MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:63.4 nTPM
HPA Brain:185.5 nTPM
GTEx:63.4 nTPM
FANTOM5:9.4 Scaled Tags Per Million
Pig:76.3 nTPM
Mouse:31.4 nTPM
Allen mouse:8.5 Expression energy
BRAIN - SINGLE CELL RNA EXPRESSION

MIDBRAIN - Annotated protein expression
Pending normal tissue analysis

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 185.5
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 150.6
2586 Male, age 75, left hemisphere 203.7
2828 Female, age 72, unknown 162.8
2019 Male, age 18, unknown 158.0
2666 Male, age 74, left hemisphere 156.0
2219 Male, age 76, both hemispheres 149.6
2411 Female, age 72, unknown 146.2
1827 Male, age 72, unknown 140.2
1833 Male, age 53, unknown 135.3
1870 Female, age 42, unknown 128.0
1830 Male, age 51, unknown 126.3
Dorsal raphe nucleus
nTPM: 125.6
2750 Male, age 76, both hemispheres 135.7
2298 Female, age 72, unknown 131.0
1828 Male, age 53, unknown 125.0
2047 Male, age 72, unknown 125.0
2016 Female, age 72, unknown 111.5
Inferior colliculus
nTPM: 137.0
1848 Female, age 42, unknown 147.3
2849 Male, age 72, unknown 137.0
2097 Female, age 72, unknown 134.7
1890 Male, age 53, unknown 128.8
Median raphe nucleus
nTPM: 121.8
2220 Male, age 76, midline 121.8
Periaquaductal grey, anterior
nTPM: 185.5
2502 Female, age 75, unknown 242.4
1795 Male, age 51, unknown 162.2
1947 Male, age 18, unknown 151.8
Periaquaductal grey, dorsal
nTPM: 121.7
2464 Female, age 72, unknown 143.3
1840 Male, age 53, unknown 137.4
1831 Male, age 72, unknown 109.6
2850 Male, age 76, both hemispheres 96.6
Periaquaductal grey, lateral
nTPM: 113.2
2053 Male, age 18, unknown 119.2
2272 Male, age 74, both hemispheres 111.4
2140 Male, age 76, both hemispheres 108.9
Pretectal area
nTPM: 136.8
2007 Male, age 72, unknown 173.9
1816 Male, age 51, unknown 163.6
1944 Female, age 72, unknown 155.0
1817 Female, age 42, unknown 152.7
1815 Male, age 53, unknown 142.9
2825 Male, age 18, unknown 130.1
2224 Female, age 72, unknown 123.7
2316 Male, age 76, right hemisphere 119.9
2667 Female, age 75, unknown 118.6
2407 Male, age 75, both hemispheres 116.2
2273 Male, age 74, both hemispheres 108.6
Red nucleus
nTPM: 144.3
2588 Male, age 74, left hemisphere 167.5
2785 Male, age 18, unknown 161.9
2769 Male, age 72, unknown 158.0
2227 Male, age 72, unknown 154.5
2584 Male, age 75, left hemisphere 152.0
2503 Female, age 72, unknown 147.0
2725 Female, age 75, unknown 135.9
1904 Male, age 53, unknown 134.1
1954 Female, age 42, unknown 133.8
1865 Male, age 51, unknown 131.0
2823 Male, age 76, right hemisphere 130.4
1821 Female, age 72, unknown 125.9
Substantia nigra
nTPM: 128.1
1916 Female, age 42, unknown 152.5
2665 Male, age 74, both hemispheres 150.0
1851 Male, age 51, unknown 144.4
1889 Female, age 72, unknown 135.1
2583 Male, age 75, right hemisphere 132.4
1941 Male, age 53, unknown 120.5
2699 Male, age 18, unknown 118.1
2590 Female, age 75, unknown 116.7
2409 Female, age 72, unknown 107.5
2241 Male, age 72, unknown 103.2
Superior colliculus
nTPM: 143.2
2664 Male, age 75, both hemispheres 182.4
1796 Male, age 53, unknown 164.6
2261 Male, age 18, unknown 151.0
2087 Female, age 72, unknown 146.9
2668 Female, age 75, unknown 139.3
1839 Male, age 51, unknown 137.5
1995 Male, age 72, unknown 134.6
2587 Male, age 74, left hemisphere 127.4
1895 Male, age 76, right hemisphere 125.4
1913 Female, age 42, unknown 122.4
Ventral tegmental area
nTPM: 136.0
1942 Male, age 51, unknown 147.8
2218 Male, age 76, both hemispheres 143.9
2410 Female, age 72, unknown 142.6
1915 Female, age 42, unknown 131.6
2021 Male, age 53, unknown 128.6
2223 Female, age 72, unknown 121.3

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 63.4
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 63.4
Samples: 183

Max nTPM: 147.3
Min nTPM: 14.6
Std nTPM: 19.9
Median nTPM: 63.1
GTEX-1N5O9-0011-R2a-SM-G8LM1 60-69 years, male 147.3
GTEX-1KD4Q-0011-R2a-SM-F649I 40-49 years, male 122.8
GTEX-1IDJH-0011-R2a-SM-GPI9D 70-79 years, male 118.7
GTEX-1HBPH-0011-R2a-SM-GQ1DS 40-49 years, female 102.4
GTEX-WL46-0011-R2A-SM-3LK6O 50-59 years, male 101.1
GTEX-1MA7X-0011-R2b-SM-EZ6MT 60-69 years, male 98.6
GTEX-1POEN-0011-R2b-SM-G8LLP 30-39 years, female 97.1
GTEX-ZE9C-0011-R2a-SM-4WKGH 60-69 years, male 96.1
GTEX-13O3O-0011-R2b-SM-5P9H1 60-69 years, female 93.9
GTEX-1MJK2-0011-R2b-SM-EXUS5 50-59 years, male 93.9
GTEX-1LB8K-0011-R2a-SM-EZ6MQ 50-59 years, male 93.6
Show allShow less

MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 9.4
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 9.4
FF:10158-103A5 76 years, female 9.4

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 76.3
Pig sample Sample description nTPM
Substantia nigra
nTPM: 68.4
Samples: 4

Max nTPM: 81.0
Min nTPM: 46.4
Sample A Female 81.0
Sample B Female 46.4
Sample C Male 77.1
Sample D Male 68.9
Midbrain
nTPM: 76.3
Samples: 4

Max nTPM: 97.0
Min nTPM: 62.5
Sample A Female 74.6
Sample B Female 62.5
Sample C Male 97.0
Sample D Male 71.2
Periaqueductal gray
nTPM: 58.4
Samples: 3

Max nTPM: 62.4
Min nTPM: 53.3
Sample B Female 59.6
Sample C Male 62.4
Sample D Male 53.3
Superior colliculi
nTPM: 68.7
Samples: 4

Max nTPM: 84.6
Min nTPM: 32.3
Sample A Female 75.7
Sample B Female 32.3
Sample C Male 84.6
Sample D Male 82.0

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 31.4
Mouse sample Sample description nTPM
Midbrain
nTPM: 31.5
Samples: 4

Max nTPM: 35.5
Min nTPM: 28.9
Sample A Male 35.5
Sample B Male 30.9
Sample C Female 28.9
Sample D Female 30.5

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 8.5
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 8.5
68845299 Antisense, RP_050224_01_E06, Mouse strain C57BL/6J (56 days, male) 8.5

Contact

The Project

The Human Protein Atlas

KAW logo The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.

contact@proteinatlas.org
GCBR logo Elixir core logo SciLifeLab logo Uppsala university logo KI logo KTH logo