RPL27
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BETA
  • SUMMARY

  • TISSUE

  • BRAIN

  • SINGLE CELL

  • IMMUNE

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  • EVOLUTION

  • RPL27
EVOLUTIONARY SUBSTANTIA NIGRA Show tissue menu
BRAIN74 EYE4 ENDOCRINE TISSUES5 RESPIRATORY SYSTEM6 PROXIMAL DIGESTIVE TRACT5 GASTROINTESTINAL TRACT11 LIVER & GALLBLADDER4 PANCREAS1 KIDNEY & URINARY BLADDER4 MALE REPRODUCTIVE SYSTEM11 BREAST & FEMALE REPRODUCTIVE SYSTEM10 MUSCLE & VASCULAR TISSUE12 CONNECTIVE & SOFT TISSUE15 SKIN4 BONE MARROW & LYMPHOID TISSUES7
Select an organ to show its tissues
AMYGDALA ANGULAR GYRUS ANNECTANT GYRUS ANTERIOR CINGULATE GYRUS BASAL GANGLIA CAUDATE NUCLEUS CAUDATE PUTAMEN CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS CINGULATE CORTEX CLAUSTRUM CORPUS CALLOSUM CUNEUS DORSAL HIPPOCAMPUS DORSAL ROOT GANGLION DORSAL SPINAL CORD ENTORHINAL CORTEX FRONTAL CORTEX
FUSIFORM GYRUS GENICULATE NUCLEUS GLOBUS PALLIDUS GYRUS RECTUS HABENULA HIPPOCAMPAL FORMATION HYPOTHALAMUS HYPOTHALAMUS, ANTERIOR HYPOTHALAMUS, POSTERIOR INFERIOR FRONTAL GYRUS INFERIOR OCCIPITAL GYRUS INFERIOR TEMPORAL GYRUS INSULAR CORTEX LATERAL THALAMIC NUCLEI MEDULLA OBLONGATA MIDBRAIN MIDDLE FRONTAL GYRUS MIDDLE TEMPORAL GYRUS MOTOR AND PREFRONTAL CORTEX
MOTOR CORTEX OCCIPITAL CORTEX OCCIPITAL GYRUS OLFACTORY BULB ORBITAL GYRUS PERIAQUEDUCTAL GRAY PONS POSTCENTRAL GYRUS POSTERIOR CINGULATE CORTEX POSTERIOR PARAHIPPOCAMPAL GYRUS POSTERIOR THALAMUS PRECENTRAL GYRUS PREFRONTAL CORTEX PREOPTIC AREA PUTAMEN RETROSPLENIAL AND CINGULATE CORTEX RETROSPLENIAL CORTEX SEPTAL AREA SEPTUM
SOMATOSENSORY CORTEX SPINAL CORD SUBICULUM SUBSTANTIA NIGRA SUPERIOR COLLICULI SUPERIOR FRONTAL GYRUS SUPERIOR PARIETAL LOBULE SUPERIOR TEMPORAL GYRUS SUPRAMARGINAL GYRUS TEMPORAL CORTEX THALAMUS VENTRAL FOREBRAIN VENTRAL HIPPOCAMPUS VENTRAL PALLIDUM VENTRAL SPINAL CORD VISUAL CORTEX WHITE MATTER
CORNEA HARDERIAN GLAND LENS RETINA
ADRENAL GLAND PARATHYROID GLAND PINEAL GLAND PITUITARY GLAND THYROID GLAND
BRONCHUS LARYNX LUNG NASOPHARYNX OLFACTORY EPITHELIUM TRACHEA
ESOPHAGUS LIP ORAL MUCOSA SALIVARY GLAND TONGUE
CECUM COLON DUODENUM ILEUM JEJUNUM RECTUM SMALL INTESTINE STOMACH STOMACH (LOWER) STOMACH (MIDDLE) STOMACH (UPPER)
GALLBLADDER LIVER LIVER (LOBE 1) LIVER (LOBE 4)
PANCREAS
KIDNEY KIDNEY (CORTEX) KIDNEY (MEDULLA) URINARY BLADDER
BULBOURETHRAL GLAND DUCTUS DEFERENS EPIDIDYMIS MALE PREPUTIAL GLAND PENIS PROSTATE PROSTATE (ANTERIOR) PROSTATE (VENTRAL) SEMINAL VESICLE TESTIS URETHRAL GLAND
BREAST CERVIX CLITORIS ENDOMETRIUM FALLOPIAN TUBE FEMALE PREPUTIAL GLAND OVARY PLACENTA UTERUS VAGINA
AORTA BLOOD VESSEL DIAPHRAGM HEART ATRIUM HEART MUSCLE HEART VALVE HEART WALL PERIPHERAL VASCULATURE SKELETAL MUSCLE SMOOTH MUSCLE SMOOTH MUSCLE (INTESTINE) SMOOTH MUSCLE (UTERUS)
ABDOMINAL ADIPOSE TISSUE ADIPOSE TISSUE BROWN ADIPOSE TISSUE DURA MATER EAR CANAL EAR CARTILAGE JOINT CARTILAGE MENINGES ORBITAL ADIPOSE TISSUE PERICARDIUM PERITONEUM PLEURA SUBCUTANEOUS ADIPOSE TISSUE SYNOVIAL TISSUE VAGUS NERVE
EYE LID SKIN SKIN (BACK) SKIN (GROIN)
APPENDIX BLOOD, PBMC BONE MARROW LYMPH NODE SPLEEN THYMUS TONSIL
HumanMacaqueMouseRatPig
Protein evolution
Brain
Evolutionary methods
SUBSTANTIA NIGRA - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.

