MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:119.3 nTPM
HPA Brain:357.3 nTPM
GTEx:119.3 nTPM
FANTOM5:180.9 Scaled Tags Per Million
Mouse:7.9 nTPM
Allen mouse:4.7 Expression energy
BRAIN - SINGLE CELL RNA EXPRESSION

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 357.3
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 253.9
2586 Male, age 75, left hemisphere 334.9
2828 Female, age 72, unknown 291.8
2666 Male, age 74, left hemisphere 275.1
2411 Female, age 72, unknown 256.3
1870 Female, age 42, unknown 247.1
1830 Male, age 51, unknown 241.7
1833 Male, age 53, unknown 240.4
1827 Male, age 72, unknown 229.8
2219 Male, age 76, both hemispheres 229.0
2019 Male, age 18, unknown 193.0
Dorsal raphe nucleus
nTPM: 259.2
2750 Male, age 76, both hemispheres 317.5
2298 Female, age 72, unknown 260.7
2016 Female, age 72, unknown 254.4
2047 Male, age 72, unknown 244.3
1828 Male, age 53, unknown 219.4
Inferior colliculus
nTPM: 241.1
2849 Male, age 72, unknown 269.0
2097 Female, age 72, unknown 252.6
1848 Female, age 42, unknown 243.1
1890 Male, age 53, unknown 199.5
Median raphe nucleus
nTPM: 246.6
2220 Male, age 76, midline 246.6
Periaquaductal grey, anterior
nTPM: 357.3
2502 Female, age 75, unknown 401.6
1795 Male, age 51, unknown 375.1
1947 Male, age 18, unknown 295.3
Periaquaductal grey, dorsal
nTPM: 235.7
2850 Male, age 76, both hemispheres 268.2
2464 Female, age 72, unknown 237.0
1840 Male, age 53, unknown 230.6
1831 Male, age 72, unknown 206.9
Periaquaductal grey, lateral
nTPM: 280.7
2140 Male, age 76, both hemispheres 309.3
2272 Male, age 74, both hemispheres 271.4
2053 Male, age 18, unknown 261.4
Pretectal area
nTPM: 259.7
2316 Male, age 76, right hemisphere 313.4
2224 Female, age 72, unknown 290.8
2825 Male, age 18, unknown 279.4
2007 Male, age 72, unknown 260.0
2407 Male, age 75, both hemispheres 258.8
2667 Female, age 75, unknown 257.8
2273 Male, age 74, both hemispheres 256.1
1816 Male, age 51, unknown 247.1
1815 Male, age 53, unknown 241.8
1817 Female, age 42, unknown 232.4
1944 Female, age 72, unknown 219.1
Red nucleus
nTPM: 231.4
2785 Male, age 18, unknown 286.2
2584 Male, age 75, left hemisphere 269.6
2227 Male, age 72, unknown 269.2
2769 Male, age 72, unknown 263.4
2503 Female, age 72, unknown 236.9
1904 Male, age 53, unknown 232.8
2588 Male, age 74, left hemisphere 227.6
2823 Male, age 76, right hemisphere 213.8
1865 Male, age 51, unknown 208.3
2725 Female, age 75, unknown 203.8
1954 Female, age 42, unknown 202.2
1821 Female, age 72, unknown 162.9
Substantia nigra
nTPM: 170.1
2583 Male, age 75, right hemisphere 230.5
1889 Female, age 72, unknown 202.5
1941 Male, age 53, unknown 186.7
1851 Male, age 51, unknown 170.8
2699 Male, age 18, unknown 168.5
2590 Female, age 75, unknown 167.2
2665 Male, age 74, both hemispheres 166.2
1916 Female, age 42, unknown 165.6
2241 Male, age 72, unknown 144.7
2409 Female, age 72, unknown 98.3
Superior colliculus
nTPM: 268.5
2664 Male, age 75, both hemispheres 337.1
1796 Male, age 53, unknown 329.6
2261 Male, age 18, unknown 323.8
1839 Male, age 51, unknown 266.1
2668 Female, age 75, unknown 261.8
1995 Male, age 72, unknown 260.0
1913 Female, age 42, unknown 259.8
2087 Female, age 72, unknown 227.2
2587 Male, age 74, left hemisphere 217.2
1895 Male, age 76, right hemisphere 201.8
Ventral tegmental area
nTPM: 231.2
2223 Female, age 72, unknown 261.9
2021 Male, age 53, unknown 258.8
1942 Male, age 51, unknown 251.3
2218 Male, age 76, both hemispheres 222.7
1915 Female, age 42, unknown 202.8
2410 Female, age 72, unknown 189.7

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 119.3
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 119.3
Samples: 183

Max nTPM: 478.5
Min nTPM: 39.6
Std nTPM: 54.7
Median nTPM: 108.2
GTEX-1LKK1-0011-R2b-SM-G8OLT 50-59 years, female 478.5
GTEX-1N5O9-0011-R2a-SM-G8LM1 60-69 years, male 329.2
GTEX-1JN1M-0011-R2b-SM-G9EPE 60-69 years, female 301.8
GTEX-1R9K4-0011-R2b-SM-G8LLF 60-69 years, male 238.8
GTEX-1PIIG-0011-R2b-SM-F648W 30-39 years, male 235.8
GTEX-1N2EF-0011-R2b-SM-F6482 60-69 years, male 231.8
GTEX-14C5O-0011-R2a-SM-5ZZV2 60-69 years, male 230.2
GTEX-16Z82-0011-R2b-SM-79OK9 60-69 years, male 211.9
GTEX-131XH-0011-R2b-SM-5DUVY 50-59 years, male 210.7
GTEX-1HBPH-0011-R2a-SM-GQ1DS 40-49 years, female 207.7
GTEX-ZAK1-0011-R2a-SM-GPRX1 50-59 years, female 204.0
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 180.9
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 180.9
FF:10158-103A5 76 years, female 180.9

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 7.9
Mouse sample Sample description nTPM
Midbrain
nTPM: 7.9
Samples: 4

Max nTPM: 12.1
Min nTPM: 5.8
Sample A Male 12.1
Sample B Male 7.3
Sample C Female 5.8
Sample D Female 6.4

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 4.7
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 4.7
606 Antisense, RP_040507_01_C09, Mouse strain C57BL/6J (56 days, male) 9.2
607 Antisense, RP_040507_01_C09, Mouse strain C57BL/6J (56 days, male) 7.9
608 Sense, RPS_Baylor_37008, Mouse strain C57BL/6J (56 days, male) 0.1

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