MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:17.9 nTPM
HPA Brain:46.3 nTPM
GTEx:17.9 nTPM
FANTOM5:77.2 Scaled Tags Per Million
Pig:39.0 nTPM
BRAIN - SINGLE CELL RNA EXPRESSION

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 46.3
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 36.1
2411 Female, age 72, unknown 38.5
2019 Male, age 18, unknown 38.2
1833 Male, age 53, unknown 37.9
2666 Male, age 74, left hemisphere 37.1
1827 Male, age 72, unknown 36.8
2828 Female, age 72, unknown 35.9
1830 Male, age 51, unknown 35.6
2219 Male, age 76, both hemispheres 35.4
1870 Female, age 42, unknown 34.8
2586 Male, age 75, left hemisphere 30.4
Dorsal raphe nucleus
nTPM: 37.5
2750 Male, age 76, both hemispheres 42.5
2047 Male, age 72, unknown 38.6
1828 Male, age 53, unknown 37.8
2298 Female, age 72, unknown 36.2
2016 Female, age 72, unknown 32.3
Inferior colliculus
nTPM: 33.4
2097 Female, age 72, unknown 35.1
1890 Male, age 53, unknown 34.5
1848 Female, age 42, unknown 32.3
2849 Male, age 72, unknown 31.6
Median raphe nucleus
nTPM: 46.3
2220 Male, age 76, midline 46.3
Periaquaductal grey, anterior
nTPM: 38.3
1947 Male, age 18, unknown 41.7
2502 Female, age 75, unknown 41.5
1795 Male, age 51, unknown 31.8
Periaquaductal grey, dorsal
nTPM: 34.5
2850 Male, age 76, both hemispheres 37.9
2464 Female, age 72, unknown 35.9
1840 Male, age 53, unknown 32.1
1831 Male, age 72, unknown 32.0
Periaquaductal grey, lateral
nTPM: 33.7
2140 Male, age 76, both hemispheres 36.4
2053 Male, age 18, unknown 32.7
2272 Male, age 74, both hemispheres 32.1
Pretectal area
nTPM: 37.0
1816 Male, age 51, unknown 42.0
1817 Female, age 42, unknown 40.0
2007 Male, age 72, unknown 39.6
2316 Male, age 76, right hemisphere 37.8
1815 Male, age 53, unknown 37.3
2667 Female, age 75, unknown 37.0
1944 Female, age 72, unknown 35.9
2224 Female, age 72, unknown 35.8
2825 Male, age 18, unknown 34.5
2407 Male, age 75, both hemispheres 34.2
2273 Male, age 74, both hemispheres 32.7
Red nucleus
nTPM: 36.6
2725 Female, age 75, unknown 40.6
2503 Female, age 72, unknown 39.3
2823 Male, age 76, right hemisphere 38.7
1821 Female, age 72, unknown 38.4
2588 Male, age 74, left hemisphere 37.9
1865 Male, age 51, unknown 37.7
1904 Male, age 53, unknown 36.2
1954 Female, age 42, unknown 34.7
2584 Male, age 75, left hemisphere 34.2
2785 Male, age 18, unknown 34.0
2227 Male, age 72, unknown 33.9
2769 Male, age 72, unknown 33.1
Substantia nigra
nTPM: 38.7
2241 Male, age 72, unknown 54.5
1916 Female, age 42, unknown 47.1
1941 Male, age 53, unknown 40.0
1851 Male, age 51, unknown 39.0
1889 Female, age 72, unknown 38.3
2699 Male, age 18, unknown 37.3
2409 Female, age 72, unknown 34.8
2665 Male, age 74, both hemispheres 34.2
2590 Female, age 75, unknown 31.3
2583 Male, age 75, right hemisphere 30.3
Superior colliculus
nTPM: 34.6
1895 Male, age 76, right hemisphere 37.9
2087 Female, age 72, unknown 37.2
1839 Male, age 51, unknown 36.3
2587 Male, age 74, left hemisphere 36.3
2261 Male, age 18, unknown 35.7
2668 Female, age 75, unknown 34.4
1796 Male, age 53, unknown 34.2
1913 Female, age 42, unknown 33.1
2664 Male, age 75, both hemispheres 32.1
1995 Male, age 72, unknown 28.5
Ventral tegmental area
nTPM: 38.4
2218 Male, age 76, both hemispheres 43.4
2410 Female, age 72, unknown 39.7
1915 Female, age 42, unknown 38.9
1942 Male, age 51, unknown 36.6
2223 Female, age 72, unknown 36.1
2021 Male, age 53, unknown 35.5

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 17.9
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 17.9
Samples: 183

Max nTPM: 31.8
Min nTPM: 10.6
Std nTPM: 3.8
Median nTPM: 17.5
GTEX-117XS-0011-R2b-SM-GI4VT 60-69 years, male 31.8
GTEX-1313W-0011-R2a-SM-5EGLF 50-59 years, female 29.8
GTEX-13O3Q-0011-R2b-SM-5KM3K 50-59 years, male 28.5
GTEX-1EMGI-0011-R2b-SM-9OSVS 60-69 years, male 28.1
GTEX-1B8L1-0011-R2a-SM-9OSVL 60-69 years, male 27.9
GTEX-11NUK-0011-R2a-SM-GINAO 50-59 years, male 27.5
GTEX-15ER7-0011-R2a-SM-6M46O 20-29 years, female 27.5
GTEX-12WSD-0011-R2a-SM-5LZWB 60-69 years, female 27.1
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 26.8
GTEX-ZDXO-0011-R2b-SM-4WKFG 60-69 years, male 26.2
GTEX-1HT8W-0011-R2a-SM-CMKH9 30-39 years, male 26.0
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 77.2
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 77.2
FF:10158-103A5 76 years, female 77.2

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 39.0
Pig sample Sample description nTPM
Substantia nigra
nTPM: 37.2
Samples: 4

Max nTPM: 47.1
Min nTPM: 31.6
Sample A Female 47.1
Sample B Female 31.6
Sample C Male 36.6
Sample D Male 33.3
Midbrain
nTPM: 38.6
Samples: 4

Max nTPM: 46.0
Min nTPM: 29.6
Sample A Female 46.0
Sample B Female 45.6
Sample C Male 29.6
Sample D Male 33.1
Periaqueductal gray
nTPM: 29.3
Samples: 3

Max nTPM: 32.8
Min nTPM: 25.4
Sample B Female 32.8
Sample C Male 29.8
Sample D Male 25.4
Superior colliculi
nTPM: 39.0
Samples: 4

Max nTPM: 50.3
Min nTPM: 31.5
Sample A Female 50.3
Sample B Female 31.5
Sample C Male 36.9
Sample D Male 37.1

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