MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:23.4 nTPM
HPA Brain:13.7 nTPM
GTEx:23.4 nTPM
FANTOM5:33.6 Scaled Tags Per Million
Pig:17.1 nTPM
Mouse:13.9 nTPM
Allen mouse:3.4 Expression energy
BRAIN - SINGLE CELL RNA EXPRESSION

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 13.7
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 13.1
2586 Male, age 75, left hemisphere 18.6
2666 Male, age 74, left hemisphere 18.1
2219 Male, age 76, both hemispheres 13.9
1827 Male, age 72, unknown 13.7
2828 Female, age 72, unknown 13.3
1833 Male, age 53, unknown 12.8
2411 Female, age 72, unknown 10.9
1870 Female, age 42, unknown 10.7
1830 Male, age 51, unknown 10.3
2019 Male, age 18, unknown 8.6
Dorsal raphe nucleus
nTPM: 12.6
2047 Male, age 72, unknown 14.3
2750 Male, age 76, both hemispheres 13.5
1828 Male, age 53, unknown 13.1
2298 Female, age 72, unknown 11.7
2016 Female, age 72, unknown 10.8
Inferior colliculus
nTPM: 12.5
2849 Male, age 72, unknown 14.7
1890 Male, age 53, unknown 12.9
1848 Female, age 42, unknown 12.1
2097 Female, age 72, unknown 10.2
Median raphe nucleus
nTPM: 13.2
2220 Male, age 76, midline 13.2
Periaquaductal grey, anterior
nTPM: 13.3
1795 Male, age 51, unknown 14.6
1947 Male, age 18, unknown 13.9
2502 Female, age 75, unknown 11.4
Periaquaductal grey, dorsal
nTPM: 12.5
1840 Male, age 53, unknown 14.1
2850 Male, age 76, both hemispheres 13.1
2464 Female, age 72, unknown 12.2
1831 Male, age 72, unknown 10.8
Periaquaductal grey, lateral
nTPM: 11.3
2140 Male, age 76, both hemispheres 12.6
2053 Male, age 18, unknown 11.1
2272 Male, age 74, both hemispheres 10.3
Pretectal area
nTPM: 11.7
2825 Male, age 18, unknown 14.7
2224 Female, age 72, unknown 13.2
2667 Female, age 75, unknown 13.2
1816 Male, age 51, unknown 12.6
1944 Female, age 72, unknown 12.5
2407 Male, age 75, both hemispheres 11.9
2007 Male, age 72, unknown 11.5
1817 Female, age 42, unknown 10.9
1815 Male, age 53, unknown 10.3
2316 Male, age 76, right hemisphere 9.4
2273 Male, age 74, both hemispheres 8.5
Red nucleus
nTPM: 11.8
2588 Male, age 74, left hemisphere 14.2
2823 Male, age 76, right hemisphere 13.5
2725 Female, age 75, unknown 12.9
2584 Male, age 75, left hemisphere 12.7
2227 Male, age 72, unknown 12.4
2769 Male, age 72, unknown 12.4
1865 Male, age 51, unknown 11.9
1954 Female, age 42, unknown 11.1
1904 Male, age 53, unknown 10.8
2503 Female, age 72, unknown 10.5
1821 Female, age 72, unknown 9.8
2785 Male, age 18, unknown 9.6
Substantia nigra
nTPM: 13.7
2699 Male, age 18, unknown 18.3
1916 Female, age 42, unknown 17.0
2665 Male, age 74, both hemispheres 14.5
1851 Male, age 51, unknown 14.3
1889 Female, age 72, unknown 13.4
2241 Male, age 72, unknown 13.3
1941 Male, age 53, unknown 12.8
2583 Male, age 75, right hemisphere 12.8
2590 Female, age 75, unknown 10.9
2409 Female, age 72, unknown 10.0
Superior colliculus
nTPM: 12.2
2664 Male, age 75, both hemispheres 14.0
2668 Female, age 75, unknown 14.0
1796 Male, age 53, unknown 13.6
1895 Male, age 76, right hemisphere 13.6
1839 Male, age 51, unknown 12.3
2261 Male, age 18, unknown 12.3
2087 Female, age 72, unknown 12.0
2587 Male, age 74, left hemisphere 12.0
1913 Female, age 42, unknown 9.6
1995 Male, age 72, unknown 8.8
Ventral tegmental area
nTPM: 12.6
1915 Female, age 42, unknown 16.4
2218 Male, age 76, both hemispheres 13.3
1942 Male, age 51, unknown 11.9
2021 Male, age 53, unknown 11.7
2410 Female, age 72, unknown 11.7
2223 Female, age 72, unknown 10.8

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 23.4
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 23.4
Samples: 183

Max nTPM: 48.5
Min nTPM: 12.8
Std nTPM: 6.0
Median nTPM: 23.0
GTEX-1LKK1-0011-R2b-SM-G8OLT 50-59 years, female 48.5
GTEX-12WSD-0011-R2a-SM-5LZWB 60-69 years, female 45.4
GTEX-1I19N-0011-R2b-SM-GPRYG 70-79 years, male 42.4
GTEX-1HBPH-0011-R2a-SM-GQ1DS 40-49 years, female 38.9
GTEX-1IDJH-0011-R2a-SM-GPI9D 70-79 years, male 38.0
GTEX-1KD4Q-0011-R2a-SM-F649I 40-49 years, male 37.4
GTEX-15DYW-0011-R2b-SM-7KUKY 60-69 years, female 35.2
GTEX-1J1OQ-0011-R2b-SM-ARU88 40-49 years, female 34.3
GTEX-13OW8-0011-R2a-SM-5L3G2 60-69 years, male 34.1
GTEX-1NV5F-0011-R2a-SM-G8LME 60-69 years, female 33.5
GTEX-11NUK-0011-R2a-SM-GINAO 50-59 years, male 33.4
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 33.6
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 33.6
FF:10158-103A5 76 years, female 33.6

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 17.1
Pig sample Sample description nTPM
Substantia nigra
nTPM: 16.8
Samples: 4

Max nTPM: 22.4
Min nTPM: 11.4
Sample A Female 11.4
Sample B Female 17.2
Sample C Male 22.4
Sample D Male 16.2
Midbrain
nTPM: 15.2
Samples: 4

Max nTPM: 17.9
Min nTPM: 10.1
Sample A Female 10.1
Sample B Female 15.6
Sample C Male 17.9
Sample D Male 17.1
Periaqueductal gray
nTPM: 17.1
Samples: 3

Max nTPM: 19.4
Min nTPM: 15.8
Sample B Female 15.8
Sample C Male 19.4
Sample D Male 16.2
Superior colliculi
nTPM: 14.7
Samples: 4

Max nTPM: 18.6
Min nTPM: 9.6
Sample A Female 9.6
Sample B Female 16.2
Sample C Male 14.5
Sample D Male 18.6

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 13.9
Mouse sample Sample description nTPM
Midbrain
nTPM: 13.9
Samples: 4

Max nTPM: 15.3
Min nTPM: 12.5
Sample A Male 15.3
Sample B Male 12.9
Sample C Female 12.5
Sample D Female 14.8

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 3.4
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 3.4
70430852 Antisense, RP_050614_02_B12, Mouse strain C57BL/6J (56 days, male) 3.4

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