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  • ATP5IF1
BRAIN AMYGDALA Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS
MEDULLA OBLONGATA MIDBRAIN OLFACTORY BULB PONS SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
Amygdala
Brain methods
AMYGDALA - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.

Scroll down to view mRNA expression data in more detail.

Consensus:405.5 nTPM
HPA Brain:39.7 nTPM
GTEx:405.5 nTPM
FANTOM5:617.0 Scaled Tags Per Million
Pig:144.2 nTPM
Mouse:711.7 nTPM
Allen mouse:14.3 Expression energy
BRAIN - SINGLE CELL RNA EXPRESSION
Explore single cell type data

AMYGDALA - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

39.7
Sample id Sample description nTPM
Amygdala
nTPM: 33.4
2814 Male, age 76, right hemisphere 40.9
1987 Female, age 91, left hemisphere 33.8
2517 Female, age 94, left hemisphere 31.3
2514 Male, age 75, right hemisphere 30.8
2695 Female, age 67, right hemisphere 30.4
Basal amygdala
nTPM: 37.9
2243 Female, age 91, right hemisphere 52.9
1955 Male, age 76, both hemispheres 39.9
2110 Male, age 80, left hemisphere 37.2
2685 Female, age 94, left hemisphere 35.5
2609 Male, age 75, right hemisphere 33.8
2827 Female, age 67, right hemisphere 28.1
Central amygdala
nTPM: 36.2
1905 Male, age 76, both hemispheres 42.3
2701 Female, age 91, right hemisphere 41.2
2239 Male, age 80, left hemisphere 39.1
2826 Female, age 94, left hemisphere 29.5
2515 Male, age 75, right hemisphere 28.7
Corticomedial amygdala
nTPM: 39.7
2242 Female, age 91, right hemisphere 44.3
2829 Male, age 80, left hemisphere 44.1
2429 Female, age 94, left hemisphere 40.0
2240 Male, age 76, both hemispheres 39.2
2535 Female, age 67, right hemisphere 37.5
2428 Male, age 75, right hemisphere 33.0
Lateral amygdala
nTPM: 29.9
1883 Male, age 76, both hemispheres 43.2
2255 Female, age 91, right hemisphere 32.3
2534 Female, age 94, left hemisphere 29.6
2516 Male, age 75, right hemisphere 28.5
2830 Female, age 67, right hemisphere 23.2
2256 Male, age 80, left hemisphere 22.5

