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BETA
  • SUMMARY

  • TISSUE

  • BRAIN

  • SINGLE CELL

  • IMMUNE

  • SUBCELL

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  • RAN
EVOLUTIONARY SUBSTANTIA NIGRA Show tissue menu
BRAIN74 EYE4 ENDOCRINE TISSUES5 RESPIRATORY SYSTEM6 PROXIMAL DIGESTIVE TRACT5 GASTROINTESTINAL TRACT11 LIVER & GALLBLADDER4 PANCREAS1 KIDNEY & URINARY BLADDER4 MALE REPRODUCTIVE SYSTEM11 BREAST & FEMALE REPRODUCTIVE SYSTEM10 MUSCLE & VASCULAR TISSUE12 CONNECTIVE & SOFT TISSUE15 SKIN4 BONE MARROW & LYMPHOID TISSUES7
Select an organ to show its tissues
AMYGDALA ANGULAR GYRUS ANNECTANT GYRUS ANTERIOR CINGULATE GYRUS BASAL GANGLIA CAUDATE NUCLEUS CAUDATE PUTAMEN CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS CINGULATE CORTEX CLAUSTRUM CORPUS CALLOSUM CUNEUS DORSAL HIPPOCAMPUS DORSAL ROOT GANGLION DORSAL SPINAL CORD ENTORHINAL CORTEX FRONTAL CORTEX
FUSIFORM GYRUS GENICULATE NUCLEUS GLOBUS PALLIDUS GYRUS RECTUS HABENULA HIPPOCAMPAL FORMATION HYPOTHALAMUS HYPOTHALAMUS, ANTERIOR HYPOTHALAMUS, POSTERIOR INFERIOR FRONTAL GYRUS INFERIOR OCCIPITAL GYRUS INFERIOR TEMPORAL GYRUS INSULAR CORTEX LATERAL THALAMIC NUCLEI MEDULLA OBLONGATA MIDBRAIN MIDDLE FRONTAL GYRUS MIDDLE TEMPORAL GYRUS MOTOR AND PREFRONTAL CORTEX
MOTOR CORTEX OCCIPITAL CORTEX OCCIPITAL GYRUS OLFACTORY BULB ORBITAL GYRUS PERIAQUEDUCTAL GRAY PONS POSTCENTRAL GYRUS POSTERIOR CINGULATE CORTEX POSTERIOR PARAHIPPOCAMPAL GYRUS POSTERIOR THALAMUS PRECENTRAL GYRUS PREFRONTAL CORTEX PREOPTIC AREA PUTAMEN RETROSPLENIAL AND CINGULATE CORTEX RETROSPLENIAL CORTEX SEPTAL AREA SEPTUM
SOMATOSENSORY CORTEX SPINAL CORD SUBICULUM SUBSTANTIA NIGRA SUPERIOR COLLICULI SUPERIOR FRONTAL GYRUS SUPERIOR PARIETAL LOBULE SUPERIOR TEMPORAL GYRUS SUPRAMARGINAL GYRUS TEMPORAL CORTEX THALAMUS VENTRAL FOREBRAIN VENTRAL HIPPOCAMPUS VENTRAL PALLIDUM VENTRAL SPINAL CORD VISUAL CORTEX WHITE MATTER
CORNEA HARDERIAN GLAND LENS RETINA
ADRENAL GLAND PARATHYROID GLAND PINEAL GLAND PITUITARY GLAND THYROID GLAND
BRONCHUS LARYNX LUNG NASOPHARYNX OLFACTORY EPITHELIUM TRACHEA
ESOPHAGUS LIP ORAL MUCOSA SALIVARY GLAND TONGUE
CECUM COLON DUODENUM ILEUM JEJUNUM RECTUM SMALL INTESTINE STOMACH STOMACH (LOWER) STOMACH (MIDDLE) STOMACH (UPPER)
GALLBLADDER LIVER LIVER (LOBE 1) LIVER (LOBE 4)
PANCREAS
KIDNEY KIDNEY (CORTEX) KIDNEY (MEDULLA) URINARY BLADDER
BULBOURETHRAL GLAND DUCTUS DEFERENS EPIDIDYMIS MALE PREPUTIAL GLAND PENIS PROSTATE PROSTATE (ANTERIOR) PROSTATE (VENTRAL) SEMINAL VESICLE TESTIS URETHRAL GLAND
BREAST CERVIX CLITORIS ENDOMETRIUM FALLOPIAN TUBE FEMALE PREPUTIAL GLAND OVARY PLACENTA UTERUS VAGINA
AORTA BLOOD VESSEL DIAPHRAGM HEART ATRIUM HEART MUSCLE HEART VALVE HEART WALL PERIPHERAL VASCULATURE SKELETAL MUSCLE SMOOTH MUSCLE SMOOTH MUSCLE (INTESTINE) SMOOTH MUSCLE (UTERUS)
ABDOMINAL ADIPOSE TISSUE ADIPOSE TISSUE BROWN ADIPOSE TISSUE DURA MATER EAR CANAL EAR CARTILAGE JOINT CARTILAGE MENINGES ORBITAL ADIPOSE TISSUE PERICARDIUM PERITONEUM PLEURA SUBCUTANEOUS ADIPOSE TISSUE SYNOVIAL TISSUE VAGUS NERVE
EYE LID SKIN SKIN (BACK) SKIN (GROIN)
APPENDIX BLOOD, PBMC BONE MARROW LYMPH NODE SPLEEN THYMUS TONSIL
HumanMacaqueMouseRatPig
Protein evolution
Brain
Evolutionary methods
SUBSTANTIA NIGRA - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.

