MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:62.8 nTPM
HPA Brain:135.0 nTPM
GTEx:62.8 nTPM
FANTOM5:116.3 Scaled Tags Per Million
Pig:107.4 nTPM
Mouse:44.3 nTPM
Allen mouse:0.2 Expression energy
BRAIN - SINGLE CELL RNA EXPRESSION

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 135.0
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 105.7
2019 Male, age 18, unknown 147.7
1830 Male, age 51, unknown 126.0
1870 Female, age 42, unknown 122.2
1833 Male, age 53, unknown 121.3
2411 Female, age 72, unknown 111.6
2828 Female, age 72, unknown 99.1
2219 Male, age 76, both hemispheres 85.8
1827 Male, age 72, unknown 83.7
2666 Male, age 74, left hemisphere 80.1
2586 Male, age 75, left hemisphere 79.9
Dorsal raphe nucleus
nTPM: 96.8
2750 Male, age 76, both hemispheres 126.2
2016 Female, age 72, unknown 95.4
1828 Male, age 53, unknown 92.9
2298 Female, age 72, unknown 91.2
2047 Male, age 72, unknown 78.2
Inferior colliculus
nTPM: 85.4
1890 Male, age 53, unknown 95.3
2097 Female, age 72, unknown 84.5
1848 Female, age 42, unknown 84.1
2849 Male, age 72, unknown 77.6
Median raphe nucleus
nTPM: 81.9
2220 Male, age 76, midline 81.9
Periaquaductal grey, anterior
nTPM: 99.7
2502 Female, age 75, unknown 125.4
1795 Male, age 51, unknown 92.4
1947 Male, age 18, unknown 81.2
Periaquaductal grey, dorsal
nTPM: 84.1
2850 Male, age 76, both hemispheres 119.1
2464 Female, age 72, unknown 88.6
1831 Male, age 72, unknown 72.8
1840 Male, age 53, unknown 56.0
Periaquaductal grey, lateral
nTPM: 115.1
2272 Male, age 74, both hemispheres 142.7
2140 Male, age 76, both hemispheres 120.8
2053 Male, age 18, unknown 81.8
Pretectal area
nTPM: 87.9
2273 Male, age 74, both hemispheres 114.3
2667 Female, age 75, unknown 102.0
2007 Male, age 72, unknown 96.6
2316 Male, age 76, right hemisphere 94.5
1817 Female, age 42, unknown 94.2
1815 Male, age 53, unknown 93.1
2224 Female, age 72, unknown 85.3
2825 Male, age 18, unknown 81.7
2407 Male, age 75, both hemispheres 74.7
1944 Female, age 72, unknown 70.1
1816 Male, age 51, unknown 60.1
Red nucleus
nTPM: 135.0
2785 Male, age 18, unknown 166.1
1865 Male, age 51, unknown 161.0
2769 Male, age 72, unknown 159.7
2227 Male, age 72, unknown 157.8
1904 Male, age 53, unknown 148.3
2588 Male, age 74, left hemisphere 134.0
1821 Female, age 72, unknown 132.7
2503 Female, age 72, unknown 129.2
2823 Male, age 76, right hemisphere 125.2
1954 Female, age 42, unknown 125.1
2584 Male, age 75, left hemisphere 93.8
2725 Female, age 75, unknown 87.3
Substantia nigra
nTPM: 95.3
1851 Male, age 51, unknown 110.0
1941 Male, age 53, unknown 106.1
2590 Female, age 75, unknown 103.1
2699 Male, age 18, unknown 100.2
1916 Female, age 42, unknown 97.2
2409 Female, age 72, unknown 95.8
1889 Female, age 72, unknown 91.7
2665 Male, age 74, both hemispheres 86.6
2583 Male, age 75, right hemisphere 84.5
2241 Male, age 72, unknown 77.5
Superior colliculus
nTPM: 92.7
1995 Male, age 72, unknown 127.1
1913 Female, age 42, unknown 126.9
2587 Male, age 74, left hemisphere 110.7
1839 Male, age 51, unknown 92.7
1796 Male, age 53, unknown 85.0
1895 Male, age 76, right hemisphere 84.2
2668 Female, age 75, unknown 83.6
2261 Male, age 18, unknown 83.5
2087 Female, age 72, unknown 78.6
2664 Male, age 75, both hemispheres 55.2
Ventral tegmental area
nTPM: 105.0
2223 Female, age 72, unknown 144.5
2410 Female, age 72, unknown 117.1
2218 Male, age 76, both hemispheres 96.8
2021 Male, age 53, unknown 92.3
1915 Female, age 42, unknown 90.0
1942 Male, age 51, unknown 89.3

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 62.8
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 62.8
Samples: 183

Max nTPM: 227.2
Min nTPM: 29.9
Std nTPM: 26.8
Median nTPM: 57.4
GTEX-RN5K-0011-R2A-SM-GQ1CA 50-59 years, female 227.2
GTEX-X4XX-0011-R2A-SM-3P623 60-69 years, male 212.1
GTEX-YFC4-0011-R2a-SM-4V6DZ 40-49 years, female 210.2
GTEX-ZE9C-0011-R2a-SM-4WKGH 60-69 years, male 127.2
GTEX-13NYB-0011-R2a-SM-5MR3C 40-49 years, male 119.7
GTEX-1N5O9-0011-R2a-SM-G8LM1 60-69 years, male 116.2
GTEX-Q2AG-0011-R2A-SM-2HMIT 40-49 years, female 109.4
GTEX-NPJ7-0011-R2a-SM-2I3GF 60-69 years, female 106.4
GTEX-1JN1M-0011-R2b-SM-G9EPE 60-69 years, female 103.0
GTEX-1LKK1-0011-R2b-SM-G8OLT 50-59 years, female 102.3
GTEX-ZYY3-0011-R2a-SM-GNTB2 60-69 years, female 99.9
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 116.3
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 116.3
FF:10158-103A5 76 years, female 116.3

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 107.4
Pig sample Sample description nTPM
Substantia nigra
nTPM: 97.9
Samples: 4

Max nTPM: 113.9
Min nTPM: 79.1
Sample A Female 85.6
Sample B Female 112.8
Sample C Male 79.1
Sample D Male 113.9
Midbrain
nTPM: 93.3
Samples: 4

Max nTPM: 139.2
Min nTPM: 74.8
Sample A Female 139.2
Sample B Female 79.4
Sample C Male 79.7
Sample D Male 74.8
Periaqueductal gray
nTPM: 69.1
Samples: 3

Max nTPM: 73.0
Min nTPM: 66.7
Sample B Female 73.0
Sample C Male 66.7
Sample D Male 67.6
Superior colliculi
nTPM: 107.4
Samples: 4

Max nTPM: 133.2
Min nTPM: 89.6
Sample A Female 111.1
Sample B Female 133.2
Sample C Male 89.6
Sample D Male 95.7

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 44.3
Mouse sample Sample description nTPM
Midbrain
nTPM: 44.3
Samples: 4

Max nTPM: 46.8
Min nTPM: 40.8
Sample A Male 40.8
Sample B Male 43.4
Sample C Female 46.8
Sample D Female 46.2

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 0.2
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.2
68301533 Antisense, RP_041130_01_D07, Mouse strain C57BL/6J (56 days, male) 0.2

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