MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:52.7 nTPM
HPA Brain:119.1 nTPM
GTEx:52.7 nTPM
FANTOM5:96.0 Scaled Tags Per Million
Pig:105.7 nTPM
Mouse:56.3 nTPM
Allen mouse:5.9 Expression energy
BRAIN - SINGLE CELL RNA EXPRESSION

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 119.1
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 103.3
2586 Male, age 75, left hemisphere 173.4
2666 Male, age 74, left hemisphere 129.1
2019 Male, age 18, unknown 107.5
1827 Male, age 72, unknown 99.5
2828 Female, age 72, unknown 97.6
1833 Male, age 53, unknown 90.3
2411 Female, age 72, unknown 87.0
1830 Male, age 51, unknown 86.4
1870 Female, age 42, unknown 84.0
2219 Male, age 76, both hemispheres 77.8
Dorsal raphe nucleus
nTPM: 68.5
2750 Male, age 76, both hemispheres 79.9
1828 Male, age 53, unknown 73.1
2016 Female, age 72, unknown 66.5
2047 Male, age 72, unknown 63.9
2298 Female, age 72, unknown 59.1
Inferior colliculus
nTPM: 76.7
1848 Female, age 42, unknown 79.2
2849 Male, age 72, unknown 79.2
1890 Male, age 53, unknown 77.0
2097 Female, age 72, unknown 71.4
Median raphe nucleus
nTPM: 52.8
2220 Male, age 76, midline 52.8
Periaquaductal grey, anterior
nTPM: 93.8
2502 Female, age 75, unknown 98.6
1795 Male, age 51, unknown 92.7
1947 Male, age 18, unknown 90.0
Periaquaductal grey, dorsal
nTPM: 64.5
2464 Female, age 72, unknown 76.5
1831 Male, age 72, unknown 70.6
1840 Male, age 53, unknown 62.1
2850 Male, age 76, both hemispheres 48.9
Periaquaductal grey, lateral
nTPM: 61.4
2053 Male, age 18, unknown 71.0
2272 Male, age 74, both hemispheres 58.3
2140 Male, age 76, both hemispheres 54.9
Pretectal area
nTPM: 94.2
2007 Male, age 72, unknown 135.0
1816 Male, age 51, unknown 128.0
1944 Female, age 72, unknown 119.3
1815 Male, age 53, unknown 117.5
1817 Female, age 42, unknown 115.3
2407 Male, age 75, both hemispheres 94.0
2316 Male, age 76, right hemisphere 77.5
2825 Male, age 18, unknown 73.2
2667 Female, age 75, unknown 67.0
2224 Female, age 72, unknown 57.3
2273 Male, age 74, both hemispheres 52.5
Red nucleus
nTPM: 119.1
2588 Male, age 74, left hemisphere 180.9
2584 Male, age 75, left hemisphere 137.1
2785 Male, age 18, unknown 124.1
2503 Female, age 72, unknown 123.7
2725 Female, age 75, unknown 122.1
1904 Male, age 53, unknown 121.7
1865 Male, age 51, unknown 112.1
2769 Male, age 72, unknown 109.7
2227 Male, age 72, unknown 107.8
2823 Male, age 76, right hemisphere 99.2
1954 Female, age 42, unknown 97.5
1821 Female, age 72, unknown 92.8
Substantia nigra
nTPM: 84.1
2583 Male, age 75, right hemisphere 108.6
1889 Female, age 72, unknown 100.1
2665 Male, age 74, both hemispheres 93.8
2590 Female, age 75, unknown 90.9
1916 Female, age 42, unknown 88.4
1851 Male, age 51, unknown 79.2
1941 Male, age 53, unknown 78.5
2409 Female, age 72, unknown 70.5
2699 Male, age 18, unknown 67.3
2241 Male, age 72, unknown 63.6
Superior colliculus
nTPM: 99.6
2261 Male, age 18, unknown 117.7
2664 Male, age 75, both hemispheres 112.5
2668 Female, age 75, unknown 110.3
1796 Male, age 53, unknown 104.2
2087 Female, age 72, unknown 97.9
2587 Male, age 74, left hemisphere 97.4
1995 Male, age 72, unknown 93.4
1913 Female, age 42, unknown 91.3
1839 Male, age 51, unknown 88.6
1895 Male, age 76, right hemisphere 82.4
Ventral tegmental area
nTPM: 75.7
2223 Female, age 72, unknown 87.9
2410 Female, age 72, unknown 87.0
1942 Male, age 51, unknown 75.5
1915 Female, age 42, unknown 72.8
2218 Male, age 76, both hemispheres 72.5
2021 Male, age 53, unknown 58.5

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 52.7
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 52.7
Samples: 183

Max nTPM: 151.0
Min nTPM: 12.3
Std nTPM: 25.4
Median nTPM: 44.8
GTEX-1N5O9-0011-R2a-SM-G8LM1 60-69 years, male 151.0
GTEX-139TS-0011-R2b-SM-5J1MX 60-69 years, male 141.3
GTEX-1I19N-0011-R2b-SM-GPRYG 70-79 years, male 127.8
GTEX-ZV68-0011-R2a-SM-4YCDK 50-59 years, female 119.5
GTEX-ZDXO-0011-R2b-SM-4WKFG 60-69 years, male 114.8
GTEX-1HT8W-0011-R2a-SM-CMKH9 30-39 years, male 111.8
GTEX-1NV5F-0011-R2a-SM-G8LME 60-69 years, female 109.6
GTEX-1IDJH-0011-R2a-SM-GPI9D 70-79 years, male 108.3
GTEX-1117F-0011-R2b-SM-GI4VL 60-69 years, female 106.1
GTEX-ZAJG-0011-R2a-SM-GNTAX 50-59 years, female 104.7
GTEX-ZE9C-0011-R2a-SM-4WKGH 60-69 years, male 102.5
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 96.0
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 96.0
FF:10158-103A5 76 years, female 96.0

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 105.7
Pig sample Sample description nTPM
Substantia nigra
nTPM: 80.1
Samples: 4

Max nTPM: 90.4
Min nTPM: 60.2
Sample A Female 86.6
Sample B Female 60.2
Sample C Male 90.4
Sample D Male 83.3
Midbrain
nTPM: 105.7
Samples: 4

Max nTPM: 114.9
Min nTPM: 96.7
Sample A Female 106.2
Sample B Female 96.7
Sample C Male 114.9
Sample D Male 104.8
Periaqueductal gray
nTPM: 72.9
Samples: 3

Max nTPM: 88.2
Min nTPM: 59.4
Sample B Female 88.2
Sample C Male 71.0
Sample D Male 59.4
Superior colliculi
nTPM: 94.6
Samples: 4

Max nTPM: 115.4
Min nTPM: 53.0
Sample A Female 95.4
Sample B Female 53.0
Sample C Male 114.6
Sample D Male 115.4

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 56.3
Mouse sample Sample description nTPM
Midbrain
nTPM: 56.3
Samples: 4

Max nTPM: 60.8
Min nTPM: 51.3
Sample A Male 51.3
Sample B Male 56.1
Sample C Female 60.8
Sample D Female 56.9

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 5.9
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 5.9
71378475 Antisense, RP_050510_03_G10, Mouse strain C57BL/6J (56 days, male) 9.6
74300777 Antisense, RP_051219_03_G06, Mouse strain C57BL/6J (56 days, male) 2.3

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