AMYGDALA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

405.5
GTEx sample id Sample description nTPM
Brain - Amygdala
Average nTPM: 405.5
Samples: 181

Max nTPM: 1331.5
Min nTPM: 166.8
Std nTPM: 175.2
Median nTPM: 378.3
GTEX-1JMQJ-0011-R4b-SM-EXUT8 50-59 years, male 1331.5
GTEX-14JG1-0011-R4b-SM-62LEB 40-49 years, male 1185.3
GTEX-1F75A-0011-R4a-SM-ARL8J 50-59 years, male 1057.3
GTEX-17HG3-0011-R4a-SM-7IGLL 30-39 years, female 922.2
GTEX-14JIY-0011-R4b-SM-5ZZV7 60-69 years, male 887.2
GTEX-11DYG-0011-R4b-SM-GJ3RG 60-69 years, male 744.7
GTEX-1LVAO-0011-R4a-SM-EXURO 60-69 years, male 743.6
GTEX-111FC-0011-R4a-SM-GIN8K 60-69 years, male 715.5
GTEX-1IY9M-0011-R4a-SM-C1YQ2 60-69 years, male 715.1
GTEX-14BMV-0011-R4a-SM-H6Q7P 50-59 years, male 704.9
GTEX-1PWST-0011-R4a-SM-F2T9X 70-79 years, male 690.8
GTEX-16YQH-0011-R4a-SM-7EPGI 30-39 years, male 651.2
GTEX-1B8L1-0011-R4a-SM-7EWFJ 60-69 years, male 646.7
GTEX-11PRG-0011-R4a-SM-DNZZR 50-59 years, male 620.6
GTEX-11OF3-0011-R4a-SM-GJ3RB 60-69 years, male 601.3
GTEX-11NV4-0011-R4a-SM-GI4XC 60-69 years, male 597.0
GTEX-1F7RK-0011-R4b-SM-9QEI7 20-29 years, female 586.0
GTEX-14E7W-0011-R4b-SM-62LEA 70-79 years, male 585.9
GTEX-13VXU-0011-R4b-SM-5O9CI 50-59 years, male 584.3
GTEX-13N1W-0011-R4a-SM-5MR52 70-79 years, male 582.1
GTEX-14JFF-0011-R4a-SM-5ZZV5 60-69 years, male 581.3
GTEX-1ICLZ-0011-R4a-SM-CMKHL 60-69 years, male 577.1
GTEX-1C6WA-0011-R4a-SM-9QEH2 60-69 years, male 569.1
GTEX-17EVP-0011-R4a-SM-79OML 40-49 years, male 566.1
GTEX-117XS-0011-R4b-SM-GJ3PR 60-69 years, male 556.9
GTEX-11DXY-0011-R4b-SM-GI4VR 60-69 years, male 555.4
GTEX-1OJC4-0011-R4a-SM-F3K54 50-59 years, female 550.9
GTEX-WVLH-0011-R4A-SM-3MJFS 50-59 years, male 547.3
GTEX-13SLX-0011-R4a-SM-5O9BJ 50-59 years, female 546.8
GTEX-ZAB4-0011-R4a-SM-4SOKB 40-49 years, male 544.1
GTEX-1RQEC-0011-R4b-SM-F342C 60-69 years, male 542.4
GTEX-15RJE-0011-R4a-SM-H7OH4 40-49 years, male 536.8
GTEX-15EO6-0011-R4a-SM-7KUKZ 50-59 years, male 536.0
GTEX-12WSC-0011-R4a-SM-H6Q8M 50-59 years, male 528.3
GTEX-WZTO-0011-R4A-SM-3NMC7 40-49 years, male 527.9
GTEX-ZVZQ-0011-R4b-SM-57WCZ 60-69 years, female 525.7
GTEX-13O3Q-0011-R4a-SM-5P9H2 50-59 years, male 521.9
GTEX-131YS-0011-R4a-SM-5DUVL 60-69 years, female 516.5
GTEX-TSE9-0011-R4A-SM-3DB7H 60-69 years, female 514.0
GTEX-1HCU6-0011-R4b-SM-ARU74 60-69 years, female 512.7
GTEX-1LVA9-0011-R4a-SM-F2TA2 50-59 years, male 509.6
GTEX-15SHU-0011-R4b-SM-7IGLC 40-49 years, female 507.9
GTEX-145LS-0011-R4b-SM-5S2UT 60-69 years, female 507.4
GTEX-1PIIG-0011-R4a-SM-F2TAQ 30-39 years, male 504.8
GTEX-13O3O-0011-R4b-SM-5KM3F 60-69 years, female 502.4
GTEX-1313W-0011-R4b-SM-5KLZV 50-59 years, female 499.7
GTEX-15DYW-0011-R4a-SM-6M46V 60-69 years, female 487.6
GTEX-1F6IF-0011-R4b-SM-CKZNJ 60-69 years, male 482.4
