On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.
No data
RNA expressioni
A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
Consensus:
93.8
nTPM
HPA Brain:
1058.0
nTPM
GTEx:
93.8
nTPM
FANTOM5:
358.6
Scaled Tags Per Million
Macaque:
562.8
nTPM
Mouse:
284.0
nTPM
Rat:
347.8
nTPM
Pig:
501.4
nTPM
MIDBRAIN - SINGLE NUCLEI RNA EXPRESSIONi
RNA expression in the single nuclei cluster types identified in this brain region visualized by a UMAP plot (top) and a bar chart (to the right).
- UMAP PLOT visualizes the cells in each cluster; where each dot corresponds to a cell. For each individual cell, mouseover reveals read count and which cluster the cell belongs to. Hovering over a cluster name will highlight the corresponding cluster in the bar chart two the right. There are 2 options for color schemes: 1) cell type color, which is based on cell type groups used in the Single cell type part of the Single cell resource and 2) cluster color, which assigns a unique color to each cluster. There are 3 options for cell intensities: 1) Intensity, which color the individual cells according to % of max (log2(read_count+1)/log2(max(read_count)+1)*100) in five different bins (<1%,<25%,<50%,<75%,≥75%) 2) Interval, which color the individual cells according to fixed interval of read count (0,1,2-4,5-9,>10) 3) Hexagon, which color the hexagon on average read count of all cells inside the hexagon
- The BAR CHART shows RNA expression (nTPM) in each cluster type. Hovering over the cluster name reveals nTPM value and number of included cells. Hovering over a bar highlights the corresponding cluster in the UMAP plot above. Color-coding can be toggled on the top of the page, between 2 options: 1) cell type color, which is based on cell type groups used in the Single cell type part of the Single cell resource and 2) cluster color, which assigns a unique color to each cluster.
SINGLE NUCLEI BRAIN - MIDBRAIN, NEURONSi
RNA expression in the single nuclei cluster types identified in this brain region visualized by a UMAP plot (top) and a bar chart (to the right).
- UMAP PLOT visualizes the cells in each cluster; where each dot corresponds to a cell. For each individual cell, mouseover reveals read count and which cluster the cell belongs to. Hovering over a cluster name will highlight the corresponding cluster in the bar chart two the right. There are 2 options for color schemes: 1) cell type color, which is based on cell type groups used in the Single cell type part of the Single cell resource and 2) cluster color, which assigns a unique color to each cluster. There are 3 options for cell intensities: 1) Intensity, which color the individual cells according to % of max (log2(read_count+1)/log2(max(read_count)+1)*100) in five different bins (<1%,<25%,<50%,<75%,≥75%) 2) Interval, which color the individual cells according to fixed interval of read count (0,1,2-4,5-9,>10) 3) Hexagon, which color the hexagon on average read count of all cells inside the hexagon
- The BAR CHART shows RNA expression (nTPM) in each cluster type. Hovering over the cluster name reveals nTPM value and number of included cells. Hovering over a bar highlights the corresponding cluster in the UMAP plot above. Color-coding can be toggled on the top of the page, between 2 options: 1) cell type color, which is based on cell type groups used in the Single cell type part of the Single cell resource and 2) cluster color, which assigns a unique color to each cluster.
Cell type color
Cluster color
Colored according to cell type group
Colored according to clusters
Read count filter:0
Cluster
Cell type
Expression (nCPM)
c-1
Inhibitory (GAD1/2) RORB+ K
c-2
Excitatory (VGLUT1) ETV1+ Z...
c-3
Inhibitory (GAD1/2) RORB+ K
c-4
Inhibitory (GAD1/2) RORB+ K
c-5
Unassigned
c-6
Tectum Excitatory (VGLUT2)
c-7
Inhibitory (GAD1/2)
c-8
Inhibitory (GAD1/2) TFAP2B+
c-9
Excitatory (VGLUT2)
c-10
Excitatory (VGLUT2)
c-11
Tectum Inhibitory (GAD1/2)
c-12
Excitatory (VGLUT2) TFAP2B+
c-13
Excitatory (VGLUT2)
c-14
Excitatory (VGLUT2)
c-15
Tectum Excitatory (VGLUT2)
c-16
Excitatory (VGLUT2)
c-17
Inhibitory (GAD1/2)
c-18
Excitatory (VGLUT2)
c-19
Inhibitory (GAD1/2)
c-20
Inhibitory (GAD1/2)
c-21
Excitatory (VGLUT2)
c-22
Excitatory (VGLUT2)
c-23
Inhibitory (GAD1/2) TFAP2B+
c-24
Inhibitory (GAD1/2)
c-25
Excitatory (VGLUT2) CRH+ CA...
