MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:35.4 nTPM
HPA Brain:69.7 nTPM
GTEx:35.4 nTPM
FANTOM5:78.0 Scaled Tags Per Million
Pig:42.1 nTPM
Mouse:26.8 nTPM
Allen mouse:0.1 Expression energy
BRAIN - SINGLE CELL RNA EXPRESSION

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 69.7
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 65.0
2666 Male, age 74, left hemisphere 82.5
2828 Female, age 72, unknown 76.4
2586 Male, age 75, left hemisphere 73.2
2019 Male, age 18, unknown 70.3
1833 Male, age 53, unknown 62.3
1830 Male, age 51, unknown 62.1
1870 Female, age 42, unknown 61.4
2411 Female, age 72, unknown 60.7
1827 Male, age 72, unknown 60.1
2219 Male, age 76, both hemispheres 41.6
Dorsal raphe nucleus
nTPM: 61.7
2016 Female, age 72, unknown 66.9
2047 Male, age 72, unknown 63.8
1828 Male, age 53, unknown 63.2
2298 Female, age 72, unknown 60.0
2750 Male, age 76, both hemispheres 54.5
Inferior colliculus
nTPM: 55.3
1890 Male, age 53, unknown 59.6
1848 Female, age 42, unknown 58.2
2097 Female, age 72, unknown 52.1
2849 Male, age 72, unknown 51.4
Median raphe nucleus
nTPM: 66.9
2220 Male, age 76, midline 66.9
Periaquaductal grey, anterior
nTPM: 61.4
1795 Male, age 51, unknown 63.2
1947 Male, age 18, unknown 63.2
2502 Female, age 75, unknown 57.8
Periaquaductal grey, dorsal
nTPM: 54.4
1831 Male, age 72, unknown 65.7
2464 Female, age 72, unknown 53.5
2850 Male, age 76, both hemispheres 50.3
1840 Male, age 53, unknown 47.9
Periaquaductal grey, lateral
nTPM: 55.1
2272 Male, age 74, both hemispheres 59.3
2140 Male, age 76, both hemispheres 53.0
2053 Male, age 18, unknown 52.9
Pretectal area
nTPM: 57.2
1817 Female, age 42, unknown 67.8
2007 Male, age 72, unknown 67.8
1944 Female, age 72, unknown 59.9
2407 Male, age 75, both hemispheres 59.0
2825 Male, age 18, unknown 56.9
1815 Male, age 53, unknown 56.8
2316 Male, age 76, right hemisphere 54.1
2224 Female, age 72, unknown 54.0
1816 Male, age 51, unknown 53.4
2273 Male, age 74, both hemispheres 49.9
2667 Female, age 75, unknown 49.8
Red nucleus
nTPM: 69.7
2584 Male, age 75, left hemisphere 83.8
2588 Male, age 74, left hemisphere 74.9
2785 Male, age 18, unknown 72.9
1865 Male, age 51, unknown 71.8
2769 Male, age 72, unknown 70.4
1904 Male, age 53, unknown 70.1
2503 Female, age 72, unknown 70.0
2227 Male, age 72, unknown 69.8
1954 Female, age 42, unknown 64.7
1821 Female, age 72, unknown 64.5
2725 Female, age 75, unknown 62.9
2823 Male, age 76, right hemisphere 60.9
Substantia nigra
nTPM: 68.2
2583 Male, age 75, right hemisphere 89.2
2665 Male, age 74, both hemispheres 84.1
2590 Female, age 75, unknown 83.6
1916 Female, age 42, unknown 74.5
1851 Male, age 51, unknown 72.7
2699 Male, age 18, unknown 63.4
1941 Male, age 53, unknown 61.9
1889 Female, age 72, unknown 55.0
2409 Female, age 72, unknown 49.0
2241 Male, age 72, unknown 48.9
Superior colliculus
nTPM: 59.5
2664 Male, age 75, both hemispheres 74.0
2587 Male, age 74, left hemisphere 65.1
2668 Female, age 75, unknown 63.0
1796 Male, age 53, unknown 62.4
2087 Female, age 72, unknown 61.0
1913 Female, age 42, unknown 60.3
1995 Male, age 72, unknown 60.1
1839 Male, age 51, unknown 57.3
2261 Male, age 18, unknown 54.3
1895 Male, age 76, right hemisphere 37.9
Ventral tegmental area
nTPM: 64.8
2021 Male, age 53, unknown 68.4
2410 Female, age 72, unknown 66.6
2218 Male, age 76, both hemispheres 66.0
1915 Female, age 42, unknown 65.2
1942 Male, age 51, unknown 63.1
2223 Female, age 72, unknown 59.6

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 35.4
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 35.4
Samples: 183

Max nTPM: 111.0
Min nTPM: 18.2
Std nTPM: 9.6
Median nTPM: 33.4
GTEX-X4EP-0011-R2B-SM-3P625 60-69 years, female 111.0
GTEX-1H23P-0011-R2a-SM-CKZP3 60-69 years, male 68.1
GTEX-15G19-0011-R2b-SM-H6Q7S 60-69 years, male 59.1
GTEX-13PDP-0011-R2b-SM-5O9DH 60-69 years, male 58.5
GTEX-1J1OQ-0011-R2b-SM-ARU88 40-49 years, female 53.8
GTEX-1HBPH-0011-R2a-SM-GQ1DS 40-49 years, female 53.4
GTEX-1IDJH-0011-R2a-SM-GPI9D 70-79 years, male 51.7
GTEX-1P4AB-0011-R2a-SM-F649K 50-59 years, male 51.6
GTEX-ZAJG-0011-R2a-SM-GNTAX 50-59 years, female 50.4
GTEX-13QJC-0011-R2b-SM-5PNUN 60-69 years, female 50.0
GTEX-XMD1-0011-R2B-SM-4AT5N 60-69 years, male 50.0
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 78.0
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 78.0
FF:10158-103A5 76 years, female 78.0

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 42.1
Pig sample Sample description nTPM
Substantia nigra
nTPM: 42.2
Samples: 4

Max nTPM: 46.8
Min nTPM: 37.8
Sample A Female 46.8
Sample B Female 40.6
Sample C Male 43.4
Sample D Male 37.8
Midbrain
nTPM: 40.2
Samples: 4

Max nTPM: 44.3
Min nTPM: 31.9
Sample A Female 42.4
Sample B Female 42.2
Sample C Male 44.3
Sample D Male 31.9
Periaqueductal gray
nTPM: 37.0
Samples: 3

Max nTPM: 40.7
Min nTPM: 33.7
Sample B Female 36.7
Sample C Male 40.7
Sample D Male 33.7
Superior colliculi
nTPM: 40.5
Samples: 4

Max nTPM: 45.0
Min nTPM: 37.2
Sample A Female 45.0
Sample B Female 40.6
Sample C Male 37.2
Sample D Male 39.2

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 26.8
Mouse sample Sample description nTPM
Midbrain
nTPM: 26.8
Samples: 4

Max nTPM: 27.6
Min nTPM: 25.5
Sample A Male 27.0
Sample B Male 27.6
Sample C Female 25.5
Sample D Female 27.2

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 0.1
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.1
68300968 Antisense, RP_041129_02_E06, Mouse strain C57BL/6J (56 days, male) 0.1

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