MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:1088.4 nTPM
HPA Brain:251.1 nTPM
GTEx:1088.4 nTPM
FANTOM5:43.9 Scaled Tags Per Million
Pig:474.3 nTPM
Mouse:275.7 nTPM
Allen mouse:0.1 Expression energy
BRAIN - SINGLE CELL RNA EXPRESSION

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 251.1
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 198.6
1870 Female, age 42, unknown 236.1
2586 Male, age 75, left hemisphere 218.9
2219 Male, age 76, both hemispheres 212.1
2666 Male, age 74, left hemisphere 208.1
1827 Male, age 72, unknown 207.5
1830 Male, age 51, unknown 197.6
2828 Female, age 72, unknown 194.3
1833 Male, age 53, unknown 187.2
2019 Male, age 18, unknown 171.3
2411 Female, age 72, unknown 152.6
Dorsal raphe nucleus
nTPM: 207.8
2298 Female, age 72, unknown 229.8
2750 Male, age 76, both hemispheres 218.2
1828 Male, age 53, unknown 200.1
2047 Male, age 72, unknown 196.3
2016 Female, age 72, unknown 194.7
Inferior colliculus
nTPM: 212.9
1890 Male, age 53, unknown 229.9
2849 Male, age 72, unknown 225.6
1848 Female, age 42, unknown 201.2
2097 Female, age 72, unknown 194.9
Median raphe nucleus
nTPM: 245.9
2220 Male, age 76, midline 245.9
Periaquaductal grey, anterior
nTPM: 220.2
2502 Female, age 75, unknown 256.8
1795 Male, age 51, unknown 206.4
1947 Male, age 18, unknown 197.3
Periaquaductal grey, dorsal
nTPM: 203.1
2850 Male, age 76, both hemispheres 259.7
1840 Male, age 53, unknown 223.0
1831 Male, age 72, unknown 175.6
2464 Female, age 72, unknown 154.2
Periaquaductal grey, lateral
nTPM: 197.7
2140 Male, age 76, both hemispheres 215.3
2053 Male, age 18, unknown 193.0
2272 Male, age 74, both hemispheres 184.9
Pretectal area
nTPM: 202.6
2224 Female, age 72, unknown 243.8
2825 Male, age 18, unknown 219.7
1944 Female, age 72, unknown 218.4
1816 Male, age 51, unknown 208.2
1817 Female, age 42, unknown 206.2
2007 Male, age 72, unknown 204.8
2316 Male, age 76, right hemisphere 198.1
1815 Male, age 53, unknown 195.9
2667 Female, age 75, unknown 181.6
2407 Male, age 75, both hemispheres 176.8
2273 Male, age 74, both hemispheres 174.4
Red nucleus
nTPM: 214.2
2503 Female, age 72, unknown 258.9
1865 Male, age 51, unknown 247.7
1904 Male, age 53, unknown 226.7
1821 Female, age 72, unknown 222.7
2725 Female, age 75, unknown 220.1
2227 Male, age 72, unknown 217.3
2769 Male, age 72, unknown 211.1
2785 Male, age 18, unknown 209.9
1954 Female, age 42, unknown 195.0
2584 Male, age 75, left hemisphere 194.6
2588 Male, age 74, left hemisphere 189.4
2823 Male, age 76, right hemisphere 177.4
Substantia nigra
nTPM: 251.1
2699 Male, age 18, unknown 322.7
2665 Male, age 74, both hemispheres 284.2
2409 Female, age 72, unknown 283.0
1851 Male, age 51, unknown 275.2
1916 Female, age 42, unknown 268.9
2241 Male, age 72, unknown 253.6
1889 Female, age 72, unknown 237.5
1941 Male, age 53, unknown 216.8
2590 Female, age 75, unknown 210.1
2583 Male, age 75, right hemisphere 158.7
Superior colliculus
nTPM: 216.9
2587 Male, age 74, left hemisphere 265.1
1913 Female, age 42, unknown 251.3
1796 Male, age 53, unknown 246.3
2668 Female, age 75, unknown 231.2
1995 Male, age 72, unknown 218.3
2261 Male, age 18, unknown 199.8
1839 Male, age 51, unknown 191.5
1895 Male, age 76, right hemisphere 189.7
2087 Female, age 72, unknown 189.1
2664 Male, age 75, both hemispheres 187.1
Ventral tegmental area
nTPM: 236.3
2223 Female, age 72, unknown 304.0
1915 Female, age 42, unknown 277.7
2218 Male, age 76, both hemispheres 237.3
1942 Male, age 51, unknown 206.5
2021 Male, age 53, unknown 201.5
2410 Female, age 72, unknown 190.8

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 1088.4
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 1088.4
Samples: 183

Max nTPM: 2438.5
Min nTPM: 481.0
Std nTPM: 342.2
Median nTPM: 1028.0
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 2438.5
GTEX-1F75B-0011-R2a-SM-ARL8I 50-59 years, male 2287.0
GTEX-1IGQW-0011-R2b-SM-D4P26 60-69 years, male 2186.9
GTEX-11GS4-0011-R2a-SM-DO942 60-69 years, male 2138.5
GTEX-1H1ZS-0011-R2b-SM-CL54Q 70-79 years, male 1987.0
GTEX-R55E-0011-R2A-SM-EYYV9 20-29 years, male 1817.3
GTEX-ZV68-0011-R2a-SM-4YCDK 50-59 years, female 1750.0
GTEX-1117F-0011-R2b-SM-GI4VL 60-69 years, female 1724.9
GTEX-1I19N-0011-R2b-SM-GPRYG 70-79 years, male 1715.1
GTEX-1HBPH-0011-R2a-SM-GQ1DS 40-49 years, female 1702.1
GTEX-1MCQQ-0011-R2a-SM-F649V 60-69 years, male 1683.8
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 43.9
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 43.9
FF:10158-103A5 76 years, female 43.9

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 474.3
Pig sample Sample description nTPM
Substantia nigra
nTPM: 458.6
Samples: 4

Max nTPM: 773.2
Min nTPM: 285.5
Sample A Female 773.2
Sample B Female 424.1
Sample C Male 351.7
Sample D Male 285.5
Midbrain
nTPM: 443.0
Samples: 4

Max nTPM: 650.0
Min nTPM: 320.3
Sample A Female 650.0
Sample B Female 441.0
Sample C Male 360.6
Sample D Male 320.3
Periaqueductal gray
nTPM: 320.3
Samples: 3

Max nTPM: 338.6
Min nTPM: 295.6
Sample B Female 338.6
Sample C Male 326.7
Sample D Male 295.6
Superior colliculi
nTPM: 474.3
Samples: 4

Max nTPM: 680.0
Min nTPM: 350.3
Sample A Female 680.0
Sample B Female 458.4
Sample C Male 408.6
Sample D Male 350.3

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 275.7
Mouse sample Sample description nTPM
Midbrain
nTPM: 275.7
Samples: 4

Max nTPM: 306.1
Min nTPM: 228.5
Sample A Male 306.1
Sample B Male 274.9
Sample C Female 228.5
Sample D Female 293.3

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 0.1
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.1
69261404 Antisense, RP_050118_01_D07, Mouse strain C57BL/6J (56 days, male) 0.1

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