c-26
Inhibitory (GAD1/2) SST+
c-27
Inhibitory (GAD1/2) NPY+
c-28
Inhibitory (GAD1/2) RORB+ K
c-29
Excitatory (VGLUT2) TFAP2B+
c-30
Excitatory (VGLUT2)
c-31
Dopaminergic TH+ LMX1A+ SLC...
c-32
Inhibitory (GAD1/2) PVALB+
c-33
Tegmentum Excitatory (VGLUT...
c-34
Excitatory (VGLUT2) LMX1A+
c-35
Tegmentum Inhibitory (GAD2)...
c-36
TPH2+
c-37
Inhibitory (GAD1/2) CXCL14+
c-38
Excitatory (VGLUT1) SATB2+
c-39
Inhibitory (GAD1/2) RORB+ K
c-40
Excitatory (VGLUT2) MEIS2+
c-41
Inhibitory (GAD1/2) TFAP2B+
c-42
Excitatory (VGLUT2)
c-43
Excitatory (VGLUT1)
c-44
SN Monoaminergic Inhibitory...
c-45
Inhibitory (GAD1/2)
c-46
Excitatory (VGLUT1) GRP+
c-47
Inhibitory (GAD1/2) PVALB+ ...
c-48
Excitatory (VGLUT1)
c-49
Inhibitory (GAD1/2) LAMP5+
c-50
Excitatory (VGLUT2) KIT+
c-51
Excitatory (VGLUT1) SLC5A7+
c-52
Inhibitory (GAD1/2) NOS1+ G...
Show allShow less
This data was generated by Siletti K et al. (2023), re-processed by HPA (see methods) and simplified for global overview
SINGLE NUCLEI BRAIN - MIDBRAIN, NON-NEURONALi
RNA expression in the single nuclei cluster types identified in this brain region visualized by a UMAP plot (top) and a bar chart (to the right).
- UMAP PLOT visualizes the cells in each cluster; where each dot corresponds to a cell. For each individual cell, mouseover reveals read count and which cluster the cell belongs to. Hovering over a cluster name will highlight the corresponding cluster in the bar chart two the right. There are 2 options for color schemes: 1) cell type color, which is based on cell type groups used in the Single cell type part of the Single cell resource and 2) cluster color, which assigns a unique color to each cluster. There are 3 options for cell intensities: 1) Intensity, which color the individual cells according to % of max (log2(read_count+1)/log2(max(read_count)+1)*100) in five different bins (<1%,<25%,<50%,<75%,≥75%) 2) Interval, which color the individual cells according to fixed interval of read count (0,1,2-4,5-9,>10) 3) Hexagon, which color the hexagon on average read count of all cells inside the hexagon
- The BAR CHART shows RNA expression (nTPM) in each cluster type. Hovering over the cluster name reveals nTPM value and number of included cells. Hovering over a bar highlights the corresponding cluster in the UMAP plot above. Color-coding can be toggled on the top of the page, between 2 options: 1) cell type color, which is based on cell type groups used in the Single cell type part of the Single cell resource and 2) cluster color, which assigns a unique color to each cluster.
Cell type color
Cluster color
Colored according to cell type group
Colored according to clusters
Read count filter:0
Cluster
Cell type
Expression (nCPM)
c-1
Oligodendrocytes
c-2
Oligodendrocytes
c-3
Microglia
c-4
Oligodendrocytes
c-5
Oligodendrocyte progenitor ...
c-6
Astrocytes
c-7
Oligodendrocytes
c-8
Oligodendrocytes
c-9
Oligodendrocytes
c-10
Oligodendrocytes
c-11
Oligodendrocytes
c-12
Astrocytes
c-13
Fibroblasts
c-14
NK-cells & T-cells
c-15
Macrophages
c-16
Ependymal cells
c-17
Capillary endothelial cells
c-18
Pericytes
c-19
Oligodendrocyte progenitor ...