Scroll down to view mRNA expression data in more detail.

HPA Brain:198.4 nTPM
GTEx:199.1 nTPM
FANTOM5:140.9 Scaled Tags Per Million
Macaque:98.6 nTPM
Pig:93.2 nTPM
BRAIN - SINGLE CELL RNA EXPRESSION
Explore single cell type data

SUBSTANTIA NIGRA - Annotated protein expression
Pending normal tissue analysis

SUBSTANTIA NIGRA - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

198.4
Sample id Sample description nTPM
Substantia nigra
nTPM: 198.4
1916 Female, age 42, unknown 274.4
1851 Male, age 51, unknown 227.8
1889 Female, age 72, unknown 216.9
1941 Male, age 53, unknown 212.1
2699 Male, age 18, unknown 190.1
2241 Male, age 72, unknown 189.8
2665 Male, age 74, both hemispheres 186.2
2409 Female, age 72, unknown 175.5
2590 Female, age 75, unknown 173.5
2583 Male, age 75, right hemisphere 138.2

SUBSTANTIA NIGRA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

199.1
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 199.1
Samples: 183

Max nTPM: 359.5
Min nTPM: 105.3
Std nTPM: 50.9
Median nTPM: 189.6
GTEX-1313W-0011-R2a-SM-5EGLF 50-59 years, female 359.5
GTEX-117XS-0011-R2b-SM-GI4VT 60-69 years, male 352.1
GTEX-1EMGI-0011-R2b-SM-9OSVS 60-69 years, male 346.3
GTEX-1B8L1-0011-R2a-SM-9OSVL 60-69 years, male 319.9
GTEX-13NYS-0011-R2b-SM-5MR4G 60-69 years, male 318.9
GTEX-15ER7-0011-R2a-SM-6M46O 20-29 years, female 315.7
GTEX-13O3Q-0011-R2b-SM-5KM3K 50-59 years, male 308.2
GTEX-1HB9E-0011-R2b-SM-A96RW 50-59 years, male 307.5
GTEX-1B933-0011-R2b-SM-7IGNM 50-59 years, female 291.3
GTEX-1N2EF-0011-R2b-SM-F6482 60-69 years, male 286.0
GTEX-12WSF-0011-R2a-SM-5DUVU 70-79 years, male 285.1
GTEX-1CB4J-0011-R2a-SM-9WG5N 60-69 years, male 284.6
GTEX-13OW7-0011-R2b-SM-H6Q8E 50-59 years, male 282.1
GTEX-12ZZX-0011-R2a-SM-5EGLG 40-49 years, female 279.7
GTEX-15SHU-0011-R2a-SM-GPRXS 40-49 years, female 275.8
GTEX-1LVAO-0011-R2a-SM-EYYX1 60-69 years, male 275.4
GTEX-1GN73-0011-R2a-SM-CJI2V 60-69 years, male 275.3
GTEX-11NUK-0011-R2a-SM-GINAO 50-59 years, male 274.1
GTEX-11TUW-0011-R2b-SM-DO92T 60-69 years, male 272.3
GTEX-1399T-0011-R2b-SM-5DUXM 60-69 years, male 270.9
GTEX-13PDP-0011-R2b-SM-5O9DH 60-69 years, male 270.3
GTEX-WHSE-0011-R2A-SM-3P5ZL 20-29 years, male 268.6
GTEX-12WSH-0011-R2a-SM-5GU68 50-59 years, male 268.2
GTEX-13OW6-0011-R2a-SM-5L3HG 50-59 years, male 265.9
