MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:152.7 nTPM
HPA Brain:69.4 nTPM
GTEx:152.7 nTPM
FANTOM5:96.3 Scaled Tags Per Million
Pig:81.1 nTPM
Mouse:178.8 nTPM
Allen mouse:7.8 Expression energy
BRAIN - SINGLE CELL RNA EXPRESSION

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 69.4
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 62.3
2411 Female, age 72, unknown 69.7
1870 Female, age 42, unknown 69.4
2019 Male, age 18, unknown 68.3
2828 Female, age 72, unknown 65.5
1827 Male, age 72, unknown 65.4
1833 Male, age 53, unknown 62.2
1830 Male, age 51, unknown 62.0
2219 Male, age 76, both hemispheres 54.9
2666 Male, age 74, left hemisphere 54.7
2586 Male, age 75, left hemisphere 50.8
Dorsal raphe nucleus
nTPM: 62.4
2298 Female, age 72, unknown 67.2
2750 Male, age 76, both hemispheres 63.0
2016 Female, age 72, unknown 62.3
1828 Male, age 53, unknown 61.2
2047 Male, age 72, unknown 58.4
Inferior colliculus
nTPM: 60.6
2097 Female, age 72, unknown 62.3
1890 Male, age 53, unknown 61.6
2849 Male, age 72, unknown 59.5
1848 Female, age 42, unknown 58.9
Median raphe nucleus
nTPM: 67.0
2220 Male, age 76, midline 67.0
Periaquaductal grey, anterior
nTPM: 60.4
1795 Male, age 51, unknown 62.9
2502 Female, age 75, unknown 59.3
1947 Male, age 18, unknown 59.0
Periaquaductal grey, dorsal
nTPM: 59.3
2850 Male, age 76, both hemispheres 67.5
1840 Male, age 53, unknown 57.8
1831 Male, age 72, unknown 56.1
2464 Female, age 72, unknown 55.7
Periaquaductal grey, lateral
nTPM: 65.3
2272 Male, age 74, both hemispheres 69.9
2140 Male, age 76, both hemispheres 67.2
2053 Male, age 18, unknown 58.7
Pretectal area
nTPM: 64.4
2273 Male, age 74, both hemispheres 74.1
1817 Female, age 42, unknown 73.2
2007 Male, age 72, unknown 70.1
1815 Male, age 53, unknown 69.4
1944 Female, age 72, unknown 68.6
1816 Male, age 51, unknown 62.4
2224 Female, age 72, unknown 62.2
2667 Female, age 75, unknown 60.3
2316 Male, age 76, right hemisphere 58.0
2825 Male, age 18, unknown 56.3
2407 Male, age 75, both hemispheres 54.5
Red nucleus
nTPM: 69.4
2503 Female, age 72, unknown 79.8
2725 Female, age 75, unknown 77.9
2785 Male, age 18, unknown 72.8
1865 Male, age 51, unknown 72.4
1904 Male, age 53, unknown 70.3
1954 Female, age 42, unknown 69.6
2769 Male, age 72, unknown 69.6
2227 Male, age 72, unknown 68.3
1821 Female, age 72, unknown 68.0
2823 Male, age 76, right hemisphere 67.9
2588 Male, age 74, left hemisphere 64.9
2584 Male, age 75, left hemisphere 51.4
Substantia nigra
nTPM: 66.6
1916 Female, age 42, unknown 77.8
2409 Female, age 72, unknown 73.6
1851 Male, age 51, unknown 71.5
2699 Male, age 18, unknown 71.1
1889 Female, age 72, unknown 68.6
1941 Male, age 53, unknown 66.5
2241 Male, age 72, unknown 61.0
2590 Female, age 75, unknown 60.6
2583 Male, age 75, right hemisphere 59.2
2665 Male, age 74, both hemispheres 56.4
Superior colliculus
nTPM: 62.0
2587 Male, age 74, left hemisphere 71.2
1913 Female, age 42, unknown 70.2
1995 Male, age 72, unknown 66.6
2668 Female, age 75, unknown 64.6
2261 Male, age 18, unknown 63.8
1796 Male, age 53, unknown 63.5
2087 Female, age 72, unknown 61.5
1839 Male, age 51, unknown 57.5
1895 Male, age 76, right hemisphere 55.6
2664 Male, age 75, both hemispheres 45.2
Ventral tegmental area
nTPM: 66.4
2410 Female, age 72, unknown 73.0
1915 Female, age 42, unknown 71.1
2218 Male, age 76, both hemispheres 67.0
2223 Female, age 72, unknown 66.6
1942 Male, age 51, unknown 61.7
2021 Male, age 53, unknown 59.2

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 152.7
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 152.7
Samples: 183

Max nTPM: 282.4
Min nTPM: 86.4
Std nTPM: 34.7
Median nTPM: 146.4
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 282.4
GTEX-1LKK1-0011-R2b-SM-G8OLT 50-59 years, female 280.9
GTEX-1N5O9-0011-R2a-SM-G8LM1 60-69 years, male 251.3
GTEX-1HBPH-0011-R2a-SM-GQ1DS 40-49 years, female 242.9
GTEX-1117F-0011-R2b-SM-GI4VL 60-69 years, female 238.9
GTEX-1O9I2-0011-R2b-SM-F3K53 50-59 years, male 237.8
GTEX-1H1ZS-0011-R2b-SM-CL54Q 70-79 years, male 232.1
GTEX-1RLM8-0011-R2a-SM-EZ6N4 50-59 years, male 230.1
GTEX-1LVAO-0011-R2a-SM-EYYX1 60-69 years, male 229.5
GTEX-1IGQW-0011-R2b-SM-D4P26 60-69 years, male 228.7
GTEX-1R9K4-0011-R2b-SM-G8LLF 60-69 years, male 224.9
Show allShow less

MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 96.3
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 96.3
FF:10158-103A5 76 years, female 96.3

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 81.1
Pig sample Sample description nTPM
Substantia nigra
nTPM: 74.3
Samples: 4

Max nTPM: 95.6
Min nTPM: 60.9
Sample A Female 95.6
Sample B Female 60.9
Sample C Male 73.8
Sample D Male 66.8
Midbrain
nTPM: 81.1
Samples: 4

Max nTPM: 121.6
Min nTPM: 58.4
Sample A Female 121.6
Sample B Female 69.1
Sample C Male 75.4
Sample D Male 58.4
Periaqueductal gray
nTPM: 66.1
Samples: 3

Max nTPM: 75.9
Min nTPM: 58.7
Sample B Female 63.8
Sample C Male 75.9
Sample D Male 58.7
Superior colliculi
nTPM: 77.2
Samples: 4

Max nTPM: 92.7
Min nTPM: 71.4
Sample A Female 92.7
Sample B Female 73.0
Sample C Male 71.7
Sample D Male 71.4

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 178.8
Mouse sample Sample description nTPM
Midbrain
nTPM: 178.8
Samples: 4

Max nTPM: 193.5
Min nTPM: 167.2
Sample A Male 193.5
Sample B Male 175.1
Sample C Female 167.2
Sample D Female 179.5

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 7.8
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 7.8
76097722 Antisense, RP_060626_01_D06, Mouse strain C57BL/6J (56 days, male) 7.8

Contact

The Project

The Human Protein Atlas

KAW logo The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.

contact@proteinatlas.org
GCBR logo Elixir core logo SciLifeLab logo Uppsala university logo KI logo KTH logo