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BETA
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  • RPL27
EVOLUTIONARY RETINA Show tissue menu
BRAIN74 EYE4 ENDOCRINE TISSUES5 RESPIRATORY SYSTEM6 PROXIMAL DIGESTIVE TRACT5 GASTROINTESTINAL TRACT11 LIVER & GALLBLADDER4 PANCREAS1 KIDNEY & URINARY BLADDER4 MALE REPRODUCTIVE SYSTEM11 BREAST & FEMALE REPRODUCTIVE SYSTEM10 MUSCLE & VASCULAR TISSUE12 CONNECTIVE & SOFT TISSUE15 SKIN4 BONE MARROW & LYMPHOID TISSUES7
Select an organ to show its tissues
AMYGDALA ANGULAR GYRUS ANNECTANT GYRUS ANTERIOR CINGULATE GYRUS BASAL GANGLIA CAUDATE NUCLEUS CAUDATE PUTAMEN CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS CINGULATE CORTEX CLAUSTRUM CORPUS CALLOSUM CUNEUS DORSAL HIPPOCAMPUS DORSAL ROOT GANGLION DORSAL SPINAL CORD ENTORHINAL CORTEX FRONTAL CORTEX
FUSIFORM GYRUS GENICULATE NUCLEUS GLOBUS PALLIDUS GYRUS RECTUS HABENULA HIPPOCAMPAL FORMATION HYPOTHALAMUS HYPOTHALAMUS, ANTERIOR HYPOTHALAMUS, POSTERIOR INFERIOR FRONTAL GYRUS INFERIOR OCCIPITAL GYRUS INFERIOR TEMPORAL GYRUS INSULAR CORTEX LATERAL THALAMIC NUCLEI MEDULLA OBLONGATA MIDBRAIN MIDDLE FRONTAL GYRUS MIDDLE TEMPORAL GYRUS MOTOR AND PREFRONTAL CORTEX
MOTOR CORTEX OCCIPITAL CORTEX OCCIPITAL GYRUS OLFACTORY BULB ORBITAL GYRUS PERIAQUEDUCTAL GRAY PONS POSTCENTRAL GYRUS POSTERIOR CINGULATE CORTEX POSTERIOR PARAHIPPOCAMPAL GYRUS POSTERIOR THALAMUS PRECENTRAL GYRUS PREFRONTAL CORTEX PREOPTIC AREA PUTAMEN RETROSPLENIAL AND CINGULATE CORTEX RETROSPLENIAL CORTEX SEPTAL AREA SEPTUM
SOMATOSENSORY CORTEX SPINAL CORD SUBICULUM SUBSTANTIA NIGRA SUPERIOR COLLICULI SUPERIOR FRONTAL GYRUS SUPERIOR PARIETAL LOBULE SUPERIOR TEMPORAL GYRUS SUPRAMARGINAL GYRUS TEMPORAL CORTEX THALAMUS VENTRAL FOREBRAIN VENTRAL HIPPOCAMPUS VENTRAL PALLIDUM VENTRAL SPINAL CORD VISUAL CORTEX WHITE MATTER
CORNEA HARDERIAN GLAND LENS RETINA
ADRENAL GLAND PARATHYROID GLAND PINEAL GLAND PITUITARY GLAND THYROID GLAND
BRONCHUS LARYNX LUNG NASOPHARYNX OLFACTORY EPITHELIUM TRACHEA
ESOPHAGUS LIP ORAL MUCOSA SALIVARY GLAND TONGUE
CECUM COLON DUODENUM ILEUM JEJUNUM RECTUM SMALL INTESTINE STOMACH STOMACH (LOWER) STOMACH (MIDDLE) STOMACH (UPPER)
GALLBLADDER LIVER LIVER (LOBE 1) LIVER (LOBE 4)
PANCREAS
KIDNEY KIDNEY (CORTEX) KIDNEY (MEDULLA) URINARY BLADDER
BULBOURETHRAL GLAND DUCTUS DEFERENS EPIDIDYMIS MALE PREPUTIAL GLAND PENIS PROSTATE PROSTATE (ANTERIOR) PROSTATE (VENTRAL) SEMINAL VESICLE TESTIS URETHRAL GLAND
BREAST CERVIX CLITORIS ENDOMETRIUM FALLOPIAN TUBE FEMALE PREPUTIAL GLAND OVARY PLACENTA UTERUS VAGINA
AORTA BLOOD VESSEL DIAPHRAGM HEART ATRIUM HEART MUSCLE HEART VALVE HEART WALL PERIPHERAL VASCULATURE SKELETAL MUSCLE SMOOTH MUSCLE SMOOTH MUSCLE (INTESTINE) SMOOTH MUSCLE (UTERUS)
ABDOMINAL ADIPOSE TISSUE ADIPOSE TISSUE BROWN ADIPOSE TISSUE DURA MATER EAR CANAL EAR CARTILAGE JOINT CARTILAGE MENINGES ORBITAL ADIPOSE TISSUE PERICARDIUM PERITONEUM PLEURA SUBCUTANEOUS ADIPOSE TISSUE SYNOVIAL TISSUE VAGUS NERVE
EYE LID SKIN SKIN (BACK) SKIN (GROIN)
APPENDIX BLOOD, PBMC BONE MARROW LYMPH NODE SPLEEN THYMUS TONSIL
HumanMacaqueMouseRatPig
Protein evolution
Eye
Evolutionary methods
RETINA - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.

Scroll down to view mRNA expression data in more detail.