c-20
Immature oligodendrocytes
c-21
Vascular smooth muscle cell
c-22
Oligodendrocyte progenitor ...
c-23
B-cells & Monocytes doublet
c-24
Arterial endothelial cells
c-25
CD44+ Mural cells
c-26
Bergmann glia
c-27
Oligodendrocytes & Lymphocy
c-28
Macrophages & Monocytes
Show allShow less
This data was generated by Siletti K et al. (2023), re-processed by HPA (see methods) and simplified for global overview
MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
1058.0
Sample id
Sample description
nTPM
Cuneiform nucleus nTPM: 794.6
2666
Male, age 74, left hemisphere
1235.5
2019
Male, age 18, unknown
1087.9
2586
Male, age 75, left hemisphere
897.7
1827
Male, age 72, unknown
828.7
2411
Female, age 72, unknown
773.9
2828
Female, age 72, unknown
749.1
2219
Male, age 76, both hemispheres
653.3
1870
Female, age 42, unknown
600.0
1830
Male, age 51, unknown
574.0
1833
Male, age 53, unknown
546.0
Dorsal raphe nucleus nTPM: 838.2
2298
Female, age 72, unknown
1003.7
2047
Male, age 72, unknown
916.7
2750
Male, age 76, both hemispheres
892.1
1828
Male, age 53, unknown
888.7
2016
Female, age 72, unknown
489.8
Inferior colliculus nTPM: 532.2
2097
Female, age 72, unknown
577.2
1890
Male, age 53, unknown
547.9
1848
Female, age 42, unknown
532.8
2849
Male, age 72, unknown
471.0
Median raphe nucleus nTPM: 1058.0
2220
Male, age 76, midline
1058.0
Periaquaductal grey, anterior nTPM: 761.4
1795
Male, age 51, unknown
860.8
2502
Female, age 75, unknown
747.2
1947
Male, age 18, unknown
676.1
Periaquaductal grey, dorsal nTPM: 547.5
1831
Male, age 72, unknown
643.1
2850
Male, age 76, both hemispheres
550.0
2464
Female, age 72, unknown
509.8
1840
Male, age 53, unknown
487.0
Periaquaductal grey, lateral nTPM: 510.1
2272
Male, age 74, both hemispheres
597.5
2053
Male, age 18, unknown
492.7
2140
Male, age 76, both hemispheres
440.0
Pretectal area nTPM: 863.1
1816
Male, age 51, unknown
1369.6
1817
Female, age 42, unknown
1209.6
1944
Female, age 72, unknown
1207.0
2007
Male, age 72, unknown
1203.6
1815
Male, age 53, unknown
971.4
2667
Female, age 75, unknown
701.7
2407
Male, age 75, both hemispheres
654.2
2273
Male, age 74, both hemispheres
653.0
2224
Female, age 72, unknown
646.1
2825
Male, age 18, unknown
507.6
2316
Male, age 76, right hemisphere
370.6
Red nucleus nTPM: 671.1
2785
Male, age 18, unknown
1044.3
2584
Male, age 75, left hemisphere
834.1
1821
Female, age 72, unknown
805.2
2588
Male, age 74, left hemisphere
664.4
2503
Female, age 72, unknown
652.6
1865
Male, age 51, unknown
641.4
1954
Female, age 42, unknown
618.8
2725
Female, age 75, unknown
579.6
1904
Male, age 53, unknown
579.2
2227
Male, age 72, unknown
558.6
2769
Male, age 72, unknown
549.9
2823
Male, age 76, right hemisphere
525.5
Substantia nigra nTPM: 892.5
1941
Male, age 53, unknown
1244.6
1916
Female, age 42, unknown
1108.1
1889
Female, age 72, unknown
1101.7
2583
Male, age 75, right hemisphere
910.8
1851
Male, age 51, unknown
883.0
2241
Male, age 72, unknown
820.5
2665
Male, age 74, both hemispheres
795.5
2409
Female, age 72, unknown
733.8
2590
Female, age 75, unknown
698.6
2699
Male, age 18, unknown
628.5
Superior colliculus nTPM: 744.0
2668
Female, age 75, unknown
1181.2
2087
Female, age 72, unknown
975.8
2261
Male, age 18, unknown
806.9
1796
Male, age 53, unknown
802.2
1913
Female, age 42, unknown
698.2
2587
Male, age 74, left hemisphere
671.1
2664
Male, age 75, both hemispheres
651.4
1995
Male, age 72, unknown
563.1
1839
Male, age 51, unknown
550.0
1895
Male, age 76, right hemisphere
540.5
Ventral tegmental area nTPM: 775.1
2218
Male, age 76, both hemispheres
864.4
2410
Female, age 72, unknown
850.9
1915
Female, age 42, unknown
821.6
2223
Female, age 72, unknown
777.0
1942
Male, age 51, unknown
703.8
2021
Male, age 53, unknown
633.0
MIDBRAIN - GTEx RNA-seqi
RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.
Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
93.8
GTEx sample id
Sample description
nTPM
Brain - Substantia nigra Average nTPM: 93.8
Samples: 183
Max nTPM: 378.3
Min nTPM: 37.8
Std nTPM: 46.4
Median nTPM: 82.2
GTEX-RU72-0011-R2A-SM-2TF6O
50-59 years, female
378.3
GTEX-Z93S-0011-R2a-SM-4RGNG
50-59 years, male
355.2
GTEX-15ER7-0011-R2a-SM-6M46O
20-29 years, female
253.5
GTEX-1313W-0011-R2a-SM-5EGLF
50-59 years, female
222.0
GTEX-1CB4J-0011-R2a-SM-9WG5N
60-69 years, male
206.7
GTEX-1B8L1-0011-R2a-SM-9OSVL
60-69 years, male
203.6
GTEX-117XS-0011-R2b-SM-GI4VT
60-69 years, male
186.7
GTEX-13OW7-0011-R2b-SM-H6Q8E
50-59 years, male
180.9
GTEX-11DZ1-0011-R2a-SM-DNZZM
50-59 years, male
174.3
GTEX-Q2AG-0011-R2A-SM-2HMIT
40-49 years, female
168.6
GTEX-1B933-0011-R2b-SM-7IGNM
50-59 years, female
158.9
GTEX-1HT8W-0011-R2a-SM-CMKH9
30-39 years, male
157.8
GTEX-13O3Q-0011-R2b-SM-5KM3K
50-59 years, male
157.5
GTEX-11NUK-0011-R2a-SM-GINAO
50-59 years, male
155.9
GTEX-1GN73-0011-R2a-SM-CJI2V
60-69 years, male
155.7
GTEX-1EMGI-0011-R2b-SM-9OSVS
60-69 years, male
146.8
GTEX-14C5O-0011-R2a-SM-5ZZV2
60-69 years, male
145.3
GTEX-QDT8-0011-R2A-SM-32PKQ
30-39 years, female
144.6
GTEX-1N2EF-0011-R2b-SM-F6482
60-69 years, male
142.0
GTEX-1HB9E-0011-R2b-SM-A96RW
50-59 years, male
141.8
GTEX-15CHQ-0011-R2b-SM-6AJAD
60-69 years, male
141.0
GTEX-WHSE-0011-R2A-SM-3P5ZL
20-29 years, male
136.6
GTEX-QVJO-0011-R2A-SM-2S1QK
60-69 years, female
134.8
GTEX-11GSP-0011-R2b-SM-9QEGE
60-69 years, female
133.9
GTEX-1N5O9-0011-R2a-SM-G8LM1
60-69 years, male
133.6
GTEX-1LH75-0011-R2b-SM-EYYWQ
50-59 years, female
132.3
GTEX-1CB4G-0011-R2a-SM-9QEGQ
60-69 years, male
130.4
GTEX-145LS-0011-R2a-SM-5PNZI
60-69 years, female
129.6
GTEX-1IKJJ-0011-R2b-SM-ARZLJ
60-69 years, male
127.7
GTEX-14BIM-0011-R2b-SM-69LQ6
60-69 years, female
127.6
GTEX-1399T-0011-R2b-SM-5DUXM
60-69 years, male
126.5
GTEX-1B996-0011-R2a-SM-7IGON
60-69 years, male
126.4
GTEX-1PPGY-0011-R2b-SM-F33YW
60-69 years, male
126.0
GTEX-1PIIG-0011-R2b-SM-F648W
30-39 years, male
124.4
GTEX-WVLH-0011-R2A-SM-3MJFJ
50-59 years, male
121.2
GTEX-1IY9M-0011-R2a-SM-D4P29
60-69 years, male
120.2
GTEX-1EKGG-0011-R2a-SM-CE6R8
60-69 years, male
119.7
GTEX-13OW6-0011-R2a-SM-5L3HG
50-59 years, male
117.5
GTEX-1HFI6-0011-R2a-SM-CMKH5
40-49 years, male
117.1
GTEX-1E1VI-0011-R2a-SM-9QEGS
50-59 years, male