GTEX-1QMI2-0011-R2b-SM-F648R 60-69 years, male 261.4
GTEX-13OVJ-0011-R2b-SM-5L3GP 50-59 years, female 259.3
GTEX-X4EP-0011-R2B-SM-3P625 60-69 years, female 259.2
GTEX-1F75B-0011-R2a-SM-ARL8I 50-59 years, male 256.0
GTEX-1JN1M-0011-R2b-SM-G9EPE 60-69 years, female 252.5
GTEX-14BIM-0011-R2b-SM-69LQ6 60-69 years, female 251.4
GTEX-1PIIG-0011-R2b-SM-F648W 30-39 years, male 251.0
GTEX-WVLH-0011-R2A-SM-3MJFJ 50-59 years, male 249.3
GTEX-1H3VE-0011-R2a-SM-CE6SA 40-49 years, male 249.2
GTEX-11GSP-0011-R2b-SM-9QEGE 60-69 years, female 247.4
GTEX-1A3MX-0011-R2b-SM-7EWFL 60-69 years, male 247.2
GTEX-1LH75-0011-R2b-SM-EYYWQ 50-59 years, female 247.1
GTEX-1IY9M-0011-R2a-SM-D4P29 60-69 years, male 246.9
GTEX-13SLX-0011-R2b-SM-5S2VP 50-59 years, female 244.2
GTEX-1N2EE-0011-R2a-SM-F649F 60-69 years, male 243.9
GTEX-1CB4G-0011-R2a-SM-9QEGQ 60-69 years, male 242.7
GTEX-14C5O-0011-R2a-SM-5ZZV2 60-69 years, male 238.6
GTEX-1HT8W-0011-R2a-SM-CMKH9 30-39 years, male 231.8
GTEX-1HFI6-0011-R2a-SM-CMKH5 40-49 years, male 231.4
GTEX-14PN4-0011-R2a-SM-6EU2Y 50-59 years, male 231.0
GTEX-RN5K-0011-R2A-SM-GQ1CA 50-59 years, female 230.6
GTEX-X585-0011-R2B-SM-46MVF 50-59 years, male 229.5
GTEX-1EKGG-0011-R2a-SM-CE6R8 60-69 years, male 228.9
GTEX-13G51-0011-R2b-SM-5LZXS 60-69 years, male 228.7
GTEX-ZAJG-0011-R2a-SM-GNTAX 50-59 years, female 228.0
GTEX-15CHQ-0011-R2b-SM-6AJAD 60-69 years, male 225.9
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 225.8
GTEX-1GZ2Q-0011-R2b-SM-9OSWO 40-49 years, male 224.1
GTEX-1192X-0011-R2b-SM-GI4VV 50-59 years, male 224.0
GTEX-1MA7X-0011-R2b-SM-EZ6MT 60-69 years, male 221.4
GTEX-11DZ1-0011-R2a-SM-DNZZM 50-59 years, male 220.3
GTEX-12696-0011-R2b-SM-GHWPY 60-69 years, male 220.3
GTEX-1LSNL-0011-R2a-SM-EZ6MK 50-59 years, male 215.1
GTEX-WL46-0011-R2A-SM-3LK6O 50-59 years, male 214.0
GTEX-1O9I2-0011-R2b-SM-F3K53 50-59 years, male 213.5
GTEX-111FC-0011-R2a-SM-GIN8S 60-69 years, male 213.2
GTEX-1E1VI-0011-R2a-SM-9QEGS 50-59 years, male 210.5
GTEX-1JMQK-0011-R2a-SM-EYYXQ 60-69 years, male 210.2
GTEX-1IGQW-0011-R2b-SM-D4P26 60-69 years, male 210.0
GTEX-1H1ZS-0011-R2b-SM-CL54Q 70-79 years, male 208.7
GTEX-NPJ7-0011-R2a-SM-2I3GF 60-69 years, female 208.7
GTEX-1H23P-0011-R2a-SM-CKZP3 60-69 years, male 207.7
GTEX-1R9PO-0011-R2a-SM-F2TBH 60-69 years, female 207.6
