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RPL27
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  • RPL27
BRAIN AMYGDALA Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS
MEDULLA OBLONGATA MIDBRAIN OLFACTORY BULB PONS SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
Amygdala
Brain methods
AMYGDALA - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.

Scroll down to view mRNA expression data in more detail.

Consensus:1268.1 nTPM
HPA Brain:261.2 nTPM
GTEx:1268.1 nTPM
FANTOM5:39.8 Scaled Tags Per Million
Pig:311.9 nTPM
Mouse:384.6 nTPM
Allen mouse:0.0 Expression energy
BRAIN - SINGLE CELL RNA EXPRESSION
Explore single cell type data

AMYGDALA - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

261.2
Sample id Sample description nTPM
Amygdala
nTPM: 261.2
2695 Female, age 67, right hemisphere 307.3
2514 Male, age 75, right hemisphere 294.5
2517 Female, age 94, left hemisphere 247.1
2814 Male, age 76, right hemisphere 229.0
1987 Female, age 91, left hemisphere 228.3
Basal amygdala
nTPM: 211.9
2827 Female, age 67, right hemisphere 256.7
2609 Male, age 75, right hemisphere 248.6
2110 Male, age 80, left hemisphere 207.9
2685 Female, age 94, left hemisphere 200.2
2243 Female, age 91, right hemisphere 184.3
1955 Male, age 76, both hemispheres 173.9
Central amygdala
nTPM: 239.5
2826 Female, age 94, left hemisphere 344.0
2515 Male, age 75, right hemisphere 245.4
2239 Male, age 80, left hemisphere 213.5
2701 Female, age 91, right hemisphere 199.7
1905 Male, age 76, both hemispheres 195.1
Corticomedial amygdala
nTPM: 214.4
2428 Male, age 75, right hemisphere 227.3
2240 Male, age 76, both hemispheres 218.6
2429 Female, age 94, left hemisphere 215.1
2242 Female, age 91, right hemisphere 210.8
2829 Male, age 80, left hemisphere 208.2
2535 Female, age 67, right hemisphere 206.2
Lateral amygdala
nTPM: 231.9
2516 Male, age 75, right hemisphere 294.8
2830 Female, age 67, right hemisphere 290.2
2534 Female, age 94, left hemisphere 272.1
2256 Male, age 80, left hemisphere 192.1
1883 Male, age 76, both hemispheres 176.6
2255 Female, age 91, right hemisphere 165.3