114.4
GTEX-11TUW-0011-R2b-SM-DO92T
60-69 years, male
110.9
GTEX-14JG1-0011-R2a-SM-5ZZVE
40-49 years, male
110.9
GTEX-X585-0011-R2B-SM-46MVF
50-59 years, male
110.7
GTEX-S7SE-0011-R2A-SM-2XCDC
50-59 years, male
109.3
GTEX-NPJ7-0011-R2a-SM-2I3GF
60-69 years, female
107.1
GTEX-ZAK1-0011-R2a-SM-GPRX1
50-59 years, female
106.6
GTEX-13SLX-0011-R2b-SM-5S2VP
50-59 years, female
106.2
GTEX-111FC-0011-R2a-SM-GIN8S
60-69 years, male
105.2
GTEX-1A3MX-0011-R2b-SM-7EWFL
60-69 years, male
104.5
GTEX-1F6I4-0011-R2a-SM-CL536
60-69 years, male
104.5
GTEX-15DYW-0011-R2b-SM-7KUKY
60-69 years, female
103.6
GTEX-XLM4-0011-R2B-SM-4AT5Z
60-69 years, male
102.4
GTEX-OHPN-0011-R2A-SM-2I5FB
60-69 years, female
102.1
GTEX-1QMI2-0011-R2b-SM-F648R
60-69 years, male
100.9
GTEX-1JMQK-0011-R2a-SM-EYYXQ
60-69 years, male
100.1
GTEX-13OVL-0011-R2b-SM-H65ZN
50-59 years, male
99.7
GTEX-1JMQJ-0011-R2a-SM-F6493
50-59 years, male
99.2
GTEX-13G51-0011-R2b-SM-5LZXS
60-69 years, male
98.8
GTEX-13RTJ-0011-R2a-SM-5PNW9
60-69 years, male
98.8
GTEX-1B8SG-0011-R2b-SM-79OOT
50-59 years, male
98.7
GTEX-17EVP-0011-R2a-SM-7LG4W
40-49 years, male
97.7
GTEX-1GN1U-0011-R2a-SM-CL53A
50-59 years, female
96.6
GTEX-1N2EE-0011-R2a-SM-F649F
60-69 years, male
96.2
GTEX-QMR6-0011-R2A-SM-32PKV
50-59 years, male
95.7
GTEX-1A8G7-0011-R2a-SM-7IGQI
60-69 years, male
94.7
GTEX-ZDXO-0011-R2b-SM-4WKFG
60-69 years, male
94.6
GTEX-1445S-0011-R2b-SM-5PNUH
60-69 years, male
94.1
GTEX-1MA7X-0011-R2b-SM-EZ6MT
60-69 years, male
93.6
GTEX-1LSVX-0011-R2a-SM-G8OL9
60-69 years, male
93.0
GTEX-1LSNL-0011-R2a-SM-EZ6MK
50-59 years, male
92.8
GTEX-1RDX4-0011-R2b-SM-F649Z
50-59 years, female
92.5
GTEX-1GN2E-0011-R2a-SM-9WG7D
60-69 years, male
92.3
GTEX-1GTWX-0011-R2b-SM-ADEH5
60-69 years, male
91.8
GTEX-15SHU-0011-R2a-SM-GPRXS
40-49 years, female
91.0
GTEX-1HR98-0011-R2a-SM-ARL7A
60-69 years, male
89.2
GTEX-16Z82-0011-R2b-SM-79OK9
60-69 years, male
88.7
GTEX-ZE9C-0011-R2a-SM-4WKGH
60-69 years, male
88.5
GTEX-1EU9M-0011-R2b-SM-9QEH7
60-69 years, male
87.9
GTEX-ZAB4-0011-R2a-SM-4RGNP
40-49 years, male
87.9
GTEX-1LB8K-0011-R2a-SM-EZ6MQ
50-59 years, male
86.5
GTEX-13O3O-0011-R2b-SM-5P9H1
60-69 years, female
86.4
GTEX-1JJ6O-0011-R2a-SM-EY5ZO
60-69 years, male
86.4
GTEX-12ZZX-0011-R2a-SM-5EGLG
40-49 years, female
86.3
GTEX-T2IS-0011-R2A-SM-32QPF
20-29 years, female
85.3
GTEX-13NYS-0011-R2b-SM-5MR4G
