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TISSUE PRIMARY DATA HIPPOCAMPAL FORMATION Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON DUODENUM
ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN NASOPHARYNX
ORAL MUCOSA OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN SMALL INTESTINE
SMOOTH MUSCLE SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Tissue proteome
Hippocampal formation
HIPPOCAMPAL FORMATION - Expression summary
Protein expression
Hippocampusi

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

h
m
l
n
Glial cells: Not detected
Neuronal cells: Low
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Consensus:8.1 nTPM
HPA Brain:6.7 nTPM
GTEx:8.1 nTPM
FANTOM5:14.5 Scaled Tags Per Million
Pig:8.4 nTPM
Mouse:9.8 nTPM
Allen mouse:0.3 Expression energy

HIPPOCAMPUS - Antibody stainingi

Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.

Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.

Antibody HPA038404
Glial cells Not detected
Neuronal cells Low



HIPPOCAMPAL FORMATION - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

6.7
Sample id Sample description nTPM
Hippocampus
nTPM: 6.6
1911 Female, age 85, right hemisphere 7.6
1855 Male, age 76, left hemisphere 7.2
2148 Female, age 91, left hemisphere 6.4
2621 Female, age 67, right hemisphere 6.4
1898 Male, age 80, left hemisphere 5.9
2529 Female, age 94, left hemisphere 5.8
Dentate gyrus
nTPM: 6.3
2010 Male, age 76, both hemispheres 6.8
2246 Female, age 85, both hemispheres 6.5
2531 Female, age 67, both hemispheres 6.4
1927 Female, age 91, both hemispheres 6.3
2528 Male, age 74, both hemispheres 6.3
2530 Female, age 94, left hemisphere 5.4
Entorhinal gyrus
nTPM: 6.3
2613 Female, age 94, left hemisphere 7.3
1787 Male, age 76, left hemisphere 7.0
2117 Female, age 91, right hemisphere 6.3
1938 Female, age 85, left hemisphere 5.8
2686 Male, age 75, right hemisphere 5.8
2764 Male, age 80, right hemisphere 5.7
Hippocampus, CA1
nTPM: 6.0
2045 Male, age 76, both hemispheres 6.6
2527 Male, age 74, both hemispheres 6.4
1873 Female, age 85, both hemispheres 6.3
2082 Female, age 91, right hemisphere 6.1
2749 Male, age 80, left hemisphere 4.7
Hippocampus, CA2
nTPM: 6.0
1940 Female, age 85, left hemisphere 6.9
1892 Male, age 76, both hemispheres 6.2
2249 Male, age 74, both hemispheres 6.1
2437 Female, age 94, left hemisphere 5.9
2113 Female, age 91, right hemisphere 5.6
1963 Male, age 80, left hemisphere 5.1
Hippocampus, CA3
nTPM: 6.3
2436 Male, age 74, both hemispheres 7.0
1891 Female, age 85, both hemispheres 6.7
1867 Male, age 76, both hemispheres 6.2
2620 Female, age 94, left hemisphere 6.1
2861 Female, age 67, both hemispheres 6.0
2137 Male, age 80, left hemisphere 5.9
Parahippocampal cortex
nTPM: 6.3
2018 Male, age 76, both hemispheres 7.6
2622 Female, age 67, right hemisphere 7.1
2245 Female, age 91, both hemispheres 6.9
2250 Female, age 67, right hemisphere 6.4
2532 Female, age 72, left hemisphere 6.4
1850 Male, age 80, both hemispheres 6.3
1990 Female, age 91, right hemisphere 5.9
2693 Female, age 94, both hemispheres 5.7
2692 Male, age 74, both hemispheres 5.6
1933 Female, age 85, both hemispheres 5.4
Perirhinal gyrus
nTPM: 6.7
2848 Male, age 76, right hemisphere 7.4
2521 Female, age 94, right hemisphere 6.9
1841 Female, age 85, right hemisphere 6.8
1847 Female, age 91, left hemisphere 6.2
1794 Male, age 80, right hemisphere 5.9
Subiculum
nTPM: 6.2
2438 Female, age 94, left hemisphere 6.6
1901 Male, age 80, both hemispheres 6.4
2619 Male, age 74, both hemispheres 6.3
1977 Female, age 85, both hemispheres 6.2
2042 Male, age 76, both hemispheres 6.2
2729 Female, age 91, right hemisphere 5.5

