Male 18.6
Sample D Male 14.4
Midbrain
nTPM: 17.5
Samples: 4

Max nTPM: 21.7
Min nTPM: 12.4
Sample A Female 17.3
Sample B Female 12.4
Sample C Male 21.7
Sample D Male 18.4
Periaqueductal gray
nTPM: 16.8
Samples: 3

Max nTPM: 18.6
Min nTPM: 15.1
Sample B Female 15.1
Sample C Male 16.8
Sample D Male 18.6
Superior colliculi
nTPM: 17.7
Samples: 4

Max nTPM: 18.9
Min nTPM: 16.1
Sample A Female 16.1
Sample B Female 18.9
Sample C Male 17.9
Sample D Male 18.0

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 13.7
Mouse sample Sample description nTPM
Midbrain
nTPM: 13.7
Samples: 4

Max nTPM: 15.4
Min nTPM: 11.8
Sample A Male 15.4
Sample B Male 13.1
Sample C Female 11.8
Sample D Female 14.4

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 3.4
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 3.4
68799077 Antisense, RP_050217_02_A04, Mouse strain C57BL/6J (56 days, male) 3.4

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