A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
501.8
nTPM
Monaco:
326.8
nTPM
Schmiedel:
88.8
TPM
NK-CELLS - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
501.8
HPA sample
nTPM
NK-cell nTPM: 501.8
Samples: 6
Max nTPM: 589.6
Min nTPM: 349.4
P10809_1013
355.7
P10809_1033
574.0
P10809_1052
556.2
P10809_1071
589.6
P10809_1093
349.4
P10809_1103
585.6
NK-CELLS - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
326.8
Monaco sample
nTPM
NK-cell nTPM: 326.8
Samples: 4
Max nTPM: 389.5
Min nTPM: 207.1
RHH5316_R3683
358.1
RHH5224_R3596
389.5
RHH5253_R3625
207.1
RHH5282_R3654
352.3
NK-CELLS - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
88.8
Schmiedel sample id
TPM
NK-cell TPM: 88.8
Samples: 90
Max TPM: 112.0
Min TPM: 67.5
NK_1
112.0
NK_2
110.0
NK_3
109.4
NK_4
107.2
NK_5
104.0
NK_6
104.0
NK_7
103.0
NK_8
102.7
NK_9
102.3
NK_10
102.0
NK_11
101.2
NK_12
100.8
NK_13
99.7
NK_14
99.4
NK_15
98.3
NK_16
98.2
NK_17
96.7
NK_18
95.8
NK_19
95.2
NK_20
94.9
NK_21
94.4
NK_22
94.3
NK_23
94.3
NK_24
93.8
NK_25
93.8
NK_26
93.3
NK_27
92.6
NK_28
92.5
NK_29
92.5
NK_30
92.5
NK_31
92.4
NK_32
92.1
NK_33
92.1
NK_34
91.9
NK_35
91.6
NK_36
91.4
NK_37
90.9
NK_38
90.8
NK_39
90.7
NK_40
90.4
NK_41
90.3
NK_42
90.2
NK_43
89.9
NK_44
89.7
NK_45
89.4
NK_46
89.1
NK_47
89.0
NK_48
89.0
NK_49
88.4
NK_50
88.4
NK_51
88.2
NK_52
88.0
NK_53
87.9
NK_54
87.7
NK_55
87.3
NK_56
87.0
NK_57
86.8
NK_58
86.6
NK_59
86.5
NK_60
85.8
NK_61
85.0
NK_62
84.8
NK_63
84.2
NK_64
83.7
NK_65
83.6
NK_66
82.8
NK_67
82.6
NK_68
82.3
NK_69
82.3
NK_70
81.6
NK_71
81.3
NK_72
81.3
NK_73
81.0
NK_74
78.8
NK_75
78.7
NK_76
78.7
NK_77
78.6
NK_78
76.6
NK_79
76.4
NK_80
76.3
NK_81
75.3
NK_82
75.1
NK_83
74.4
NK_84
74.3
NK_85
73.4
NK_86
73.1
NK_87
72.1
NK_88
70.6
NK_89
68.0
NK_90
67.5
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