HIPPOCAMPAL FORMATION - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

8.1
GTEx sample id Sample description nTPM
Brain - Hippocampus
Average nTPM: 8.1
Samples: 197

Max nTPM: 13.4
Min nTPM: 4.4
Std nTPM: 1.8
Median nTPM: 7.8
GTEX-ZF28-0011-R1a-SM-4WWD1 60-69 years, male 13.4
GTEX-NPJ8-0011-R1a-SM-33HCB 40-49 years, male 13.0
GTEX-YJ89-0011-R1a-SM-4RGLS 60-69 years, male 12.8
GTEX-1H4P4-0011-R1b-SM-CL54V 50-59 years, male 12.6
GTEX-14BIM-0011-R1a-SM-69LQI 60-69 years, female 12.4
GTEX-13FHP-0011-R1b-SM-5K7XL 50-59 years, male 11.6
GTEX-16NPV-0011-R1b-SM-7MGVZ 50-59 years, female 11.6
GTEX-1LG7Y-0011-R1a-SM-EYYWV 50-59 years, male 11.6
GTEX-145LU-0011-R1a-SM-5Q5CE 50-59 years, male 11.4
GTEX-1A32A-0011-R1a-SM-7P8SQ 50-59 years, female 11.2
GTEX-13NZA-0011-R1b-SM-5LUAF 60-69 years, male 11.1
GTEX-ZVZQ-0011-R1a-SM-57WBU 60-69 years, female 11.1
GTEX-OHPN-0011-R1A-SM-2I5GB 60-69 years, female 11.0
GTEX-1C6VQ-0011-R1a-SM-7P8Q2 50-59 years, male 11.0
GTEX-12WSD-0011-R1b-SM-5LZVY 60-69 years, female 10.8
GTEX-16GPK-0011-R1b-SM-7EWDH 60-69 years, male 10.8
GTEX-NPJ7-0011-R1a-SM-3GACT 60-69 years, female 10.8
GTEX-1F75W-0011-R1a-SM-ARU81 60-69 years, male 10.8
GTEX-14LLW-0011-R1a-SM-5ZZVD 70-79 years, female 10.7
GTEX-Y8DK-0011-R1A-SM-4RGLO 60-69 years, male 10.7
GTEX-11UD1-0011-R1b-SM-5BC7D 40-49 years, female 10.6
GTEX-11ZVC-0011-R1b-SM-5BC6M 50-59 years, female 10.6
GTEX-12ZZX-0011-R1a-SM-5EQ6B 40-49 years, female 10.6
GTEX-1J8Q2-0011-R1a-SM-D4P2D 60-69 years, male 10.6
GTEX-11ZTS-0011-R1a-SM-5BC71 60-69 years, female 10.5
GTEX-13CF2-0011-R1a-SM-5LZY1 60-69 years, male 10.4
GTEX-17F97-0011-R1b-SM-7IGM9 50-59 years, male 10.4
GTEX-QVUS-0011-R1A-SM-3GAD2 60-69 years, female 10.4
GTEX-18A6Q-0011-R1b-SM-731DI 60-69 years, male 10.3
GTEX-NL3H-0011-R1a-SM-48TDJ 60-69 years, male 10.3
GTEX-144GO-0011-R1a-SM-5PNWO 60-69 years, male 10.2
GTEX-1399T-0011-R1b-SM-5DUWN 60-69 years, male 9.9
GTEX-1C64N-0011-R1b-SM-7P8Q7 50-59 years, male 9.9
GTEX-QMR6-0011-R1A-SM-32PKW 50-59 years, male 9.8
GTEX-ZUA1-0011-R1a-SM-4YCE2 40-49 years, male 9.8
GTEX-1A3MX-0011-R1b-SM-7P8PH 60-69 years, male 9.8
GTEX-1GZHY-0011-R1a-SM-CE6RR 50-59 years, female 9.8
GTEX-14ASI-0011-R1b-SM-5S2TY 60-69 years, male 9.7
GTEX-14E7W-0011-R1b-SM-5YYAT 70-79 years, male 9.7
GTEX-X4EP-0011-R1A-SM-3P624 60-69 years, female 9.7
GTEX-11ONC-0011-R1a-SM-57WD4 60-69 years, male 9.6
GTEX-12WSM-0011-R1a-SM-5LZW6 60-69 years, male 9.6
GTEX-139T8-0011-R1a-SM-5HL75 60-69 years, male 9.6
GTEX-13NZ8-0011-R1b-SM-5KM3V 60-69 years, female 9.6
GTEX-S7SE-0011-R1A-SM-2XCDE 50-59 years, male 9.6
GTEX-X585-0011-R1B-SM-46MVE 50-59 years, male 9.6