AMYGDALA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

1268.1
GTEx sample id Sample description nTPM
Brain - Amygdala
Average nTPM: 1268.1
Samples: 181

Max nTPM: 4251.3
Min nTPM: 683.2
Std nTPM: 480.3
Median nTPM: 1171.3
GTEX-14JG1-0011-R4b-SM-62LEB 40-49 years, male 4251.3
GTEX-14JFF-0011-R4a-SM-5ZZV5 60-69 years, male 3584.9
GTEX-147GR-0011-R4a-SM-5S2V2 60-69 years, male 2848.2
GTEX-17HG3-0011-R4a-SM-7IGLL 30-39 years, female 2845.9
GTEX-11ZU8-0011-R4a-SM-5BC6Y 60-69 years, male 2645.4
GTEX-1F75A-0011-R4a-SM-ARL8J 50-59 years, male 2488.9
GTEX-12WSH-0011-R4a-SM-5GU6K 50-59 years, male 2351.0
GTEX-1H1CY-0011-R4b-SM-CJI3G 60-69 years, female 2322.3
GTEX-11DYG-0011-R4b-SM-GJ3RG 60-69 years, male 2268.5
GTEX-1JMQJ-0011-R4b-SM-EXUT8 50-59 years, male 2211.7
GTEX-14E7W-0011-R4b-SM-62LEA 70-79 years, male 1950.2
GTEX-1GF9W-0011-R4a-SM-CE6RH 60-69 years, male 1929.7
GTEX-1CB4G-0011-R4b-SM-CJI28 60-69 years, male 1928.4
GTEX-1GZ4I-0011-R4a-SM-9QEI9 50-59 years, male 1924.5
GTEX-1C6WA-0011-R4a-SM-9QEH2 60-69 years, male 1908.5
GTEX-1PWST-0011-R4a-SM-F2T9X 70-79 years, male 1840.1
GTEX-PVOW-0011-R4A-SM-H6Q8O 40-49 years, male 1790.0
GTEX-1C6VR-0011-R4b-SM-9QEGZ 60-69 years, male 1786.1
GTEX-1JMQK-0011-R4a-SM-G8LLQ 60-69 years, male 1682.1
GTEX-1JJ6O-0011-R4a-SM-EY5YM 60-69 years, male 1657.5
GTEX-1R46S-0011-R4b-SM-F2TBF 60-69 years, female 1650.1
GTEX-17EVQ-0011-R4b-SM-7LT94 70-79 years, male 1640.0
GTEX-12ZZW-0011-R4a-SM-5DUX9 50-59 years, male 1624.1
GTEX-13OW6-0011-R4a-SM-5O9DX 50-59 years, male 1623.3
GTEX-16YQH-0011-R4a-SM-7EPGI 30-39 years, male 1578.0
GTEX-1J8Q2-0011-R4a-SM-ADEHA 60-69 years, male 1569.8
GTEX-1LKK1-0011-R4b-SM-EY5YA 50-59 years, female 1565.7
GTEX-1LVAO-0011-R4a-SM-EXURO 60-69 years, male 1563.3
GTEX-11NV4-0011-R4a-SM-GI4XC 60-69 years, male 1546.5
GTEX-1JMLX-0011-R4a-SM-EY5YJ 50-59 years, male 1538.4
GTEX-1E1VI-0011-R4b-SM-9QEHV 50-59 years, male 1537.4
GTEX-1NV8Z-0011-R4b-SM-G8LMZ 60-69 years, male 1521.6
GTEX-1RQED-0011-R4b-SM-F2I2X 60-69 years, male 1500.1
GTEX-13FLV-0011-R4a-SM-5LZYU 50-59 years, male 1498.6
GTEX-13PLJ-0011-R4b-SM-GJ3R6 60-69 years, female 1488.5
GTEX-111FC-0011-R4a-SM-GIN8K 60-69 years, male 1482.9
GTEX-1LVA9-0011-R4a-SM-F2TA2 50-59 years, male 1451.1
GTEX-13NYB-0011-R4b-SM-9QEGJ 40-49 years, male 1446.5
GTEX-1RLM8-0011-R4a-SM-F2TBL 50-59 years, male 1442.6
GTEX-OHPN-0011-R4A-SM-2I5FD 60-69 years, female 1442.0
GTEX-1LB8K-0011-R4b-SM-F6487 50-59 years, male 1425.9
GTEX-1RDX4-0011-R4b-SM-F3K43 50-59 years, female 1415.8
GTEX-1I1GR-0011-R4a-SM-CMKHC 60-69 years, male 1399.3
GTEX-139T8-0011-R4a-SM-5HL54 60-69 years, male 1398.8
GTEX-12WSC-0011-R4a-SM-H6Q8M 50-59 years, male 1384.6
GTEX-1117F-0011-R4b-SM-GI4VM 60-69 years, female 1362.9
GTEX-13SLX-0011-R4a-SM-5O9BJ 50-59 years, female 1361.2