GTEX-1P4AB-0011-R4b-SM-F2T9S 50-59 years, male 479.0
GTEX-14ASI-0011-R4a-SM-69LQ4 60-69 years, male 477.5
GTEX-13NYB-0011-R4b-SM-9QEGJ 40-49 years, male 473.1
GTEX-XLM4-0011-R4B-SM-4AT5C 60-69 years, male 470.1
GTEX-147F4-0011-R4b-SM-GJ3R4 50-59 years, male 463.2
GTEX-131XH-0011-R4b-SM-5DUWB 50-59 years, male 456.9
GTEX-1F48J-0011-R4b-SM-9OSVX 50-59 years, female 455.2
GTEX-1E1VI-0011-R4b-SM-9QEHV 50-59 years, male 455.1
GTEX-PVOW-0011-R4A-SM-H6Q8O 40-49 years, male 450.1
GTEX-1EMGI-0011-R4b-SM-CJI2D 60-69 years, male 446.2
GTEX-1LSVX-0011-R4b-SM-EXURP 60-69 years, male 444.2
GTEX-14C5O-0011-R4b-SM-G9ERF 60-69 years, male 440.7
GTEX-1H3NZ-0011-R4a-SM-CL54T 60-69 years, male 438.6
GTEX-1A3MX-0011-R4b-SM-7EWFK 60-69 years, male 437.6
GTEX-1AX9I-0011-R4b-SM-7EPIB 60-69 years, male 437.6
GTEX-12ZZY-0011-R4a-SM-GIN9F 60-69 years, male 437.0
GTEX-12WSF-0011-R4b-SM-5HL88 70-79 years, male 433.1
GTEX-1O9I2-0011-R4b-SM-F3K4K 50-59 years, male 431.5
GTEX-12WSH-0011-R4a-SM-5GU6K 50-59 years, male 431.1
GTEX-147GR-0011-R4a-SM-5S2V2 60-69 years, male 426.5
GTEX-1HFI6-0011-R4b-SM-A96RT 40-49 years, male 424.7
GTEX-11GS4-0011-R4a-SM-GJ3RJ 60-69 years, male 420.2
GTEX-YFC4-0011-R4a-SM-4RGLQ 40-49 years, female 418.9
GTEX-1GN73-0011-R4b-SM-9QEIK 60-69 years, male 418.8
GTEX-13FHO-0011-R4b-SM-H6611 60-69 years, male 409.6
GTEX-1CB4G-0011-R4b-SM-CJI28 60-69 years, male 409.4
GTEX-13X6J-0011-R4b-SM-5P9K4 50-59 years, male 406.3
GTEX-1JMOU-0011-R4b-SM-EY5ZL 60-69 years, female 404.1
GTEX-1N2EF-0011-R4a-SM-F341F 60-69 years, male 402.9
GTEX-1HBPH-0011-R4a-SM-A96RX 40-49 years, female 402.0
GTEX-11NUK-0011-R4a-SM-DO12B 50-59 years, male 399.6
GTEX-11ZU8-0011-R4a-SM-5BC6Y 60-69 years, male 399.6
GTEX-1MJK2-0011-R4a-SM-F3426 50-59 years, male 396.4
GTEX-1KWVE-0011-R4a-SM-F3K5X 30-39 years, male 394.8
GTEX-1GMR8-0011-R4a-SM-9OSX1 50-59 years, female 394.7
GTEX-1H1ZS-0011-R4b-SM-CKZO7 70-79 years, male 391.4
GTEX-1399T-0011-R4b-SM-5DUVX 60-69 years, male 390.8
GTEX-1B996-0011-R4b-SM-9OSVO 60-69 years, male 387.8
GTEX-S7SE-0011-R4A-SM-2XCDB 50-59 years, male 384.4
GTEX-1PPGY-0011-R4a-SM-F3K4F 60-69 years, male 384.0
GTEX-1JMLX-0011-R4a-SM-EY5YJ 50-59 years, male 381.8
GTEX-Q2AG-0011-R4A-SM-2HMKA 40-49 years, female 381.3
GTEX-139T8-0011-R4a-SM-5HL54 60-69 years, male 378.3
GTEX-1I1GR-0011-R4a-SM-CMKHC 60-69 years, male 373.5
GTEX-13112-0011-R4b-SM-5DUXL 50-59 years, male 371.8
GTEX-1GTWX-0011-R4a-SM-C1YQI 60-69 years, male 370.5
GTEX-14BIM-0011-R4b-SM-5S2RK 60-69 years, female 370.3
GTEX-1HB9E-0011-R4b-SM-ARZLS 50-59 years, male 370.2
GTEX-13FLV-0011-R4a-SM-5LZYU 50-59 years, male 366.6
GTEX-RNOR-0011-R4A-SM-3GAD3 50-59 years, female 362.0
GTEX-NL4W-0011-R4a-SM-2I5GZ 50-59 years, male 358.0
GTEX-1HBPI-0011-R4a-SM-CJI3K 50-59 years, male 353.1
GTEX-11ONC-0011-R4b-SM-DO93H 60-69 years, male 353.0
