HIPPOCAMPAL FORMATION - Expression summary
Protein expression
Hippocampusi
h
m
l
n
Glial cells: Not detected
Neuronal cells: Low
RNA expressioni
Consensus:321.0 nTPM
HPA Brain:47.8 nTPM
GTEx:321.0 nTPM
FANTOM5:609.9 Scaled Tags Per Million
Pig:191.4 nTPM
Mouse:658.6 nTPM
Allen mouse:12.5 Expression energy
BRAIN - SINGLE CELL RNA EXPRESSION

HIPPOCAMPUS - Antibody stainingi
Antibody HPA027999
Glial cells Not detected
Neuronal cells Low



HIPPOCAMPAL FORMATION - HPA Brain RNA-seq
Max subtype nTPMi 47.8
Sample id Sample description nTPM
Hippocampus
nTPM: 37.4
1898 Male, age 80, left hemisphere 42.9
2621 Female, age 67, right hemisphere 41.0
1855 Male, age 76, left hemisphere 37.2
2529 Female, age 94, left hemisphere 36.9
2148 Female, age 91, left hemisphere 34.4
1911 Female, age 85, right hemisphere 31.8
Dentate gyrus
nTPM: 36.8
2246 Female, age 85, both hemispheres 41.8
1927 Female, age 91, both hemispheres 39.3
2010 Male, age 76, both hemispheres 37.4
2530 Female, age 94, left hemisphere 37.4
2531 Female, age 67, both hemispheres 36.8
2528 Male, age 74, both hemispheres 28.2
Entorhinal gyrus
nTPM: 37.6
2764 Male, age 80, right hemisphere 41.1
1787 Male, age 76, left hemisphere 39.3
2613 Female, age 94, left hemisphere 38.9
1938 Female, age 85, left hemisphere 38.3
2686 Male, age 75, right hemisphere 37.5
2117 Female, age 91, right hemisphere 30.8
Hippocampus, CA1
nTPM: 41.7
2749 Male, age 80, left hemisphere 62.7
1873 Female, age 85, both hemispheres 39.8
2045 Male, age 76, both hemispheres 39.3
2527 Male, age 74, both hemispheres 36.5
2082 Female, age 91, right hemisphere 30.2
Hippocampus, CA2
nTPM: 37.2
1892 Male, age 76, both hemispheres 53.7
1963 Male, age 80, left hemisphere 41.8
2437 Female, age 94, left hemisphere 35.2
1940 Female, age 85, left hemisphere 34.6
2249 Male, age 74, both hemispheres 29.8
2113 Female, age 91, right hemisphere 28.4
Hippocampus, CA3
nTPM: 38.3
1867 Male, age 76, both hemispheres 42.5
2137 Male, age 80, left hemisphere 41.2
2436 Male, age 74, both hemispheres 40.2
1891 Female, age 85, both hemispheres 37.3
2861 Female, age 67, both hemispheres 34.7
2620 Female, age 94, left hemisphere 33.8
Parahippocampal cortex
nTPM: 40.6
2245 Female, age 91, both hemispheres 54.4
2532 Female, age 72, left hemisphere 45.1
1850 Male, age 80, both hemispheres 45.0
1933 Female, age 85, both hemispheres 44.8
1990 Female, age 91, right hemisphere 39.0
2018 Male, age 76, both hemispheres 38.3
2250 Female, age 67, right hemisphere 37.3
2622 Female, age 67, right hemisphere 36.2
2693 Female, age 94, both hemispheres 35.8
2692 Male, age 74, both hemispheres 30.5
Perirhinal gyrus
nTPM: 47.8
1847 Female, age 91, left hemisphere 56.2
1794 Male, age 80, right hemisphere 50.2
1841 Female, age 85, right hemisphere 47.5
2521 Female, age 94, right hemisphere 45.1
2848 Male, age 76, right hemisphere 40.0
Subiculum
nTPM: 35.8
2438 Female, age 94, left hemisphere 44.1
1977 Female, age 85, both hemispheres 42.9
1901 Male, age 80, both hemispheres 41.3
2619 Male, age 74, both hemispheres 31.2
2042 Male, age 76, both hemispheres 30.5
2729 Female, age 91, right hemisphere 24.7

