A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
80.3
nTPM
Monaco:
148.2
nTPM
Schmiedel:
128.9
TPM
NK-CELLS - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
80.3
HPA sample
nTPM
NK-cell nTPM: 80.4
Samples: 6
Max nTPM: 108.7
Min nTPM: 49.7
P10809_1013
51.7
P10809_1033
49.7
P10809_1052
108.7
P10809_1071
100.1
P10809_1093
86.9
P10809_1103
85.0
NK-CELLS - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
148.2
Monaco sample
nTPM
NK-cell nTPM: 148.2
Samples: 4
Max nTPM: 180.3
Min nTPM: 90.6
RHH5316_R3683
180.3
RHH5224_R3596
90.6
RHH5253_R3625
157.2
RHH5282_R3654
164.6
NK-CELLS - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
128.9
Schmiedel sample id
TPM
NK-cell TPM: 128.9
Samples: 90
Max TPM: 183.0
Min TPM: 95.7
NK_1
183.0
NK_2
175.3
NK_3
170.0
NK_4
161.5
NK_5
160.4
NK_6
155.7
NK_7
155.1
NK_8
152.8
NK_9
152.6
NK_10
151.4
NK_11
151.0
NK_12
149.0
NK_13
148.6
NK_14
148.4
NK_15
146.1
NK_16
145.5
NK_17
144.6
NK_18
143.4
NK_19
142.1
NK_20
141.9
NK_21
141.8
NK_22
141.8
NK_23
141.2
NK_24
140.4
NK_25
140.2
NK_26
138.5
NK_27
138.3
NK_28
136.8
NK_29
136.3
NK_30
134.2
NK_31
134.0
NK_32
132.1
NK_33
131.7
NK_34
131.4
NK_35
131.2
NK_36
130.8
NK_37
130.5
NK_38
130.2
NK_39
129.7
NK_40
129.4
NK_41
129.4
NK_42
129.2
NK_43
128.8
NK_44
128.6
NK_45
127.8
NK_46
127.6
NK_47
127.4
NK_48
127.3
NK_49
126.0
NK_50
125.9
NK_51
125.7
NK_52
125.4
NK_53
125.1
NK_54
125.1
NK_55
123.6
NK_56
123.4
NK_57
121.5
NK_58
121.5
NK_59
121.1
NK_60
120.7
NK_61
120.5
NK_62
120.2
NK_63
120.0
NK_64
120.0
NK_65
118.3
NK_66
118.0
NK_67
118.0
NK_68
117.4
NK_69
117.1
NK_70
116.0
NK_71
115.9
NK_72
115.4
NK_73
113.4
NK_74
113.2
NK_75
112.7
NK_76
112.0
NK_77
110.3
NK_78
110.0
NK_79
109.3
NK_80
106.6
NK_81
104.7
NK_82
103.9
NK_83
102.8
NK_84
101.8
NK_85
101.1
NK_86
101.0
NK_87
100.4
NK_88
97.9
NK_89
96.3
NK_90
95.7
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