GTEX-14JIY-0011-R4b-SM-5ZZV7 60-69 years, male 1359.0
GTEX-1P4AB-0011-R4b-SM-F2T9S 50-59 years, male 1352.3
GTEX-RNOR-0011-R4A-SM-3GAD3 50-59 years, female 1351.1
GTEX-1H23P-0011-R4b-SM-CL54R 60-69 years, male 1349.0
GTEX-1MJK2-0011-R4a-SM-F3426 50-59 years, male 1348.6
GTEX-1ICLZ-0011-R4a-SM-CMKHL 60-69 years, male 1348.0
GTEX-13JVG-0011-R4a-SM-5MR4C 60-69 years, male 1346.9
GTEX-11ZTS-0011-R4b-SM-GINAQ 60-69 years, female 1340.8
GTEX-13FHO-0011-R4b-SM-H6611 60-69 years, male 1336.6
GTEX-15RJE-0011-R4a-SM-H7OH4 40-49 years, male 1331.8
GTEX-12ZZZ-0011-R4b-SM-5DUV7 60-69 years, male 1330.3
GTEX-1EX96-0011-R4a-SM-ARU82 50-59 years, male 1328.1
GTEX-1F6IF-0011-R4b-SM-CKZNJ 60-69 years, male 1321.6
GTEX-11PRG-0011-R4a-SM-DNZZR 50-59 years, male 1318.8
GTEX-11GSO-0011-R4b-SM-GJ3R8 60-69 years, male 1310.7
GTEX-1J1OQ-0011-R4a-SM-D4P2A 40-49 years, female 1304.5
GTEX-13OVL-0011-R4b-SM-5L3HV 50-59 years, male 1300.0
GTEX-147F4-0011-R4b-SM-GJ3R4 50-59 years, male 1291.9
GTEX-13OVH-0011-R4a-SM-5KM3W 70-79 years, male 1288.9
GTEX-11TTK-0011-R4a-SM-DNZZU 60-69 years, female 1288.2
GTEX-ZAB4-0011-R4a-SM-4SOKB 40-49 years, male 1271.8
GTEX-17F97-0011-R4b-SM-7KFS2 50-59 years, male 1263.5
GTEX-1GMR8-0011-R4a-SM-9OSX1 50-59 years, female 1261.2
GTEX-13CZV-0011-R4b-SM-5J2NY 60-69 years, male 1261.1
GTEX-1F7RK-0011-R4b-SM-9QEI7 20-29 years, female 1260.9
GTEX-13PVQ-0011-R4a-SM-5O9CT 50-59 years, male 1254.6
GTEX-13QJC-0011-R4a-SM-H65ZP 60-69 years, female 1246.8
GTEX-15ER7-0011-R4a-SM-6M46S 20-29 years, female 1245.7
GTEX-15SHU-0011-R4b-SM-7IGLC 40-49 years, female 1241.0
GTEX-1399T-0011-R4b-SM-5DUVX 60-69 years, male 1232.5
GTEX-QVUS-0011-R4A-SM-3GAE7 60-69 years, female 1230.3
GTEX-13QIC-0011-R4a-SM-5PNX8 60-69 years, female 1228.4
GTEX-1JN1M-0011-R4b-SM-F6494 60-69 years, female 1227.5
GTEX-145LU-0011-R4b-SM-5P9K1 50-59 years, male 1227.0
GTEX-14PJM-0011-R4a-SM-5YYAS 50-59 years, female 1223.2
GTEX-13O3Q-0011-R4a-SM-5P9H2 50-59 years, male 1215.9
GTEX-11OF3-0011-R4a-SM-GJ3RB 60-69 years, male 1205.8
GTEX-14DAQ-0011-R4a-SM-5YYAI 60-69 years, female 1205.0
GTEX-1B8L1-0011-R4a-SM-7EWFJ 60-69 years, male 1194.4
GTEX-1N2DW-0011-R4b-SM-EZ6MD 50-59 years, male 1190.0
GTEX-17EVP-0011-R4a-SM-79OML 40-49 years, male 1188.6
GTEX-1N2EE-0011-R4a-SM-EXOII 60-69 years, male 1183.7
GTEX-1H1DG-0011-R4a-SM-CE6RQ 70-79 years, male 1180.3
GTEX-11ONC-0011-R4b-SM-DO93H 60-69 years, male 1171.3
GTEX-NL4W-0011-R4a-SM-2I5GZ 50-59 years, male 1169.4
GTEX-11GS4-0011-R4a-SM-GJ3RJ 60-69 years, male 1155.0
GTEX-1PIIG-0011-R4a-SM-F2TAQ 30-39 years, male 1149.2
GTEX-13O3O-0011-R4b-SM-5KM3F 60-69 years, female 1148.5
GTEX-14ASI-0011-R4a-SM-69LQ4 60-69 years, male 1144.9
GTEX-13X6J-0011-R4b-SM-5P9K4 50-59 years, male 1143.1
GTEX-1HBPI-0011-R4a-SM-CJI3K 50-59 years, male 1142.1
GTEX-12WSF-0011-R4b-SM-5HL88 70-79 years, male 1141.1