60-69 years, male
85.1
GTEX-13OW8-0011-R2a-SM-5L3G2
60-69 years, male
85.0
GTEX-T6MN-0011-R2A-SM-32QOW
50-59 years, male
84.7
GTEX-1I1GV-0011-R2a-SM-ARZLF
60-69 years, male
83.3
GTEX-11GSO-0011-R2a-SM-57WDF
60-69 years, male
83.1
GTEX-12WSD-0011-R2a-SM-5LZWB
60-69 years, female
82.7
GTEX-16GPK-0011-R2a-SM-GRR1F
60-69 years, male
82.5
GTEX-1LVA9-0011-R2a-SM-EZ6MJ
50-59 years, male
82.2
GTEX-1H1ZS-0011-R2b-SM-CL54Q
70-79 years, male
81.4
GTEX-11EMC-0011-R2b-SM-DO114
60-69 years, female
81.3
GTEX-1KD4Q-0011-R2a-SM-F649I
40-49 years, male
81.1
GTEX-13CF2-0011-R2a-SM-5L3DC
60-69 years, male
81.0
GTEX-YJ89-0011-R2b-SM-4RGLT
60-69 years, male
80.3
GTEX-1IGQW-0011-R2b-SM-D4P26
60-69 years, male
80.1
GTEX-ZV68-0011-R2a-SM-4YCDK
50-59 years, female
79.8
GTEX-1KD5A-0011-R2b-SM-G9EPP
50-59 years, male
79.2
GTEX-13FXS-0011-R2b-SM-5K7XX
50-59 years, male
79.0
GTEX-13N2G-0011-R2a-SM-5MR4Q
60-69 years, male
78.9
GTEX-YFC4-0011-R2a-SM-4V6DZ
40-49 years, female
78.6
GTEX-1PWST-0011-R2b-SM-F3K5I
70-79 years, male
78.5
GTEX-14BIN-0011-R2a-SM-5S2RJ
50-59 years, female
77.7
GTEX-1H3O1-0011-R2b-SM-CKZOT
60-69 years, male
77.7
GTEX-14PJO-0011-R2a-SM-5ZZVF
60-69 years, male
77.6
GTEX-1I1CD-0011-R2a-SM-CM2T3
60-69 years, female
77.5
GTEX-1J8Q2-0011-R2b-SM-EAZ2X
60-69 years, male
77.3
GTEX-1R9PO-0011-R2a-SM-F2TBH
60-69 years, female
77.3
GTEX-11GS4-0011-R2a-SM-DO942
60-69 years, male
76.9
GTEX-1F6IF-0011-R2b-SM-9QEHB
60-69 years, male
76.9
GTEX-1I19N-0011-R2b-SM-GPRYG
70-79 years, male
76.9
GTEX-1JN1M-0011-R2b-SM-G9EPE
60-69 years, female
76.5
GTEX-147GR-0011-R2b-SM-5S2RQ
60-69 years, male
76.1
GTEX-1LVAO-0011-R2a-SM-EYYX1
60-69 years, male
76.1
GTEX-11ZTS-0011-R2b-SM-5BC75
60-69 years, female
75.5
GTEX-ZZPT-0011-R2a-SM-GNTB1
50-59 years, male
75.4
GTEX-13X6I-0011-R2b-SM-5PNWQ
60-69 years, male
75.1
GTEX-1RQEC-0011-R2b-SM-EY5ZT
60-69 years, male
75.1
GTEX-15DCD-0011-R2b-SM-6LPIE
70-79 years, female
73.3
GTEX-132Q8-0011-R2b-SM-5EQ5Z
60-69 years, male
73.0
GTEX-1H1DG-0011-R2a-SM-ADEIQ
70-79 years, male
71.3
GTEX-14PN4-0011-R2a-SM-6EU2Y
50-59 years, male
71.0
GTEX-13NYB-0011-R2a-SM-5MR3C
40-49 years, male
70.5
GTEX-1R9K4-0011-R2b-SM-G8LLF
60-69 years, male
70.4
GTEX-12696-0011-R2b-SM-GHWPY
60-69 years, male
70.2
GTEX-15RJE-0011-R2b-SM-79OMP
40-49 years, male
69.7
GTEX-1F48J-0011-R2a-SM-CL535
50-59 years, female
69.4