GTEX-ZZPT-0011-R2a-SM-GNTB1 50-59 years, male 206.3
GTEX-ZAK1-0011-R2a-SM-GPRX1 50-59 years, female 205.4
GTEX-15EO6-0011-R2a-SM-6M46R 50-59 years, male 204.2
GTEX-145LS-0011-R2a-SM-5PNZI 60-69 years, female 203.2
GTEX-1H1DG-0011-R2a-SM-ADEIQ 70-79 years, male 202.8
GTEX-14JG1-0011-R2a-SM-5ZZVE 40-49 years, male 202.6
GTEX-13RTJ-0011-R2a-SM-5PNW9 60-69 years, male 202.3
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 199.8
GTEX-1EU9M-0011-R2b-SM-9QEH7 60-69 years, male 198.7
GTEX-1HSMO-0011-R2a-SM-CL553 60-69 years, male 198.4
GTEX-1JJ6O-0011-R2a-SM-EY5ZO 60-69 years, male 197.8
GTEX-1J1OQ-0011-R2b-SM-ARU88 40-49 years, female 197.1
GTEX-1MCQQ-0011-R2a-SM-F649V 60-69 years, male 196.5
GTEX-1LSVX-0011-R2a-SM-G8OL9 60-69 years, male 195.5
GTEX-X4XX-0011-R2A-SM-3P623 60-69 years, male 195.4
GTEX-Q2AG-0011-R2A-SM-2HMIT 40-49 years, female 193.3
GTEX-1B8SG-0011-R2b-SM-79OOT 50-59 years, male 193.2
GTEX-1F48J-0011-R2a-SM-CL535 50-59 years, female 193.2
GTEX-13N2G-0011-R2a-SM-5MR4Q 60-69 years, male 190.8
GTEX-1PPGY-0011-R2b-SM-F33YW 60-69 years, male 190.6
GTEX-1HR98-0011-R2a-SM-ARL7A 60-69 years, male 190.4
GTEX-1445S-0011-R2b-SM-5PNUH 60-69 years, male 190.3
GTEX-132Q8-0011-R2b-SM-5EQ5Z 60-69 years, male 189.9
GTEX-13NYB-0011-R2a-SM-5MR3C 40-49 years, male 189.7
GTEX-1JMQJ-0011-R2a-SM-F6493 50-59 years, male 189.6
GTEX-17EVP-0011-R2a-SM-7LG4W 40-49 years, male 189.4
GTEX-XLM4-0011-R2B-SM-4AT5Z 60-69 years, male 188.0
GTEX-ZV68-0011-R2a-SM-4YCDK 50-59 years, female 187.8
GTEX-1LG7Y-0011-R2b-SM-G8LMM 50-59 years, male 187.7
GTEX-11GS4-0011-R2a-SM-DO942 60-69 years, male 186.9
GTEX-1IKJJ-0011-R2b-SM-ARZLJ 60-69 years, male 186.8
GTEX-13SLW-0011-R2b-SM-5O9C6 70-79 years, male 186.4
GTEX-1A8G7-0011-R2a-SM-7IGQI 60-69 years, male 185.6
GTEX-15DYW-0011-R2b-SM-7KUKY 60-69 years, female 184.6
GTEX-1117F-0011-R2b-SM-GI4VL 60-69 years, female 184.4
GTEX-1NV5F-0011-R2a-SM-G8LME 60-69 years, female 184.3
GTEX-15G19-0011-R2b-SM-H6Q7S 60-69 years, male 183.7
GTEX-R55E-0011-R2A-SM-EYYV9 20-29 years, male 181.7
GTEX-13FXS-0011-R2b-SM-5K7XX 50-59 years, male 181.6
GTEX-XMD1-0011-R2B-SM-4AT5N 60-69 years, male 180.9
GTEX-1GMR8-0011-R2a-SM-CE6RD 50-59 years, female 180.5
GTEX-131XH-0011-R2b-SM-5DUVY 50-59 years, male 180.4
GTEX-13X6K-0011-R2b-SM-5P9K3 60-69 years, female 179.9