GTEX-13NYS-0011-R1b-SM-5MR55 60-69 years, male 9.5
GTEX-144GL-0011-R1a-SM-5PNZ5 50-59 years, male 9.5
GTEX-1EWIQ-0011-R1a-SM-9OSX7 70-79 years, female 9.5
GTEX-13OVJ-0011-R1b-SM-5L3I6 50-59 years, female 9.2
GTEX-13SLW-0011-R1a-SM-5S2W7 70-79 years, male 9.2
GTEX-11GSP-0011-R1a-SM-9QEJ3 60-69 years, female 9.2
GTEX-1CB4J-0011-R1a-SM-9WG64 60-69 years, male 9.2
GTEX-1F6IF-0011-R1b-SM-9WG78 60-69 years, male 9.2
GTEX-QDT8-0011-R1A-SM-32PKS 30-39 years, female 9.1
GTEX-15UF6-0011-R1a-SM-9QEGH 70-79 years, female 9.1
GTEX-13N2G-0011-R1b-SM-5MR3G 60-69 years, male 9.0
GTEX-13OW8-0011-R1a-SM-5L3HI 60-69 years, male 9.0
GTEX-TSE9-0011-R1A-SM-3DB7E 60-69 years, female 9.0
GTEX-1B933-0011-R1b-SM-9QEGW 50-59 years, female 9.0
GTEX-11GSO-0011-R1b-SM-57WD3 60-69 years, male 8.9
GTEX-13FTY-0011-R1a-SM-5LZXE 40-49 years, female 8.8
GTEX-13PDP-0011-R1a-SM-5PNX5 60-69 years, male 8.7
GTEX-1HR98-0011-R1a-SM-ARZLQ 60-69 years, male 8.7
GTEX-1212Z-0011-R1b-SM-5BC72 60-69 years, male 8.6
GTEX-12WSH-0011-R1a-SM-5GU5V 50-59 years, male 8.6
GTEX-12WSE-0011-R1b-SM-5GU4V 20-29 years, male 8.5
GTEX-13NYB-0011-R1b-SM-5KM4F 40-49 years, male 8.5
GTEX-13QJC-0011-R1b-SM-5S2UU 60-69 years, female 8.5
GTEX-14PQA-0011-R1b-SM-6EU1G 50-59 years, female 8.5
GTEX-ZE7O-0011-R1a-SM-57WDM 50-59 years, female 8.5
GTEX-13O3Q-0011-R1b-SM-5KM3L 50-59 years, male 8.4
GTEX-PVOW-0011-R1A-SM-32PL6 40-49 years, male 8.4
GTEX-1C6VR-0011-R1a-SM-7MXUE 60-69 years, male 8.4
GTEX-13FXS-0011-R1a-SM-5K7U6 50-59 years, male 8.3
GTEX-14JIY-0011-R1a-SM-68713 60-69 years, male 8.3
GTEX-X4XX-0011-R1B-SM-3P622 60-69 years, male 8.3
GTEX-1HSMO-0011-R1a-SM-CM2SV 60-69 years, male 8.3
GTEX-183WM-0011-R1a-SM-718A8 70-79 years, female 8.2
GTEX-1A8G6-0011-R1a-SM-7P8PC 60-69 years, male 8.2
GTEX-1H23P-0011-R1a-SM-ACKVC 60-69 years, male 8.2
GTEX-1J1OQ-0011-R1a-SM-A9G1Z 40-49 years, female 8.2
GTEX-12WSF-0011-R1a-SM-5DUVI 70-79 years, male 8.1
GTEX-PWO3-0011-R1A-SM-2I5EW 60-69 years, female 8.1
GTEX-WVLH-0011-R1A-SM-4MVOK 50-59 years, male 8.1
GTEX-1ICLZ-0011-R1b-SM-A9SM3 60-69 years, male 8.1
GTEX-17EVP-0011-R1a-SM-7DHLA 40-49 years, male 8.0
GTEX-QVJO-0011-R1A-SM-2S1QI 60-69 years, female 8.0
GTEX-YFC4-0011-R1a-SM-4V6EH 40-49 years, female 8.0
GTEX-1B8SF-0011-R1b-SM-7P8Q8 60-69 years, male 8.0
GTEX-1H1DG-0011-R1b-SM-CKZP1 70-79 years, male 8.0
GTEX-13112-0011-R1b-SM-5HL7K 50-59 years, male 7.9
GTEX-132Q8-0011-R1a-SM-5EGLK 60-69 years, male 7.9
GTEX-14LZ3-0011-R1a-SM-69LP5 60-69 years, female 7.9
GTEX-15DCD-0011-R1b-SM-6LPIJ 70-79 years, female 7.9
GTEX-17MF6-0011-R1a-SM-72D6O 40-49 years, male 7.9
GTEX-1GTWX-0011-R1a-SM-CE6RL 60-69 years, male 7.9