HIPPOCAMPAL FORMATION - GTEx RNA-seqi
Max subtype nTPMi 321.0
GTEx sample id Sample description nTPM
Brain - Hippocampus
Average nTPM: 321.0
Samples: 255

Max nTPM: 876.9
Min nTPM: 103.3
Std nTPM: 122.9
Median nTPM: 309.9
GTEX-14LLW-0011-R1a-SM-5ZZVD 70-79 years, female 876.9
GTEX-12126-0011-R1a-SM-GJ3Q8 20-29 years, male 721.1
GTEX-11ZUS-0011-R1a-SM-GI4W7 30-39 years, male 694.7
GTEX-1F75A-0011-R1b-SM-CE6RA 50-59 years, male 650.5
GTEX-13O3Q-0011-R1b-SM-5KM3L 50-59 years, male 650.3
GTEX-13NYB-0011-R1b-SM-5KM4F 40-49 years, male 604.6
GTEX-144GL-0011-R1a-SM-5PNZ5 50-59 years, male 601.4
GTEX-1HT8W-0011-R1b-SM-CJI3V 30-39 years, male 582.8
GTEX-1IOXB-0011-R1a-SM-D4P27 50-59 years, male 577.0
GTEX-1EX96-0011-R1a-SM-CE6R5 50-59 years, male 558.5
GTEX-1P4AB-0011-R1b-SM-F2TAV 50-59 years, male 551.5
Show allShow less

HIPPOCAMPAL FORMATION - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 609.9
FANTOM5 sample id Sample description Scaled Tags Per Million
Hippocampus
Scaled Tags Per Million: 609.9
FF:10169-103B7 60 years, female 833.9
FF:10153-102I9 76 years, female 385.9

HIPPOCAMPAL FORMATION - Pig RNA-seqi
Max subtype nTPMi 191.4
Pig sample Sample description nTPM
Subiculum
nTPM: 172.3
Samples: 4

Max nTPM: 250.7
Min nTPM: 139.5
Sample A Female 250.7
Sample B Female 150.5
Sample C Male 139.5
Sample D Male 148.6
Dorsal hippocampus
nTPM: 191.4
Samples: 4

Max nTPM: 252.1
Min nTPM: 136.2
Sample A Female 252.1
Sample B Female 173.6
Sample C Male 203.7
Sample D Male 136.2
Entorhinal cortex
nTPM: 186.2
Samples: 4

Max nTPM: 230.9
Min nTPM: 137.9
Sample A Female 180.2
Sample B Female 230.9
Sample C Male 195.7
Sample D Male 137.9
Ventral hippocampus
nTPM: 175.7
Samples: 4

Max nTPM: 207.5
Min nTPM: 130.0
Sample A Female 207.5
Sample B Female 130.0
Sample C Male 199.5
Sample D Male 165.8

HIPPOCAMPAL FORMATION - Mouse RNA-seqi
Max subtype nTPMi 658.6
Mouse sample Sample description nTPM
Entorhinal cortex
nTPM: 658.6
Samples: 4

Max nTPM: 691.9
Min nTPM: 623.2
Sample A Male 623.2
Sample B Male 691.9
Sample C Female 668.3
Sample D Female 651.0
Hippocampal formation
nTPM: 548.0
Samples: 4

Max nTPM: 673.1
Min nTPM: 486.4
Sample A Male 673.1
Sample B Male 502.1
Sample C Female 486.4
Sample D Female 530.4

HIPPOCAMPAL FORMATION - Allen Mouse ISHi
Max subtype Expression energyi 12.5
Allen experiment id Experiment description Expression energy
Hippocampal formation
Expression energy: 12.5
75774682 Antisense, RP_060530_01_D07, Mouse strain C57BL/6J (56 days, male) 14.5
67978746 Antisense, RP_040923_01_G06, Mouse strain C57BL/6J (56 days, male) 10.5

Contact

The Project

The Human Protein Atlas

KAW logo The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.

contact@proteinatlas.org
GCBR logo Elixir core logo SciLifeLab logo Uppsala university logo KI logo KTH logo