GTEX-1JJ6O-0011-R4a-SM-EY5YM 60-69 years, male 352.9
GTEX-15ER7-0011-R4a-SM-6M46S 20-29 years, female 349.6
GTEX-12WSD-0011-R4b-SM-5LZUA 60-69 years, female 348.1
GTEX-1GF9W-0011-R4a-SM-CE6RH 60-69 years, male 343.2
GTEX-11GSO-0011-R4b-SM-GJ3R8 60-69 years, male 343.0
GTEX-1RDX4-0011-R4b-SM-F3K43 50-59 years, female 340.3
GTEX-QVJO-0011-R4A-SM-2S1QL 60-69 years, female 339.4
GTEX-1NV8Z-0011-R4b-SM-G8LMZ 60-69 years, male 338.5
GTEX-15CHQ-0011-R4a-SM-686ZX 60-69 years, male 336.3
GTEX-1JMQK-0011-R4a-SM-G8LLQ 60-69 years, male 334.6
GTEX-1QMI2-0011-R4b-SM-F3K4R 60-69 years, male 333.1
GTEX-1LH75-0011-R4a-SM-F2TAM 50-59 years, female 331.3
GTEX-13N2G-0011-R4b-SM-5MR54 60-69 years, male 328.1
GTEX-13X6K-0011-R4b-SM-5P9HO 60-69 years, female 326.8
GTEX-1N2EE-0011-R4a-SM-EXOII 60-69 years, male 325.9
GTEX-QVUS-0011-R4A-SM-3GAE7 60-69 years, female 323.3
GTEX-14PJM-0011-R4a-SM-5YYAS 50-59 years, female 322.3
GTEX-1H3O1-0011-R4b-SM-A9SKE 60-69 years, male 321.6
GTEX-17F97-0011-R4b-SM-7KFS2 50-59 years, male 320.7
GTEX-14PN4-0011-R4a-SM-686ZT 50-59 years, male 319.2
GTEX-ZAK1-0011-R4a-SM-6AJBK 50-59 years, female 317.2
GTEX-1LKK1-0011-R4b-SM-EY5YA 50-59 years, female 313.3
GTEX-14DAQ-0011-R4a-SM-5YYAI 60-69 years, female 306.9
GTEX-WHSE-0011-R4A-SM-3P5ZN 20-29 years, male 304.7
GTEX-14ABY-0011-R4b-SM-5S2VN 50-59 years, male 302.8
GTEX-1POEN-0011-R4b-SM-F3K4O 30-39 years, female 302.6
GTEX-13QIC-0011-R4a-SM-5PNX8 60-69 years, female 302.1
GTEX-1J1OQ-0011-R4a-SM-D4P2A 40-49 years, female 299.0
GTEX-1117F-0011-R4b-SM-GI4VM 60-69 years, female 298.3
GTEX-1H1CY-0011-R4b-SM-CJI3G 60-69 years, female 297.7
GTEX-NPJ7-0011-R4a-SM-2I3GJ 60-69 years, female 296.3
GTEX-13OW6-0011-R4a-SM-5O9DX 50-59 years, male 295.2
GTEX-13X6I-0011-R4b-SM-5PNU9 60-69 years, male 293.7
GTEX-12ZZW-0011-R4a-SM-5DUX9 50-59 years, male 292.9
GTEX-11TTK-0011-R4a-SM-DNZZU 60-69 years, female 288.0
GTEX-17EVQ-0011-R4b-SM-7LT94 70-79 years, male 284.6
GTEX-13RTJ-0011-R4b-SM-5PNX1 60-69 years, male 279.8
GTEX-1J8Q2-0011-R4a-SM-ADEHA 60-69 years, male 279.8
GTEX-1GZ4I-0011-R4a-SM-9QEI9 50-59 years, male 277.3
GTEX-14PQA-0011-R4b-SM-6AJBU 50-59 years, female 273.5
GTEX-13PVQ-0011-R4a-SM-5O9CT 50-59 years, male 271.5
GTEX-13CZV-0011-R4b-SM-5J2NY 60-69 years, male 269.0
GTEX-1RLM8-0011-R4a-SM-F2TBL 50-59 years, male 263.2
GTEX-1EX96-0011-R4a-SM-ARU82 50-59 years, male 262.2
GTEX-13JVG-0011-R4a-SM-5MR4C 60-69 years, male 259.2
GTEX-1C6VR-0011-R4b-SM-9QEGZ 60-69 years, male 254.2
GTEX-13OW7-0011-R4b-SM-5O9CX 50-59 years, male 252.9
GTEX-13OW8-0011-R4a-SM-9WG6V 60-69 years, male 251.4
GTEX-1RQED-0011-R4b-SM-F2I2X 60-69 years, male 249.7
GTEX-1QP6S-0011-R4b-SM-F33ZY 40-49 years, male 249.5
GTEX-13OVH-0011-R4a-SM-5KM3W 70-79 years, male 249.3
GTEX-15DCD-0011-R4a-SM-69LPB 70-79 years, female 248.3