GTEX-1I1GV-0011-R1a-SM-CL559 60-69 years, male 7.9
GTEX-T5JC-0011-R1A-SM-32PM6 20-29 years, male 7.8
GTEX-WZTO-0011-R1B-SM-3NMAR 40-49 years, male 7.8
GTEX-11GS4-0011-R1a-SM-DO129 60-69 years, male 7.8
GTEX-1GF9V-0011-R1a-SM-CKZNQ 60-69 years, male 7.8
GTEX-1H1CY-0011-R1a-SM-CKZOZ 60-69 years, female 7.8
GTEX-1LB8K-0011-R1b-SM-EZ6MV 50-59 years, male 7.8
GTEX-131YS-0011-R1a-SM-5DUXC 60-69 years, female 7.7
GTEX-13S7M-0011-R1b-SM-5PNZE 60-69 years, female 7.7
GTEX-R55E-0011-R1A-SM-2TC6N 20-29 years, male 7.7
GTEX-1AX9I-0011-R1b-SM-7RHG2 60-69 years, male 7.7
GTEX-13FHO-0011-R1b-SM-5KLZG 60-69 years, male 7.6
GTEX-ZAB4-0011-R1a-SM-4RGNO 40-49 years, male 7.6
GTEX-1CB4G-0011-R1b-SM-9QEHT 60-69 years, male 7.6
GTEX-13G51-0011-R1a-SM-5LZYR 60-69 years, male 7.5
GTEX-13OW7-0011-R1b-SM-5L3HF 50-59 years, male 7.5
GTEX-17EVQ-0011-R1a-SM-7189S 70-79 years, male 7.5
GTEX-1BAJH-0011-R1a-SM-7P8SV 70-79 years, male 7.5
GTEX-1IY9M-0011-R1a-SM-EXURZ 60-69 years, male 7.5
GTEX-RNOR-0011-R1A-SM-CNNP5 50-59 years, female 7.5
GTEX-13RTJ-0011-R1a-SM-5O9D9 60-69 years, male 7.4
GTEX-1B8L1-0011-R1a-SM-7P8SS 60-69 years, male 7.4
GTEX-1F6I4-0011-R1a-SM-9OSWU 60-69 years, male 7.4
GTEX-1H3VE-0011-R1a-SM-A9G1K 40-49 years, male 7.4
GTEX-1HBPI-0011-R1b-SM-A9SKF 50-59 years, male 7.4
GTEX-1I1HK-0011-R1b-SM-CM2T7 60-69 years, male 7.4
GTEX-1IKK5-0011-R1b-SM-CE6SQ 60-69 years, male 7.4
GTEX-131XH-0011-R1a-SM-5DUWA 50-59 years, male 7.3
GTEX-13OVL-0011-R1a-SM-5L3H5 50-59 years, male 7.3
GTEX-UTHO-0011-R1A-SM-3GIJO 60-69 years, male 7.3
GTEX-XMD1-0011-R1A-SM-4AT4C 60-69 years, male 7.3
GTEX-14PJM-0011-R1a-SM-CNPO3 50-59 years, female 7.3
GTEX-145LS-0011-R1b-SM-5PNUP 60-69 years, female 7.2
GTEX-14ABY-0011-R1a-SM-6EU2W 50-59 years, male 7.2
GTEX-14PN4-0011-R1b-SM-69LP8 50-59 years, male 7.2
GTEX-1F75A-0011-R1b-SM-CE6RA 50-59 years, male 7.2
GTEX-1GF9W-0011-R1a-SM-9QEIQ 60-69 years, male 7.2
GTEX-14PJO-0011-R1b-SM-6AJAK 60-69 years, male 7.1
GTEX-WWYW-0011-R1A-SM-3TW8G 50-59 years, female 7.1
GTEX-13X6I-0011-R1b-SM-5PNZC 60-69 years, male 7.0
GTEX-16Z82-0011-R1b-SM-7EPHZ 60-69 years, male 7.0
GTEX-1EX96-0011-R1a-SM-CE6R5 50-59 years, male 7.0
GTEX-139TT-0011-R1a-SM-5LZVD 60-69 years, male 6.9
GTEX-13OW5-0011-R1b-SM-5L3GE 60-69 years, male 6.9
GTEX-P44G-0011-R1A-SM-2I3FE 30-39 years, male 6.9
GTEX-1CAV2-0011-R1a-SM-ARZML 40-49 years, female 6.9
GTEX-1EKGG-0011-R1b-SM-9QEI1 60-69 years, male 6.9
GTEX-145MH-0011-R1b-SM-5PNWY 50-59 years, male 6.8
GTEX-1H3O1-0011-R1b-SM-CL554 60-69 years, male 6.8
GTEX-N7MT-0011-R1a-SM-CNPO1 60-69 years, female 6.8
GTEX-ZDXO-0011-R1a-SM-4WKF4 60-69 years, male 6.7