GTEX-14BMV-0011-R4a-SM-H6Q7P 50-59 years, male 1139.1
GTEX-12WSA-0011-R4a-SM-57WB7 60-69 years, male 1138.8
GTEX-ZYY3-0011-R4a-SM-GQ1CY 60-69 years, female 1136.1
GTEX-1KWVE-0011-R4a-SM-F3K5X 30-39 years, male 1134.9
GTEX-1J8EW-0011-R4b-SM-ARU89 60-69 years, female 1130.0
GTEX-1GTWX-0011-R4a-SM-C1YQI 60-69 years, male 1126.4
GTEX-13OW7-0011-R4b-SM-5O9CX 50-59 years, male 1121.1
GTEX-1IY9M-0011-R4a-SM-C1YQ2 60-69 years, male 1106.3
GTEX-1H1ZS-0011-R4b-SM-CKZO7 70-79 years, male 1103.4
GTEX-1F48J-0011-R4b-SM-9OSVX 50-59 years, female 1099.9
GTEX-1QMI2-0011-R4b-SM-F3K4R 60-69 years, male 1093.4
GTEX-X585-0011-R4B-SM-46MVH 50-59 years, male 1087.7
GTEX-1PPGY-0011-R4a-SM-F3K4F 60-69 years, male 1079.7
GTEX-117XS-0011-R4b-SM-GJ3PR 60-69 years, male 1074.4
GTEX-1LSVX-0011-R4b-SM-EXURP 60-69 years, male 1070.8
GTEX-13N1W-0011-R4a-SM-5MR52 70-79 years, male 1062.6
GTEX-WVLH-0011-R4A-SM-3MJFS 50-59 years, male 1061.6
GTEX-14C5O-0011-R4b-SM-G9ERF 60-69 years, male 1056.7
GTEX-14PQA-0011-R4b-SM-6AJBU 50-59 years, female 1052.6
GTEX-12WSD-0011-R4b-SM-5LZUA 60-69 years, female 1050.5
GTEX-13NYS-0011-R4b-SM-5MR3O 60-69 years, male 1046.8
GTEX-14BIM-0011-R4b-SM-5S2RK 60-69 years, female 1045.8
GTEX-1445S-0011-R4a-SM-5PNWN 60-69 years, male 1044.2
GTEX-144GL-0011-R4a-SM-5PNUI 50-59 years, male 1043.3
GTEX-13X6I-0011-R4b-SM-5PNU9 60-69 years, male 1032.6
GTEX-11NUK-0011-R4a-SM-DO12B 50-59 years, male 1031.4
GTEX-1HBPH-0011-R4a-SM-A96RX 40-49 years, female 1027.6
GTEX-15EO6-0011-R4a-SM-7KUKZ 50-59 years, male 1027.4
GTEX-1POEN-0011-R4b-SM-F3K4O 30-39 years, female 1021.7
GTEX-131XH-0011-R4b-SM-5DUWB 50-59 years, male 1019.6
GTEX-11ZVC-0011-R4a-SM-5BC6Z 50-59 years, female 1018.7
GTEX-12ZZY-0011-R4a-SM-GIN9F 60-69 years, male 1013.0
GTEX-NPJ7-0011-R4a-SM-2I3GJ 60-69 years, female 1011.5
GTEX-11DXY-0011-R4b-SM-GI4VR 60-69 years, male 1006.8
GTEX-ZVZQ-0011-R4b-SM-57WCZ 60-69 years, female 1003.4
GTEX-1313W-0011-R4b-SM-5KLZV 50-59 years, female 1000.6
GTEX-1EMGI-0011-R4b-SM-CJI2D 60-69 years, male 979.7
GTEX-1QP6S-0011-R4b-SM-F33ZY 40-49 years, male 976.1
GTEX-1GN73-0011-R4b-SM-9QEIK 60-69 years, male 971.9
GTEX-13112-0011-R4b-SM-5DUXL 50-59 years, male 967.4
GTEX-13X6K-0011-R4b-SM-5P9HO 60-69 years, female 959.6
GTEX-1JMOU-0011-R4b-SM-EY5ZL 60-69 years, female 959.4
GTEX-145LS-0011-R4b-SM-5S2UT 60-69 years, female 950.9
GTEX-13OW8-0011-R4a-SM-9WG6V 60-69 years, male 946.4
GTEX-ZAK1-0011-R4a-SM-6AJBK 50-59 years, female 945.9
GTEX-N7MT-0011-R4a-SM-2I3G9 60-69 years, female 945.7
GTEX-1H3NZ-0011-R4a-SM-CL54T 60-69 years, male 937.4
GTEX-1HFI6-0011-R4b-SM-A96RT 40-49 years, male 932.9
GTEX-ZZPT-0011-R4a-SM-GPRX4 50-59 years, male 928.0
GTEX-X4XX-0011-R4B-SM-46MWL 60-69 years, male 925.3
GTEX-1H3O1-0011-R4b-SM-A9SKE 60-69 years, male 907.0
GTEX-1A3MX-0011-R4b-SM-7EWFK 60-69 years, male 905.9