Scroll down to view mRNA expression data in more detail.

HPA Brain:251.9 nTPM
GTEx:1088.4 nTPM
FANTOM5:43.9 Scaled Tags Per Million
Macaque:309.7 nTPM
Pig:518.5 nTPM
BRAIN - SINGLE CELL RNA EXPRESSION
Explore single cell type data

SUBSTANTIA NIGRA - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

251.9
Sample id Sample description nTPM
Substantia nigra
nTPM: 251.9
2699 Male, age 18, unknown 323.7
2665 Male, age 74, both hemispheres 285.4
2409 Female, age 72, unknown 283.8
1851 Male, age 51, unknown 276.0
1916 Female, age 42, unknown 269.9
2241 Male, age 72, unknown 254.3
1889 Female, age 72, unknown 238.3
1941 Male, age 53, unknown 217.4
2590 Female, age 75, unknown 210.7
2583 Male, age 75, right hemisphere 158.9

SUBSTANTIA NIGRA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

1088.4
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 1088.4
Samples: 183

Max nTPM: 2438.5
Min nTPM: 481.0
Std nTPM: 342.2
Median nTPM: 1028.0
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 2438.5
GTEX-1F75B-0011-R2a-SM-ARL8I 50-59 years, male 2287.0
GTEX-1IGQW-0011-R2b-SM-D4P26 60-69 years, male 2186.9
GTEX-11GS4-0011-R2a-SM-DO942 60-69 years, male 2138.5
GTEX-1H1ZS-0011-R2b-SM-CL54Q 70-79 years, male 1987.0
GTEX-R55E-0011-R2A-SM-EYYV9 20-29 years, male 1817.3
GTEX-ZV68-0011-R2a-SM-4YCDK 50-59 years, female 1750.0
GTEX-1117F-0011-R2b-SM-GI4VL 60-69 years, female 1724.9
GTEX-1I19N-0011-R2b-SM-GPRYG 70-79 years, male 1715.1
GTEX-1HBPH-0011-R2a-SM-GQ1DS 40-49 years, female 1702.1
GTEX-1MCQQ-0011-R2a-SM-F649V 60-69 years, male 1683.8
GTEX-1RLM8-0011-R2a-SM-EZ6N4 50-59 years, male 1666.4
GTEX-12WSH-0011-R2a-SM-5GU68 50-59 years, male 1661.6
GTEX-RN5K-0011-R2A-SM-GQ1CA 50-59 years, female 1616.6
GTEX-1LVAO-0011-R2a-SM-EYYX1 60-69 years, male 1613.7
GTEX-1O9I2-0011-R2b-SM-F3K53 50-59 years, male 1611.8
GTEX-1N5O9-0011-R2a-SM-G8LM1 60-69 years, male 1556.5
GTEX-12ZZX-0011-R2a-SM-5EGLG 40-49 years, female 1551.6
GTEX-1R9K4-0011-R2b-SM-G8LLF 60-69 years, male 1540.1
GTEX-1JMQK-0011-R2a-SM-EYYXQ 60-69 years, male 1535.3
GTEX-11TUW-0011-R2b-SM-DO92T 60-69 years, male 1530.8
GTEX-ZAJG-0011-R2a-SM-GNTAX 50-59 years, female 1530.7
GTEX-1A8G7-0011-R2a-SM-7IGQI 60-69 years, male 1525.6
GTEX-1EU9M-0011-R2b-SM-9QEH7 60-69 years, male 1510.9
GTEX-14BIM-0011-R2b-SM-69LQ6 60-69 years, female 1510.2