Consensus:365.7 nTPM
GTEx:365.7 nTPM
FANTOM5:56.2 Scaled Tags Per Million
Macaque:231.2 nTPM
Mouse:146.1 nTPM
Rat:112.2 nTPM
Pig:136.2 nTPM
EYE - SINGLE CELL RNA EXPRESSION
Explore single cell type data

RETINA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

365.7
GTEx sample id Sample description nTPM
Retina
Average nTPM: 365.7
Samples: 105

Max nTPM: 503.9
Min nTPM: 209.4
Std nTPM: 66.6
Median nTPM:
452_1 88 years, female 503.9
237_1 82 years, male 494.4
218_1 71 years, female 480.2
384_1 83 years, male 479.1
389_1 86 years, female 472.6
386_1 76 years, male 467.0
320_1 89 years, female 464.0
321_1 62 years, female 462.4
322_1 76 years, male 460.0
319_1 81 years, male 459.1
379_1 60 years, male 457.4
246_1 77 years, male 456.1
377_1 82 years, female 454.7
189_1 76 years, male 446.7
447_1 81 years, male 443.4
526_1 61 years, male 435.7
355_1 70 years, female 435.3
394_1 75 years, female 433.2
137_1 83 years, male 429.5
35_1 74 years, female 424.2
375_1 74 years, female 416.5
405_1 91 years, male 415.4
354_1 81 years, female 413.9
243_1 75 years, male 412.9
376_1 75 years, female 409.5
406_1 79 years, male 409.0
163_1 78 years, male 408.1
251_1 78 years, male 406.1
153_1 70 years, female 404.5
177_1 74 years, male 401.9
351_1 91 years, male 400.8
404_1 82 years, female 399.0
396_1 62 years, male 396.4
41_1 94 years, female 394.1
17_1 71 years, male 392.8
173_1 67 years, male 391.6
6_1 73 years, female 390.8
349_1 83 years, male 390.8
347_1 72 years, male 389.3
4_1 88 years, female 388.8
353_1 82 years, female 388.8
172_1 72 years, female 388.7
265_1 87 years, male 388.7
335_1 73 years, female 388.6
352_1 62 years, male 388.5
425_1 59 years, female 382.6
145_1 84 years, male 379.8
229_1 69 years, female 377.1
2_1 77 years, female 375.9
316_1 62 years, male 374.6
264_1 73 years, female 373.8
120_1 70 years, female 369.9
356_1 87 years, female 365.9
503_1 68 years, male 364.9
495_1 57 years, female 364.6
295_1 61 years, female 363.7
350_1 84 years, female 362.2
266_1 85 years, male 361.6
506_1 65 years, male 358.0
217_1 76 years, male 357.9
126_1 63 years, male 357.7
317_1 60 years, male 357.6
318_1 68 years, male 353.5
480_1 63 years, male 352.2
518_1 75 years, female 351.0
293_1 68 years, female 350.9
254_1 77 years, female 350.8
307_1 66 years, female 350.7
99_1 64 years, male 350.2
286_1 68 years, female 348.9
311_1 78 years, male 346.5
517_1 88 years, male 342.8
348_1 84 years, male 341.1
292_1 71 years, male 336.1
42_1 85 years, male 333.6
115_1 83 years, male 331.5
499_1 55 years, female 329.9
18_1 88 years, male 328.5
308_1 70 years, female 328.2
139_1 64 years, female 327.1
291_1 76 years, male 324.6
109_1 81 years, female 324.3
315_1 62 years, female 320.7
314_1 67 years, male 318.2
288_1 66 years, female 313.0
468_1 89 years, male 312.0
324_1 76 years, male 310.2
117_1 61 years, male 301.6
142_1 61 years, female 299.9
162_1 79 years, female 297.0
501_1 88 years, male 292.1
9_1 66 years, female 282.6
81_1 67 years, male 282.3
466_1 57 years, female 281.5
119_1 70 years, female 271.8
415_1 77 years, female 265.8
414_1 84 years, female 258.3
32_1 67 years, male 247.3
89_1 63 years, male 245.5
313_1 79 years, female 244.0
43_1 64 years, female 220.7
491_1 89 years, female 216.9
149_1 88 years, male 212.5
490_1 67 years, female 212.5
413_1 59 years, female 209.4
Show allShow less

RETINA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

56.2
FANTOM5 sample id Sample description Scaled Tags Per Million
Retina
Scaled Tags Per Million: 56.2
FF:10030-101E3 24-65 years, mixed 56.2

RETINA - Macaque RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

231.2
Macaque sample Sample description nTPM
Retina
nTPM: 231.2
Samples: 2

Max nTPM: 349.0
Min nTPM: 113.4
Sample A 113.4
Sample B 349.0

RETINA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

136.2
Pig sample Sample description nTPM
Retina
nTPM: 136.2
Samples: 4

Max nTPM: 156.6
Min nTPM: 112.1
Sample A Female 156.6
Sample B Female 137.7
Sample C Male 138.5
Sample D Male 112.1

RETINA - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

146.1
Mouse sample Sample description nTPM
Retina
nTPM: 146.1
Samples: 3

Max nTPM: 173.5
Min nTPM: 116.5
Sample D 173.5
Sample B 116.5
Sample C 148.2

RETINA - Rat RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

112.2
Rat sample Sample description nTPM
Retina
nTPM: 112.2
Samples: 4

Max nTPM: 115.6
Min nTPM: 108.2
Sample B 108.2
Sample A 115.0
Sample A 115.6
Sample A 110.0

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