MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:223.6 nTPM
HPA Brain:224.8 nTPM
GTEx:223.6 nTPM
FANTOM5:84.9 Scaled Tags Per Million
Pig:84.1 nTPM
Mouse:19.9 nTPM
Allen mouse:6.6 Expression energy
BRAIN - SINGLE CELL RNA EXPRESSION

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 224.8
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 143.6
2828 Female, age 72, unknown 265.2
2586 Male, age 75, left hemisphere 259.3
1827 Male, age 72, unknown 162.4
2666 Male, age 74, left hemisphere 137.2
1833 Male, age 53, unknown 129.1
1870 Female, age 42, unknown 114.3
1830 Male, age 51, unknown 107.3
2019 Male, age 18, unknown 97.2
2219 Male, age 76, both hemispheres 84.6
2411 Female, age 72, unknown 79.0
Dorsal raphe nucleus
nTPM: 109.5
2016 Female, age 72, unknown 151.1
1828 Male, age 53, unknown 139.5
2298 Female, age 72, unknown 94.2
2047 Male, age 72, unknown 83.9
2750 Male, age 76, both hemispheres 79.0
Inferior colliculus
nTPM: 167.1
2849 Male, age 72, unknown 211.0
1848 Female, age 42, unknown 190.7
1890 Male, age 53, unknown 151.1
2097 Female, age 72, unknown 115.7
Median raphe nucleus
nTPM: 76.3
2220 Male, age 76, midline 76.3
Periaquaductal grey, anterior
nTPM: 172.7
1795 Male, age 51, unknown 201.1
2502 Female, age 75, unknown 188.5
1947 Male, age 18, unknown 128.4
Periaquaductal grey, dorsal
nTPM: 224.8
2850 Male, age 76, both hemispheres 263.3
1831 Male, age 72, unknown 259.8
1840 Male, age 53, unknown 238.1
2464 Female, age 72, unknown 137.9
Periaquaductal grey, lateral
nTPM: 196.5
2053 Male, age 18, unknown 229.4
2140 Male, age 76, both hemispheres 227.6
2272 Male, age 74, both hemispheres 132.3
Pretectal area
nTPM: 204.6
2667 Female, age 75, unknown 268.0
2273 Male, age 74, both hemispheres 263.7
1816 Male, age 51, unknown 237.9
1944 Female, age 72, unknown 219.2
2407 Male, age 75, both hemispheres 219.1
2316 Male, age 76, right hemisphere 215.0
1815 Male, age 53, unknown 214.7
1817 Female, age 42, unknown 200.6
2825 Male, age 18, unknown 168.0
2007 Male, age 72, unknown 127.4
2224 Female, age 72, unknown 117.6
Red nucleus
nTPM: 129.7
2503 Female, age 72, unknown 160.4
2588 Male, age 74, left hemisphere 146.5
2823 Male, age 76, right hemisphere 139.8
2769 Male, age 72, unknown 137.9
2227 Male, age 72, unknown 135.3
2725 Female, age 75, unknown 127.2
2584 Male, age 75, left hemisphere 124.2
1821 Female, age 72, unknown 123.6
1904 Male, age 53, unknown 122.4
1954 Female, age 42, unknown 115.7
1865 Male, age 51, unknown 113.1
2785 Male, age 18, unknown 109.9
Substantia nigra
nTPM: 158.0
2699 Male, age 18, unknown 306.3
1889 Female, age 72, unknown 180.9
1851 Male, age 51, unknown 174.6
1916 Female, age 42, unknown 169.0
2583 Male, age 75, right hemisphere 149.5
2409 Female, age 72, unknown 134.8
2665 Male, age 74, both hemispheres 134.5
2241 Male, age 72, unknown 118.5
2590 Female, age 75, unknown 117.8
1941 Male, age 53, unknown 94.2
Superior colliculus
nTPM: 221.4
2664 Male, age 75, both hemispheres 396.3
1995 Male, age 72, unknown 248.1
1796 Male, age 53, unknown 243.9
2087 Female, age 72, unknown 226.6
2261 Male, age 18, unknown 215.2
1839 Male, age 51, unknown 203.9
2668 Female, age 75, unknown 183.4
2587 Male, age 74, left hemisphere 178.8
1913 Female, age 42, unknown 174.7
1895 Male, age 76, right hemisphere 143.1
Ventral tegmental area
nTPM: 116.5
1915 Female, age 42, unknown 143.6
2021 Male, age 53, unknown 119.8
2223 Female, age 72, unknown 115.1
2410 Female, age 72, unknown 110.3
2218 Male, age 76, both hemispheres 107.4
1942 Male, age 51, unknown 102.5

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 223.6
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 223.6
Samples: 183

Max nTPM: 1629.4
Min nTPM: 16.6
Std nTPM: 205.0
Median nTPM: 178.3
GTEX-1RLM8-0011-R2a-SM-EZ6N4 50-59 years, male 1629.4
GTEX-WL46-0011-R2A-SM-3LK6O 50-59 years, male 1390.0
GTEX-1MJK2-0011-R2b-SM-EXUS5 50-59 years, male 1255.2
GTEX-1O9I2-0011-R2b-SM-F3K53 50-59 years, male 965.7
GTEX-1117F-0011-R2b-SM-GI4VL 60-69 years, female 906.0
GTEX-13OVJ-0011-R2b-SM-5L3GP 50-59 years, female 595.8
GTEX-1NV5F-0011-R2a-SM-G8LME 60-69 years, female 537.9
GTEX-13SLW-0011-R2b-SM-5O9C6 70-79 years, male 522.2
GTEX-15EO6-0011-R2a-SM-6M46R 50-59 years, male 519.3
GTEX-1H1ZS-0011-R2b-SM-CL54Q 70-79 years, male 472.7
GTEX-1GMR8-0011-R2a-SM-CE6RD 50-59 years, female 438.0
Show allShow less

MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 84.9
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 84.9
FF:10158-103A5 76 years, female 84.9

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 84.1
Pig sample Sample description nTPM
Substantia nigra
nTPM: 47.8
Samples: 4

Max nTPM: 65.7
Min nTPM: 31.6
Sample A Female 31.6
Sample B Female 65.7
Sample C Male 42.5
Sample D Male 51.4
Midbrain
nTPM: 36.7
Samples: 4

Max nTPM: 49.9
Min nTPM: 29.1
Sample A Female 37.9
Sample B Female 29.1
Sample C Male 49.9
Sample D Male 29.7
Periaqueductal gray
nTPM: 68.8
Samples: 3

Max nTPM: 86.0
Min nTPM: 39.5
Sample B Female 39.5
Sample C Male 81.0
Sample D Male 86.0
Superior colliculi
nTPM: 84.1
Samples: 4

Max nTPM: 154.7
Min nTPM: 53.1
Sample A Female 73.7
Sample B Female 154.7
Sample C Male 55.0
Sample D Male 53.1

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 19.9
Mouse sample Sample description nTPM
Midbrain
nTPM: 19.9
Samples: 4

Max nTPM: 23.5
Min nTPM: 16.8
Sample A Male 18.8
Sample B Male 20.5
Sample C Female 16.8
Sample D Female 23.5

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 6.6
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 6.6
576432 Antisense, RP_040826_01_H06, Mouse strain C57BL/6J (56 days, male) 10.9
73732146 Antisense, RP_051121_04_A04, Mouse strain C57BL/6J (56 days, male) 2.3

Contact

The Project

The Human Protein Atlas

KAW logo The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.

contact@proteinatlas.org
GCBR logo Elixir core logo SciLifeLab logo Uppsala university logo KI logo KTH logo