GTEX-11PRG-0011-R2a-SM-69LQ5
50-59 years, male
69.1
GTEX-1C6VR-0011-R2a-SM-7RHGZ
60-69 years, male
68.9
GTEX-1117F-0011-R2b-SM-GI4VL
60-69 years, female
68.6
GTEX-1I1GS-0011-R2b-SM-CMKHG
60-69 years, male
67.9
GTEX-1LKK1-0011-R2b-SM-G8OLT
50-59 years, female
67.7
GTEX-13QJC-0011-R2b-SM-5PNUN
60-69 years, female
66.1
GTEX-17HG3-0011-R2a-SM-7MGVX
30-39 years, female
66.1
GTEX-1J1OQ-0011-R2b-SM-ARU88
40-49 years, female
65.9
GTEX-12WSF-0011-R2a-SM-5DUVU
70-79 years, male
64.8
GTEX-1GMR8-0011-R2a-SM-CE6RD
50-59 years, female
64.6
GTEX-11WQC-0011-R2a-SM-DO927
60-69 years, male
63.9
GTEX-131XH-0011-R2b-SM-5DUVY
50-59 years, male
63.8
GTEX-ZAJG-0011-R2a-SM-GNTAX
50-59 years, female
63.4
GTEX-1JMPZ-0011-R2a-SM-G8LLS
30-39 years, male
63.3
GTEX-1P4AB-0011-R2a-SM-F649K
50-59 years, male
61.8
GTEX-1MCQQ-0011-R2a-SM-F649V
60-69 years, male
60.8
GTEX-15G19-0011-R2b-SM-H6Q7S
60-69 years, male
60.3
GTEX-13OVJ-0011-R2b-SM-5L3GP
50-59 years, female
59.8
GTEX-R55E-0011-R2A-SM-EYYV9
20-29 years, male
59.3
GTEX-14ASI-0011-R2b-SM-5YY9H
60-69 years, male
59.0
GTEX-X4XX-0011-R2A-SM-3P623
60-69 years, male
58.2
GTEX-1KWVE-0011-R2a-SM-G8OLX
30-39 years, male
57.4
GTEX-1POEN-0011-R2b-SM-G8LLP
30-39 years, female
57.4
GTEX-1NV8Z-0011-R2b-SM-F648N
60-69 years, male
57.3
GTEX-1F75B-0011-R2a-SM-ARL8I
50-59 years, male
57.2
GTEX-12WSH-0011-R2a-SM-5GU68
50-59 years, male
57.0
GTEX-1H23P-0011-R2a-SM-CKZP3
60-69 years, male
56.7
GTEX-UTHO-0011-R2A-SM-3GIKC
60-69 years, male
56.5
GTEX-RN5K-0011-R2A-SM-GQ1CA
50-59 years, female
56.3
GTEX-1HBPH-0011-R2a-SM-GQ1DS
40-49 years, female
55.8
GTEX-1MJK2-0011-R2b-SM-EXUS5
50-59 years, male
55.6
GTEX-139TS-0011-R2b-SM-5J1MX
60-69 years, male
54.8
GTEX-1RLM8-0011-R2a-SM-EZ6N4
50-59 years, male
54.8
GTEX-1LG7Y-0011-R2b-SM-G8LMM
50-59 years, male
54.7
GTEX-1IDJH-0011-R2a-SM-GPI9D
70-79 years, male
54.6
GTEX-1192X-0011-R2b-SM-GI4VV
50-59 years, male
54.3
GTEX-1IL2U-0011-R2a-SM-ARU6V
60-69 years, male
53.4
GTEX-1GZ2Q-0011-R2b-SM-9OSWO
40-49 years, male
51.7
GTEX-13X6K-0011-R2b-SM-5P9K3
60-69 years, female
51.4
GTEX-12WSA-0011-R2a-SM-57WDK
60-69 years, male
50.0
GTEX-1HSMO-0011-R2a-SM-CL553
60-69 years, male
49.7
GTEX-XMD1-0011-R2B-SM-4AT5N
60-69 years, male
49.5
GTEX-1H3VE-0011-R2a-SM-CE6SA
40-49 years, male
49.0
GTEX-11UD1-0011-R2b-SM-5BC6O
40-49 years, female
48.6
GTEX-WL46-0011-R2A-SM-3LK6O