GTEX-YFC4-0011-R2a-SM-4V6DZ 40-49 years, female 179.5
GTEX-11GSO-0011-R2a-SM-57WDF 60-69 years, male 178.9
GTEX-13OW8-0011-R2a-SM-5L3G2 60-69 years, male 177.2
GTEX-1PWST-0011-R2b-SM-F3K5I 70-79 years, male 176.1
GTEX-1MJK2-0011-R2b-SM-EXUS5 50-59 years, male 175.6
GTEX-1GTWX-0011-R2b-SM-ADEH5 60-69 years, male 174.9
GTEX-1I19N-0011-R2b-SM-GPRYG 70-79 years, male 174.8
GTEX-1RLM8-0011-R2a-SM-EZ6N4 50-59 years, male 174.3
GTEX-1F6I4-0011-R2a-SM-CL536 60-69 years, male 173.9
GTEX-1F6IF-0011-R2b-SM-9QEHB 60-69 years, male 172.0
GTEX-13OVL-0011-R2b-SM-H65ZN 50-59 years, male 171.9
GTEX-1I1GS-0011-R2b-SM-CMKHG 60-69 years, male 171.9
GTEX-15DCD-0011-R2b-SM-6LPIE 70-79 years, female 170.6
GTEX-1B996-0011-R2a-SM-7IGON 60-69 years, male 170.4
GTEX-1JMPZ-0011-R2a-SM-G8LLS 30-39 years, male 170.3
GTEX-QDT8-0011-R2A-SM-32PKQ 30-39 years, female 170.1
GTEX-13X6I-0011-R2b-SM-5PNWQ 60-69 years, male 169.5
GTEX-1P4AB-0011-R2a-SM-F649K 50-59 years, male 168.4
GTEX-13CF2-0011-R2a-SM-5L3DC 60-69 years, male 168.1
GTEX-11EMC-0011-R2b-SM-DO114 60-69 years, female 167.5
GTEX-13O3O-0011-R2b-SM-5P9H1 60-69 years, female 166.5
GTEX-14PJO-0011-R2a-SM-5ZZVF 60-69 years, male 166.4
GTEX-1H3O1-0011-R2b-SM-CKZOT 60-69 years, male 166.3
GTEX-ZAB4-0011-R2a-SM-4RGNP 40-49 years, male 165.8
GTEX-1HBPH-0011-R2a-SM-GQ1DS 40-49 years, female 165.6
GTEX-17HG3-0011-R2a-SM-7MGVX 30-39 years, female 165.5
GTEX-11TTK-0011-R2b-SM-GJ3PU 60-69 years, female 164.1
GTEX-ZYY3-0011-R2a-SM-GNTB2 60-69 years, female 164.0
GTEX-15RJE-0011-R2b-SM-79OMP 40-49 years, male 163.2
GTEX-1NV8Z-0011-R2b-SM-F648N 60-69 years, male 162.8
GTEX-1C6VR-0011-R2a-SM-7RHGZ 60-69 years, male 162.1
GTEX-1I1GV-0011-R2a-SM-ARZLF 60-69 years, male 160.6
GTEX-1RQEC-0011-R2b-SM-EY5ZT 60-69 years, male 160.5
GTEX-14ASI-0011-R2b-SM-5YY9H 60-69 years, male 156.5
GTEX-11WQC-0011-R2a-SM-DO927 60-69 years, male 155.3
GTEX-1KD5A-0011-R2b-SM-G9EPP 50-59 years, male 155.3
GTEX-QVJO-0011-R2A-SM-2S1QK 60-69 years, female 154.5
GTEX-1KWVE-0011-R2a-SM-G8OLX 30-39 years, male 153.4
GTEX-QMR6-0011-R2A-SM-32PKV 50-59 years, male 153.1
GTEX-11PRG-0011-R2a-SM-69LQ5 50-59 years, male 152.7
GTEX-T6MN-0011-R2A-SM-32QOW 50-59 years, male 152.1
GTEX-1IDJH-0011-R2a-SM-GPI9D 70-79 years, male 151.9
GTEX-1GN1U-0011-R2a-SM-CL53A 50-59 years, female 151.4
GTEX-ZDXO-0011-R2b-SM-4WKFG 60-69 years, male 151.3