GTEX-11EI6-0011-R1a-SM-DO93L 60-69 years, male 6.7
GTEX-1H1ZS-0011-R1b-SM-A9G1E 70-79 years, male 6.7
GTEX-1IDJH-0011-R1b-SM-ARU6U 70-79 years, male 6.7
GTEX-1IOXB-0011-R1a-SM-D4P27 50-59 years, male 6.7
GTEX-13QIC-0011-R1a-SM-5O9CJ 60-69 years, female 6.6
GTEX-14E6D-0011-R1b-SM-5YYAW 50-59 years, male 6.6
GTEX-T6MN-0011-R1A-SM-32QOY 50-59 years, male 6.6
GTEX-1GMR8-0011-R1b-SM-CJI2O 50-59 years, female 6.6
GTEX-13JVG-0011-R1a-SM-5KM32 60-69 years, male 6.5
GTEX-1HSKV-0011-R1b-SM-CMKH7 60-69 years, male 6.5
GTEX-13N1W-0011-R1b-SM-5MR4T 70-79 years, male 6.4
GTEX-17HHY-0011-R1a-SM-7189V 50-59 years, male 6.4
GTEX-11DXW-0011-R1a-SM-DNZZD 40-49 years, male 6.4
GTEX-1EH9U-0011-R1b-SM-CJI2B 60-69 years, male 6.4
GTEX-13FLW-0011-R1b-SM-5LZX2 50-59 years, male 6.3
GTEX-14C5O-0011-R1b-SM-6AJBW 60-69 years, male 6.3
GTEX-1E2YA-0011-R1b-SM-CJI29 50-59 years, male 6.3
GTEX-1GN2E-0011-R1b-SM-CE6RJ 60-69 years, male 6.3
GTEX-1H3NZ-0011-R1a-SM-CKZP5 60-69 years, male 6.3
GTEX-13OW6-0011-R1a-SM-5L3HQ 50-59 years, male 6.2
GTEX-15ER7-0011-R1b-SM-7KUE1 20-29 years, female 6.2
GTEX-1HGF4-0011-R1a-SM-CJI3S 60-69 years, male 6.2
GTEX-15CHQ-0011-R1a-SM-COH27 60-69 years, male 6.1
GTEX-17HII-0011-R1b-SM-7MGVW 50-59 years, male 6.0
GTEX-1HT8W-0011-R1b-SM-CJI3V 30-39 years, male 6.0
GTEX-13JUV-0011-R1a-SM-5LZY4 40-49 years, female 5.9
GTEX-1I1GS-0011-R1a-SM-CJI43 60-69 years, male 5.9
GTEX-1313W-0011-R1b-SM-5EQ4A 50-59 years, female 5.8
GTEX-P44H-0011-R1A-SM-3NM8J 40-49 years, male 5.8
GTEX-11WQC-0011-R1b-SM-DO932 60-69 years, male 5.8
GTEX-1EMGI-0011-R1b-SM-9OSWZ 60-69 years, male 5.8
GTEX-17JCI-0011-R1b-SM-718A3 60-69 years, female 5.7
GTEX-16YQH-0011-R1a-SM-7LT8R 30-39 years, male 5.5
GTEX-N7MS-0011-R1a-SM-2HMJG 60-69 years, male 5.5
GTEX-1I1GQ-0011-R1a-SM-CY8GG 50-59 years, male 5.5
GTEX-17HG3-0011-R1a-SM-7LG6H 30-39 years, female 5.4
GTEX-1B996-0011-R1b-SM-7P8PO 60-69 years, male 5.4
GTEX-1GN73-0011-R1a-SM-CKZNT 60-69 years, male 5.4
GTEX-13O3O-0011-R1b-SM-5KM2K 60-69 years, female 5.3
GTEX-Q2AG-0011-R1A-SM-2HMJI 40-49 years, female 5.3
GTEX-1E1VI-0011-R1a-SM-ARZMM 50-59 years, male 5.3
GTEX-11TUW-0011-R1a-SM-DO92S 60-69 years, male 5.1
GTEX-13RTL-0011-R1a-SM-5PNZ8 40-49 years, male 5.0
GTEX-1GN1U-0011-R1a-SM-CJI25 50-59 years, female 5.0
GTEX-16XZZ-0011-R1a-SM-7LTAH 60-69 years, male 4.9
GTEX-WHSE-0011-R1A-SM-3P5ZK 20-29 years, male 4.9
GTEX-1F48J-0011-R1a-SM-9QEIC 50-59 years, female 4.8
GTEX-WL46-0011-R1A-SM-3LK6M 50-59 years, male 4.4
GTEX-1GZ2Q-0011-R1a-SM-CJI2Y 40-49 years, male 4.4
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HIPPOCAMPAL FORMATION - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