GTEX-1PWST-0011-R2b-SM-F3K5I 70-79 years, male 1489.4
GTEX-1HR98-0011-R2a-SM-ARL7A 60-69 years, male 1469.1
GTEX-15SHU-0011-R2a-SM-GPRXS 40-49 years, female 1437.1
GTEX-1JMQJ-0011-R2a-SM-F6493 50-59 years, male 1425.9
GTEX-1E1VI-0011-R2a-SM-9QEGS 50-59 years, male 1422.0
GTEX-YJ89-0011-R2b-SM-4RGLT 60-69 years, male 1381.9
GTEX-1LKK1-0011-R2b-SM-G8OLT 50-59 years, female 1373.4
GTEX-1C6VR-0011-R2a-SM-7RHGZ 60-69 years, male 1358.9
GTEX-1LG7Y-0011-R2b-SM-G8LMM 50-59 years, male 1352.8
GTEX-131XH-0011-R2b-SM-5DUVY 50-59 years, male 1346.8
GTEX-1GN1U-0011-R2a-SM-CL53A 50-59 years, female 1324.2
GTEX-1LB8K-0011-R2a-SM-EZ6MQ 50-59 years, male 1311.7
GTEX-T2IS-0011-R2A-SM-32QPF 20-29 years, female 1295.5
GTEX-11EMC-0011-R2b-SM-DO114 60-69 years, female 1294.5
GTEX-1F48J-0011-R2a-SM-CL535 50-59 years, female 1288.1
GTEX-139TS-0011-R2b-SM-5J1MX 60-69 years, male 1282.7
GTEX-13OVJ-0011-R2b-SM-5L3GP 50-59 years, female 1274.5
GTEX-1KD5A-0011-R2b-SM-G9EPP 50-59 years, male 1267.5
GTEX-1LSVX-0011-R2a-SM-G8OL9 60-69 years, male 1267.4
GTEX-1IY9M-0011-R2a-SM-D4P29 60-69 years, male 1267.3
GTEX-1LSNL-0011-R2a-SM-EZ6MK 50-59 years, male 1266.4
GTEX-1H3VE-0011-R2a-SM-CE6SA 40-49 years, male 1258.8
GTEX-1192X-0011-R2b-SM-GI4VV 50-59 years, male 1240.8
GTEX-1H3O1-0011-R2b-SM-CKZOT 60-69 years, male 1235.4
GTEX-13OVL-0011-R2b-SM-H65ZN 50-59 years, male 1231.1
GTEX-YFC4-0011-R2a-SM-4V6DZ 40-49 years, female 1211.8
GTEX-12WSD-0011-R2a-SM-5LZWB 60-69 years, female 1205.0
GTEX-12WSA-0011-R2a-SM-57WDK 60-69 years, male 1204.6
GTEX-1NV5F-0011-R2a-SM-G8LME 60-69 years, female 1200.6
GTEX-1J8Q2-0011-R2b-SM-EAZ2X 60-69 years, male 1194.8
GTEX-1I1CD-0011-R2a-SM-CM2T3 60-69 years, female 1193.0
GTEX-17HG3-0011-R2a-SM-7MGVX 30-39 years, female 1186.2
GTEX-ZE9C-0011-R2a-SM-4WKGH 60-69 years, male 1185.5
GTEX-XMD1-0011-R2B-SM-4AT5N 60-69 years, male 1172.5
GTEX-1IDJH-0011-R2a-SM-GPI9D 70-79 years, male 1169.5
GTEX-1QMI2-0011-R2b-SM-F648R 60-69 years, male 1163.3
GTEX-1I1GS-0011-R2b-SM-CMKHG 60-69 years, male 1161.4
GTEX-1JMPZ-0011-R2a-SM-G8LLS 30-39 years, male 1155.4
GTEX-12WSF-0011-R2a-SM-5DUVU 70-79 years, male 1152.1
GTEX-15G19-0011-R2b-SM-H6Q7S 60-69 years, male 1147.5
GTEX-T6MN-0011-R2A-SM-32QOW 50-59 years, male 1138.6
GTEX-13PDP-0011-R2b-SM-5O9DH 60-69 years, male 1137.3