GTEX-X585-0011-R4B-SM-46MVH 50-59 years, male 244.9
GTEX-11ZTS-0011-R4b-SM-GINAQ 60-69 years, female 238.4
GTEX-13OW5-0011-R4b-SM-5L3HS 60-69 years, male 234.8
GTEX-13OVL-0011-R4b-SM-5L3HV 50-59 years, male 234.4
GTEX-1N2DW-0011-R4b-SM-EZ6MD 50-59 years, male 231.4
GTEX-1LB8K-0011-R4b-SM-F6487 50-59 years, male 231.3
GTEX-1R46S-0011-R4b-SM-F2TBF 60-69 years, female 230.9
GTEX-12ZZZ-0011-R4b-SM-5DUV7 60-69 years, male 230.4
GTEX-145LU-0011-R4b-SM-5P9K1 50-59 years, male 228.4
GTEX-144GL-0011-R4a-SM-5PNUI 50-59 years, male 223.0
GTEX-ZYY3-0011-R4a-SM-GQ1CY 60-69 years, female 220.1
GTEX-1H23P-0011-R4b-SM-CL54R 60-69 years, male 213.6
GTEX-13QJC-0011-R4a-SM-H65ZP 60-69 years, female 213.4
GTEX-13NYS-0011-R4b-SM-5MR3O 60-69 years, male 212.7
GTEX-ZZPT-0011-R4a-SM-GPRX4 50-59 years, male 210.4
GTEX-1H1DG-0011-R4a-SM-CE6RQ 70-79 years, male 209.0
GTEX-12WSA-0011-R4a-SM-57WB7 60-69 years, male 205.7
GTEX-N7MT-0011-R4a-SM-2I3G9 60-69 years, female 203.2
GTEX-1J8EW-0011-R4b-SM-ARU89 60-69 years, female 202.8
GTEX-1JN1M-0011-R4b-SM-F6494 60-69 years, female 202.2
GTEX-13PLJ-0011-R4b-SM-GJ3R6 60-69 years, female 200.9
GTEX-11ZVC-0011-R4a-SM-5BC6Z 50-59 years, female 200.6
GTEX-NPJ8-0011-R4a-SM-2HML3 40-49 years, male 191.8
GTEX-X4XX-0011-R4B-SM-46MWL 60-69 years, male 190.8
GTEX-OHPN-0011-R4A-SM-2I5FD 60-69 years, female 184.0
GTEX-13OVJ-0011-R4b-SM-5P9H5 50-59 years, female 176.5
GTEX-13SLW-0011-R4b-SM-5S2W2 70-79 years, male 173.8
GTEX-1445S-0011-R4a-SM-5PNWN 60-69 years, male 166.8
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AMYGDALA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

617.0
FANTOM5 sample id Sample description Scaled Tags Per Million
Amygdala
Scaled Tags Per Million: 617.0
FF:10151-102I7 76 years, female 617.0

AMYGDALA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

144.2
Pig sample Sample description nTPM
Amygdala
nTPM: 144.3
Samples: 4

Max nTPM: 205.3
Min nTPM: 109.9
Sample A Female 205.3
Sample B Female 144.8
Sample C Male 117.0
Sample D Male 109.9

AMYGDALA - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

711.7
Mouse sample Sample description nTPM
Amygdala
nTPM: 711.7
Samples: 4

Max nTPM: 740.1
Min nTPM: 684.9
Sample A Male 684.9
Sample B Male 740.1
Sample C Female 727.6
Sample D Female 694.2

AMYGDALA - Allen Mouse ISHi

In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.

Max subtype Expression energyi

Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.

14.3
Allen experiment id Experiment description Expression energy
Cortical subplate
Expression energy: 14.3
75774682 Antisense, RP_060530_01_D07, Mouse strain C57BL/6J (56 days, male) 16.0
67978746 Antisense, RP_040923_01_G06, Mouse strain C57BL/6J (56 days, male) 12.6

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