GTEX-T2IS-0011-R2A-SM-32QPF 20-29 years, female 150.9
GTEX-1KD4Q-0011-R2a-SM-F649I 40-49 years, male 149.7
GTEX-1GN2E-0011-R2a-SM-9WG7D 60-69 years, male 149.5
GTEX-16Z82-0011-R2b-SM-79OK9 60-69 years, male 148.5
GTEX-14BIN-0011-R2a-SM-5S2RJ 50-59 years, female 146.9
GTEX-YJ89-0011-R2b-SM-4RGLT 60-69 years, male 146.0
GTEX-1RQED-0011-R2a-SM-F3K5T 60-69 years, male 143.3
GTEX-1RDX4-0011-R2b-SM-F649Z 50-59 years, female 142.8
GTEX-1POEN-0011-R2b-SM-G8LLP 30-39 years, female 140.3
GTEX-16GPK-0011-R2a-SM-GRR1F 60-69 years, male 138.2
GTEX-13QJC-0011-R2b-SM-5PNUN 60-69 years, female 137.9
GTEX-12WSD-0011-R2a-SM-5LZWB 60-69 years, female 135.6
GTEX-11UD1-0011-R2b-SM-5BC6O 40-49 years, female 135.0
GTEX-147GR-0011-R2b-SM-5S2RQ 60-69 years, male 134.1
GTEX-1J8Q2-0011-R2b-SM-EAZ2X 60-69 years, male 133.3
GTEX-RU72-0011-R2A-SM-2TF6O 50-59 years, female 133.2
GTEX-11ZTS-0011-R2b-SM-5BC75 60-69 years, female 132.2
GTEX-1R9K4-0011-R2b-SM-G8LLF 60-69 years, male 132.2
GTEX-S7SE-0011-R2A-SM-2XCDC 50-59 years, male 131.2
GTEX-1LKK1-0011-R2b-SM-G8OLT 50-59 years, female 131.1
GTEX-12WSA-0011-R2a-SM-57WDK 60-69 years, male 129.9
GTEX-UTHO-0011-R2A-SM-3GIKC 60-69 years, male 128.2
GTEX-OHPN-0011-R2A-SM-2I5FB 60-69 years, female 126.1
GTEX-139TS-0011-R2b-SM-5J1MX 60-69 years, male 123.8
GTEX-1IL2U-0011-R2a-SM-ARU6V 60-69 years, male 123.0
GTEX-1I1CD-0011-R2a-SM-CM2T3 60-69 years, female 122.5
GTEX-1LB8K-0011-R2a-SM-EZ6MQ 50-59 years, male 120.7
GTEX-ZE9C-0011-R2a-SM-4WKGH 60-69 years, male 120.6
GTEX-1N5O9-0011-R2a-SM-G8LM1 60-69 years, male 105.3
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SUBSTANTIA NIGRA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

140.9
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 140.9
FF:10158-103A5 76 years, female 140.9

SUBSTANTIA NIGRA - Macaque RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

98.6
Macaque sample Sample description nTPM
Substantia nigra
nTPM: 98.6
Samples: 1

Max nTPM: 98.6
Min nTPM: 98.6
Sample A 98.6

SUBSTANTIA NIGRA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

93.2
Pig sample Sample description nTPM
Substantia nigra
nTPM: 93.2
Samples: 3

Max nTPM: 115.2
Min nTPM: 71.9
Sample A Female 115.2
Sample B Female 71.9
Sample C Male 92.4

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