GTEX-1F6IF-0011-R2b-SM-9QEHB 60-69 years, male 1135.3
GTEX-1HSMO-0011-R2a-SM-CL553 60-69 years, male 1133.7
GTEX-1NV8Z-0011-R2b-SM-F648N 60-69 years, male 1123.8
GTEX-132Q8-0011-R2b-SM-5EQ5Z 60-69 years, male 1118.0
GTEX-1CB4J-0011-R2a-SM-9WG5N 60-69 years, male 1116.1
GTEX-1JJ6O-0011-R2a-SM-EY5ZO 60-69 years, male 1111.8
GTEX-1POEN-0011-R2b-SM-G8LLP 30-39 years, female 1108.7
GTEX-1MA7X-0011-R2b-SM-EZ6MT 60-69 years, male 1106.4
GTEX-1IL2U-0011-R2a-SM-ARU6V 60-69 years, male 1101.3
GTEX-1GN2E-0011-R2a-SM-9WG7D 60-69 years, male 1100.7
GTEX-1H23P-0011-R2a-SM-CKZP3 60-69 years, male 1091.9
GTEX-OHPN-0011-R2A-SM-2I5FB 60-69 years, female 1090.6
GTEX-15RJE-0011-R2b-SM-79OMP 40-49 years, male 1089.6
GTEX-1KD4Q-0011-R2a-SM-F649I 40-49 years, male 1084.7
GTEX-ZDXO-0011-R2b-SM-4WKFG 60-69 years, male 1068.2
GTEX-1GZ2Q-0011-R2b-SM-9OSWO 40-49 years, male 1063.4
GTEX-13NYB-0011-R2a-SM-5MR3C 40-49 years, male 1060.4
GTEX-13G51-0011-R2b-SM-5LZXS 60-69 years, male 1054.4
GTEX-13FXS-0011-R2b-SM-5K7XX 50-59 years, male 1042.7
GTEX-1J1OQ-0011-R2b-SM-ARU88 40-49 years, female 1041.9
GTEX-147GR-0011-R2b-SM-5S2RQ 60-69 years, male 1033.3
GTEX-13O3Q-0011-R2b-SM-5KM3K 50-59 years, male 1032.7
GTEX-1JN1M-0011-R2b-SM-G9EPE 60-69 years, female 1032.5
GTEX-11WQC-0011-R2a-SM-DO927 60-69 years, male 1030.0
GTEX-1KWVE-0011-R2a-SM-G8OLX 30-39 years, male 1028.0
GTEX-11PRG-0011-R2a-SM-69LQ5 50-59 years, male 1025.5
GTEX-17EVP-0011-R2a-SM-7LG4W 40-49 years, male 1023.8
GTEX-16Z82-0011-R2b-SM-79OK9 60-69 years, male 1020.4
GTEX-1N2EE-0011-R2a-SM-F649F 60-69 years, male 1013.1
GTEX-1399T-0011-R2b-SM-5DUXM 60-69 years, male 1009.9
GTEX-1HFI6-0011-R2a-SM-CMKH5 40-49 years, male 1007.3
GTEX-13SLW-0011-R2b-SM-5O9C6 70-79 years, male 1007.1
GTEX-16GPK-0011-R2a-SM-GRR1F 60-69 years, male 1005.7
GTEX-1EMGI-0011-R2b-SM-9OSVS 60-69 years, male 999.6
GTEX-UTHO-0011-R2A-SM-3GIKC 60-69 years, male 999.1
GTEX-13CF2-0011-R2a-SM-5L3DC 60-69 years, male 998.7
GTEX-1H1DG-0011-R2a-SM-ADEIQ 70-79 years, male 992.4
GTEX-ZAK1-0011-R2a-SM-GPRX1 50-59 years, female 990.7
GTEX-11TTK-0011-R2b-SM-GJ3PU 60-69 years, female 989.9
GTEX-1RQED-0011-R2a-SM-F3K5T 60-69 years, male 988.2
GTEX-1RDX4-0011-R2b-SM-F649Z 50-59 years, female 982.8
GTEX-117XS-0011-R2b-SM-GI4VT 60-69 years, male 981.4
GTEX-XLM4-0011-R2B-SM-4AT5Z 60-69 years, male 978.1