14.5
FANTOM5 sample id Sample description Scaled Tags Per Million
Hippocampus
Scaled Tags Per Million: 14.5
FF:10169-103B7 60 years, female 16.6
FF:10153-102I9 76 years, female 12.5

HIPPOCAMPAL FORMATION - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

8.4
Pig sample Sample description nTPM
Subiculum
nTPM: 6.8
Samples: 4

Max nTPM: 8.7
Min nTPM: 5.4
Sample A Female 8.7
Sample B Female 6.5
Sample C Male 5.4
Sample D Male 6.4
Dorsal hippocampus
nTPM: 7.7
Samples: 4

Max nTPM: 9.8
Min nTPM: 6.4
Sample A Female 9.8
Sample B Female 6.4
Sample C Male 7.2
Sample D Male 7.2
Entorhinal cortex
nTPM: 8.4
Samples: 4

Max nTPM: 8.9
Min nTPM: 7.6
Sample A Female 8.4
Sample B Female 8.8
Sample C Male 7.6
Sample D Male 8.9
Ventral hippocampus
nTPM: 7.1
Samples: 4

Max nTPM: 7.8
Min nTPM: 6.5
Sample A Female 7.8
Sample B Female 6.5
Sample C Male 6.7
Sample D Male 7.4

HIPPOCAMPAL FORMATION - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

9.8
Mouse sample Sample description nTPM
Entorhinal cortex
nTPM: 8.6
Samples: 4

Max nTPM: 9.7
Min nTPM: 7.5
Sample A Male 7.9
Sample B Male 9.4
Sample C Female 9.7
Sample D Female 7.5
Hippocampal formation
nTPM: 9.8
Samples: 4

Max nTPM: 10.5
Min nTPM: 9.0
Sample A Male 10.4
Sample B Male 9.3
Sample C Female 10.5
Sample D Female 9.0

HIPPOCAMPAL FORMATION - Allen Mouse ISHi

In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.

Max subtype Expression energyi

Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.

0.3
Allen experiment id Experiment description Expression energy
Hippocampal formation
Expression energy: 0.3
68077014 Antisense, RP_040929_01_C07, Mouse strain C57BL/6J (56 days, male) 0.3

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