GTEX-WHSE-0011-R4A-SM-3P5ZN 20-29 years, male 899.2
GTEX-13OVJ-0011-R4b-SM-5P9H5 50-59 years, female 894.1
GTEX-14PN4-0011-R4a-SM-686ZT 50-59 years, male 890.3
GTEX-1O9I2-0011-R4b-SM-F3K4K 50-59 years, male 886.8
GTEX-1OJC4-0011-R4a-SM-F3K54 50-59 years, female 878.1
GTEX-1HB9E-0011-R4b-SM-ARZLS 50-59 years, male 865.3
GTEX-15DYW-0011-R4a-SM-6M46V 60-69 years, female 863.0
GTEX-YFC4-0011-R4a-SM-4RGLQ 40-49 years, female 862.2
GTEX-15CHQ-0011-R4a-SM-686ZX 60-69 years, male 851.2
GTEX-NPJ8-0011-R4a-SM-2HML3 40-49 years, male 845.6
GTEX-1RQEC-0011-R4b-SM-F342C 60-69 years, male 842.4
GTEX-13VXU-0011-R4b-SM-5O9CI 50-59 years, male 834.5
GTEX-13SLW-0011-R4b-SM-5S2W2 70-79 years, male 829.6
GTEX-131YS-0011-R4a-SM-5DUVL 60-69 years, female 826.0
GTEX-13RTJ-0011-R4b-SM-5PNX1 60-69 years, male 820.8
GTEX-TSE9-0011-R4A-SM-3DB7H 60-69 years, female 820.0
GTEX-1LH75-0011-R4a-SM-F2TAM 50-59 years, female 808.6
GTEX-QVJO-0011-R4A-SM-2S1QL 60-69 years, female 806.8
GTEX-XLM4-0011-R4B-SM-4AT5C 60-69 years, male 798.7
GTEX-13N2G-0011-R4b-SM-5MR54 60-69 years, male 784.0
GTEX-13OW5-0011-R4b-SM-5L3HS 60-69 years, male 770.0
GTEX-14ABY-0011-R4b-SM-5S2VN 50-59 years, male 762.8
GTEX-Q2AG-0011-R4A-SM-2HMKA 40-49 years, female 758.9
GTEX-S7SE-0011-R4A-SM-2XCDB 50-59 years, male 744.9
GTEX-1B996-0011-R4b-SM-9OSVO 60-69 years, male 743.7
GTEX-1HCU6-0011-R4b-SM-ARU74 60-69 years, female 737.0
GTEX-1N2EF-0011-R4a-SM-F341F 60-69 years, male 709.2
GTEX-15DCD-0011-R4a-SM-69LPB 70-79 years, female 708.4
GTEX-WZTO-0011-R4A-SM-3NMC7 40-49 years, male 706.7
GTEX-1AX9I-0011-R4b-SM-7EPIB 60-69 years, male 683.2
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AMYGDALA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

39.8
FANTOM5 sample id Sample description Scaled Tags Per Million
Amygdala
Scaled Tags Per Million: 39.8
FF:10151-102I7 76 years, female 39.8

AMYGDALA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

311.9
Pig sample Sample description nTPM
Amygdala
nTPM: 312.0
Samples: 4

Max nTPM: 463.5
Min nTPM: 185.3
Sample A Female 463.5
Sample B Female 329.0
Sample C Male 270.1
Sample D Male 185.3

AMYGDALA - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

384.6
Mouse sample Sample description nTPM
Amygdala
nTPM: 384.6
Samples: 4

Max nTPM: 410.2
Min nTPM: 361.1
Sample A Male 361.1
Sample B Male 399.3
Sample C Female 410.2
Sample D Female 367.8

AMYGDALA - Allen Mouse ISHi

In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.

Max subtype Expression energyi

Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.

0.0
Allen experiment id Experiment description Expression energy
Cortical subplate
Expression energy: 0.0
69261404 Antisense, RP_050118_01_D07, Mouse strain C57BL/6J (56 days, male) 0.0

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