GTEX-1MJK2-0011-R2b-SM-EXUS5 50-59 years, male 967.2
GTEX-14C5O-0011-R2a-SM-5ZZV2 60-69 years, male 964.9
GTEX-1GMR8-0011-R2a-SM-CE6RD 50-59 years, female 957.4
GTEX-12696-0011-R2b-SM-GHWPY 60-69 years, male 951.4
GTEX-1R9PO-0011-R2a-SM-F2TBH 60-69 years, female 949.4
GTEX-1B8SG-0011-R2b-SM-79OOT 50-59 years, male 948.8
GTEX-13O3O-0011-R2b-SM-5P9H1 60-69 years, female 936.1
GTEX-1GTWX-0011-R2b-SM-ADEH5 60-69 years, male 932.3
GTEX-1HT8W-0011-R2a-SM-CMKH9 30-39 years, male 915.7
GTEX-1CB4G-0011-R2a-SM-9QEGQ 60-69 years, male 911.5
GTEX-X585-0011-R2B-SM-46MVF 50-59 years, male 902.6
GTEX-15DCD-0011-R2b-SM-6LPIE 70-79 years, female 898.1
GTEX-14PJO-0011-R2a-SM-5ZZVF 60-69 years, male 894.9
GTEX-WL46-0011-R2A-SM-3LK6O 50-59 years, male 889.5
GTEX-1313W-0011-R2a-SM-5EGLF 50-59 years, female 885.4
GTEX-13NYS-0011-R2b-SM-5MR4G 60-69 years, male 873.5
GTEX-13SLX-0011-R2b-SM-5S2VP 50-59 years, female 872.0
GTEX-14PN4-0011-R2a-SM-6EU2Y 50-59 years, male 870.2
GTEX-1F6I4-0011-R2a-SM-CL536 60-69 years, male 862.0
GTEX-11NUK-0011-R2a-SM-GINAO 50-59 years, male 858.4
GTEX-13X6I-0011-R2b-SM-5PNWQ 60-69 years, male 857.6
GTEX-13X6K-0011-R2b-SM-5P9K3 60-69 years, female 857.2
GTEX-1P4AB-0011-R2a-SM-F649K 50-59 years, male 847.9
GTEX-11UD1-0011-R2b-SM-5BC6O 40-49 years, female 843.3
GTEX-14ASI-0011-R2b-SM-5YY9H 60-69 years, male 842.6
GTEX-13N2G-0011-R2a-SM-5MR4Q 60-69 years, male 841.3
GTEX-ZYY3-0011-R2a-SM-GNTB2 60-69 years, female 836.7
GTEX-111FC-0011-R2a-SM-GIN8S 60-69 years, male 832.1
GTEX-1EKGG-0011-R2a-SM-CE6R8 60-69 years, male 828.5
GTEX-15DYW-0011-R2b-SM-7KUKY 60-69 years, female 826.8
GTEX-ZZPT-0011-R2a-SM-GNTB1 50-59 years, male 825.3
GTEX-145LS-0011-R2a-SM-5PNZI 60-69 years, female 823.6
GTEX-NPJ7-0011-R2a-SM-2I3GF 60-69 years, female 822.5
GTEX-1HB9E-0011-R2b-SM-A96RW 50-59 years, male 815.0
GTEX-1445S-0011-R2b-SM-5PNUH 60-69 years, male 814.3
GTEX-1RQEC-0011-R2b-SM-EY5ZT 60-69 years, male 811.3
GTEX-11GSO-0011-R2a-SM-57WDF 60-69 years, male 811.2
GTEX-11DZ1-0011-R2a-SM-DNZZM 50-59 years, male 805.6
GTEX-1N2EF-0011-R2b-SM-F6482 60-69 years, male 795.9
GTEX-1PPGY-0011-R2b-SM-F33YW 60-69 years, male 793.5
GTEX-11ZTS-0011-R2b-SM-5BC75 60-69 years, female 793.4
GTEX-QVJO-0011-R2A-SM-2S1QK 60-69 years, female 792.9
GTEX-13OW8-0011-R2a-SM-5L3G2 60-69 years, male 790.0
GTEX-15EO6-0011-R2a-SM-6M46R 50-59 years, male 786.2
