MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:65.1 nTPM
HPA Brain:63.8 nTPM
GTEx:65.1 nTPM
FANTOM5:41.8 Scaled Tags Per Million
Pig:52.3 nTPM
Mouse:35.7 nTPM
Allen mouse:11.1 Expression energy
BRAIN - SINGLE CELL RNA EXPRESSION

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 63.8
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 62.1
2586 Male, age 75, left hemisphere 74.6
2666 Male, age 74, left hemisphere 66.5
2019 Male, age 18, unknown 64.6
2828 Female, age 72, unknown 62.9
1827 Male, age 72, unknown 61.3
2411 Female, age 72, unknown 61.1
1870 Female, age 42, unknown 59.6
2219 Male, age 76, both hemispheres 59.1
1833 Male, age 53, unknown 56.0
1830 Male, age 51, unknown 54.9
Dorsal raphe nucleus
nTPM: 61.8
2047 Male, age 72, unknown 66.3
2298 Female, age 72, unknown 66.3
2750 Male, age 76, both hemispheres 63.4
1828 Male, age 53, unknown 61.2
2016 Female, age 72, unknown 51.8
Inferior colliculus
nTPM: 52.5
2849 Male, age 72, unknown 54.6
1848 Female, age 42, unknown 53.8
1890 Male, age 53, unknown 50.7
2097 Female, age 72, unknown 50.7
Median raphe nucleus
nTPM: 63.8
2220 Male, age 76, midline 63.8
Periaquaductal grey, anterior
nTPM: 62.3
1795 Male, age 51, unknown 65.1
1947 Male, age 18, unknown 63.0
2502 Female, age 75, unknown 58.8
Periaquaductal grey, dorsal
nTPM: 50.4
2850 Male, age 76, both hemispheres 52.2
1831 Male, age 72, unknown 51.2
1840 Male, age 53, unknown 50.2
2464 Female, age 72, unknown 48.0
Periaquaductal grey, lateral
nTPM: 52.1
2272 Male, age 74, both hemispheres 59.2
2053 Male, age 18, unknown 48.9
2140 Male, age 76, both hemispheres 48.2
Pretectal area
nTPM: 59.0
2007 Male, age 72, unknown 68.8
1817 Female, age 42, unknown 67.7
1944 Female, age 72, unknown 65.7
1816 Male, age 51, unknown 65.5
1815 Male, age 53, unknown 58.3
2224 Female, age 72, unknown 56.9
2667 Female, age 75, unknown 56.9
2273 Male, age 74, both hemispheres 56.0
2825 Male, age 18, unknown 54.1
2316 Male, age 76, right hemisphere 49.6
2407 Male, age 75, both hemispheres 49.3
Red nucleus
nTPM: 59.7
2785 Male, age 18, unknown 63.3
1821 Female, age 72, unknown 62.2
2503 Female, age 72, unknown 60.1
2584 Male, age 75, left hemisphere 60.1
2769 Male, age 72, unknown 60.1
2725 Female, age 75, unknown 59.9
1954 Female, age 42, unknown 59.1
2227 Male, age 72, unknown 58.7
1865 Male, age 51, unknown 58.6
1904 Male, age 53, unknown 58.4
2588 Male, age 74, left hemisphere 58.3
2823 Male, age 76, right hemisphere 57.0
Substantia nigra
nTPM: 62.9
1916 Female, age 42, unknown 84.1
1941 Male, age 53, unknown 71.9
1851 Male, age 51, unknown 71.8
2699 Male, age 18, unknown 63.7
1889 Female, age 72, unknown 62.4
2583 Male, age 75, right hemisphere 61.6
2665 Male, age 74, both hemispheres 61.6
2590 Female, age 75, unknown 55.1
2241 Male, age 72, unknown 50.8
2409 Female, age 72, unknown 46.5
Superior colliculus
nTPM: 57.5
2668 Female, age 75, unknown 70.0
1796 Male, age 53, unknown 62.9
2087 Female, age 72, unknown 58.4
2587 Male, age 74, left hemisphere 57.7
2261 Male, age 18, unknown 57.2
1913 Female, age 42, unknown 56.2
2664 Male, age 75, both hemispheres 54.7
1839 Male, age 51, unknown 54.6
1995 Male, age 72, unknown 53.2
1895 Male, age 76, right hemisphere 50.0
Ventral tegmental area
nTPM: 62.5
1915 Female, age 42, unknown 67.2
2218 Male, age 76, both hemispheres 67.0
2223 Female, age 72, unknown 63.6
2410 Female, age 72, unknown 63.6
2021 Male, age 53, unknown 58.0
1942 Male, age 51, unknown 55.4

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 65.1
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 65.1
Samples: 183

Max nTPM: 130.5
Min nTPM: 34.3
Std nTPM: 12.9
Median nTPM: 63.9
GTEX-1CB4J-0011-R2a-SM-9WG5N 60-69 years, male 130.5
GTEX-1O9I2-0011-R2b-SM-F3K53 50-59 years, male 115.0
GTEX-1H1ZS-0011-R2b-SM-CL54Q 70-79 years, male 110.7
GTEX-1LKK1-0011-R2b-SM-G8OLT 50-59 years, female 100.7
GTEX-14BIM-0011-R2b-SM-69LQ6 60-69 years, female 97.5
GTEX-1JN1M-0011-R2b-SM-G9EPE 60-69 years, female 95.4
GTEX-1N5O9-0011-R2a-SM-G8LM1 60-69 years, male 92.1
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 89.2
GTEX-12696-0011-R2b-SM-GHWPY 60-69 years, male 88.7
GTEX-1N2EF-0011-R2b-SM-F6482 60-69 years, male 87.0
GTEX-1PPGY-0011-R2b-SM-F33YW 60-69 years, male 85.6
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 41.8
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 41.8
FF:10158-103A5 76 years, female 41.8

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 52.3
Pig sample Sample description nTPM
Substantia nigra
nTPM: 45.5
Samples: 4

Max nTPM: 58.4
Min nTPM: 38.2
Sample A Female 58.4
Sample B Female 39.5
Sample C Male 45.8
Sample D Male 38.2
Midbrain
nTPM: 48.7
Samples: 4

Max nTPM: 57.5
Min nTPM: 41.9
Sample A Female 57.5
Sample B Female 41.9
Sample C Male 52.1
Sample D Male 43.3
Periaqueductal gray
nTPM: 40.0
Samples: 3

Max nTPM: 47.8
Min nTPM: 33.0
Sample B Female 39.3
Sample C Male 47.8
Sample D Male 33.0
Superior colliculi
nTPM: 52.3
Samples: 4

Max nTPM: 60.0
Min nTPM: 47.3
Sample A Female 60.0
Sample B Female 47.9
Sample C Male 54.1
Sample D Male 47.3

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 35.7
Mouse sample Sample description nTPM
Midbrain
nTPM: 35.7
Samples: 4

Max nTPM: 41.4
Min nTPM: 32.7
Sample A Male 41.4
Sample B Male 34.5
Sample C Female 32.7
Sample D Female 34.3

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 11.1
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 11.1
2019 Antisense, RP_040407_02_A07, Mouse strain C57BL/6J (56 days, male) 11.1
2020 Antisense, RP_040407_02_A07, Mouse strain C57BL/6J (56 days, male) 1.2

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