50-59 years, male
48.6
GTEX-11TTK-0011-R2b-SM-GJ3PU
60-69 years, female
48.3
GTEX-1RQED-0011-R2a-SM-F3K5T
60-69 years, male
48.3
GTEX-ZYY3-0011-R2a-SM-GNTB2
60-69 years, female
47.3
GTEX-15EO6-0011-R2a-SM-6M46R
50-59 years, male
46.8
GTEX-1O9I2-0011-R2b-SM-F3K53
50-59 years, male
46.2
GTEX-13PDP-0011-R2b-SM-5O9DH
60-69 years, male
41.4
GTEX-1NV5F-0011-R2a-SM-G8LME
60-69 years, female
41.1
GTEX-13SLW-0011-R2b-SM-5O9C6
70-79 years, male
38.6
GTEX-X4EP-0011-R2B-SM-3P625
60-69 years, female
37.8
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MIDBRAIN - FANTOM5 CAGEi
RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.
Max subtype Scaled Tags Per Millioni
Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
562.8
Macaque sample
Sample description
nTPM
Substantia nigra nTPM: 556.8
Samples: 1
Max nTPM: 556.8
Min nTPM: 556.8
Sample A
556.8
Midbrain nTPM: 445.3
Samples: 1
Max nTPM: 445.3
Min nTPM: 445.3
Sample A
445.3
Superior colliculi nTPM: 562.8
Samples: 1
Max nTPM: 562.8
Min nTPM: 562.8
Sample A
562.8
MIDBRAIN - Pig RNA-seqi
RNA-seq data obtained from pig brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
501.4
Pig sample
Sample description
nTPM
Substantia nigra nTPM: 501.4
Samples: 3
Max nTPM: 631.2
Min nTPM: 285.3
Sample A
Female
587.7
Sample B
Female
285.3
Sample C
Male
631.2
Midbrain nTPM: 442.3
Samples: 3
Max nTPM: 691.7
Min nTPM: 283.8
Sample B
Female
283.8
Sample C
Male
691.7
Sample D
Male
351.4
Periaqueductal gray nTPM: 276.7
Samples: 3
Max nTPM: 374.8
Min nTPM: 217.5
Sample B
Female
237.7
Sample C
Male
374.8
Sample D
Male
217.5
Superior colliculi nTPM: 432.9
Samples: 4
Max nTPM: 712.3
Min nTPM: 214.4
Sample A
Female
368.8
Sample B
Female
214.4
Sample C
Male
712.3
Sample D
Male
436.0
MIDBRAIN - Mouse RNA-seqi
RNA-seq data obtained from mouse brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
284.0
Mouse sample
Sample description
nTPM
Midbrain nTPM: 284.0
Samples: 4
Max nTPM: 323.1
Min nTPM: 213.3
Sample A
213.3
Sample B
286.7
Sample C
312.9
Sample D
323.1
MIDBRAIN - Rat RNA-seq
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
347.8
Rat sample
Sample description
nTPM
Midbrain nTPM: 347.8
Samples: 4
Max nTPM: 363.9
Min nTPM: 331.0
Sample A
363.9
Sample A
344.6
Sample A
331.0
Sample A
351.8
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The Human Protein Atlas project is funded