GTEX-14BIN-0011-R2a-SM-5S2RJ 50-59 years, female 780.1
GTEX-WHSE-0011-R2A-SM-3P5ZL 20-29 years, male 773.0
GTEX-1B933-0011-R2b-SM-7IGNM 50-59 years, female 762.5
GTEX-1LH75-0011-R2b-SM-EYYWQ 50-59 years, female 762.1
GTEX-S7SE-0011-R2A-SM-2XCDC 50-59 years, male 761.3
GTEX-14JG1-0011-R2a-SM-5ZZVE 40-49 years, male 759.8
GTEX-11GSP-0011-R2b-SM-9QEGE 60-69 years, female 759.4
GTEX-ZAB4-0011-R2a-SM-4RGNP 40-49 years, male 749.6
GTEX-1PIIG-0011-R2b-SM-F648W 30-39 years, male 743.2
GTEX-QMR6-0011-R2A-SM-32PKV 50-59 years, male 724.7
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 722.6
GTEX-1A3MX-0011-R2b-SM-7EWFL 60-69 years, male 720.2
GTEX-1GN73-0011-R2a-SM-CJI2V 60-69 years, male 718.4
GTEX-13RTJ-0011-R2a-SM-5PNW9 60-69 years, male 712.4
GTEX-13QJC-0011-R2b-SM-5PNUN 60-69 years, female 693.7
GTEX-13OW6-0011-R2a-SM-5L3HG 50-59 years, male 692.8
GTEX-1B996-0011-R2a-SM-7IGON 60-69 years, male 687.8
GTEX-RU72-0011-R2A-SM-2TF6O 50-59 years, female 668.7
GTEX-13OW7-0011-R2b-SM-H6Q8E 50-59 years, male 668.5
GTEX-QDT8-0011-R2A-SM-32PKQ 30-39 years, female 666.5
GTEX-1IKJJ-0011-R2b-SM-ARZLJ 60-69 years, male 627.8
GTEX-WVLH-0011-R2A-SM-3MJFJ 50-59 years, male 613.2
GTEX-X4XX-0011-R2A-SM-3P623 60-69 years, male 596.5
GTEX-15CHQ-0011-R2b-SM-6AJAD 60-69 years, male 592.7
GTEX-1I1GV-0011-R2a-SM-ARZLF 60-69 years, male 582.8
GTEX-1B8L1-0011-R2a-SM-9OSVL 60-69 years, male 560.2
GTEX-X4EP-0011-R2B-SM-3P625 60-69 years, female 559.3
GTEX-Q2AG-0011-R2A-SM-2HMIT 40-49 years, female 544.9
GTEX-15ER7-0011-R2a-SM-6M46O 20-29 years, female 481.0
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SUBSTANTIA NIGRA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

43.9
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 43.9
FF:10158-103A5 76 years, female 43.9

SUBSTANTIA NIGRA - Macaque RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

309.7
Macaque sample Sample description nTPM
Substantia nigra
nTPM: 309.7
Samples: 1

Max nTPM: 309.7
Min nTPM: 309.7
Sample A 309.7

SUBSTANTIA NIGRA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

518.5
Pig sample Sample description nTPM
Substantia nigra
nTPM: 518.5
Samples: 3

Max nTPM: 777.4
Min nTPM: 352.8
Sample A Female 777.4
Sample B Female 425.4
Sample C Male 352.8

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