A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
490.5
nTPM
Monaco:
437.8
nTPM
Schmiedel:
74.1
TPM
MONOCYTES - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
490.5
HPA sample
nTPM
Classical monocyte nTPM: 399.5
Samples: 6
Max nTPM: 496.9
Min nTPM: 309.6
P10809_1003
413.1
P10809_1020
496.9
P10809_1039
485.8
P10809_1058
309.6
P10809_1080
311.1
P10809_1107
380.5
Intermediate monocyte nTPM: 490.5
Samples: 6
Max nTPM: 592.6
Min nTPM: 360.7
P10809_1004
414.6
P10809_1023
592.6
P10809_1042
525.5
P10809_1061
535.0
P10809_1081
360.7
P10809_1108
514.6
Non-classical monocyte nTPM: 483.9
Samples: 5
Max nTPM: 560.3
Min nTPM: 373.6
P10809_1005
425.5
P10809_1053
555.1
P10809_1072
560.3
P10809_1082
373.6
P10809_1109
505.0
MONOCYTES - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
437.8
Monaco sample
nTPM
Classical monocyte nTPM: 389.9
Samples: 4
Max nTPM: 502.5
Min nTPM: 320.2
RHH5313_R3680
343.5
RHH5221_R3593
320.2
RHH5250_R3622
502.5
RHH5279_R3651
393.2
Intermediate monocyte nTPM: 437.9
Samples: 4
Max nTPM: 585.4
Min nTPM: 295.1
RHH5314_R3681
548.1
RHH5222_R3594
322.8
RHH5251_R3623
295.1
RHH5280_R3652
585.4
Non-classical monocyte nTPM: 365.7
Samples: 4
Max nTPM: 442.6
Min nTPM: 284.1
RHH5315_R3682
432.6
RHH5223_R3595
284.1
RHH5252_R3624
303.4
RHH5281_R3653
442.6
MONOCYTES - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
74.1
Schmiedel sample id
TPM
Classical monocyte TPM: 62.3
Samples: 91
Max TPM: 76.9
Min TPM: 47.4
MONOCYTES_1
76.9
MONOCYTES_2
75.1
MONOCYTES_3
74.7
MONOCYTES_4
73.7
MONOCYTES_5
71.3
MONOCYTES_6
71.2
MONOCYTES_7
71.1
MONOCYTES_8
70.8
MONOCYTES_9
70.8
MONOCYTES_10
70.8
MONOCYTES_11
70.7
MONOCYTES_12
70.5
MONOCYTES_13
68.3
MONOCYTES_14
68.0
MONOCYTES_15
68.0
MONOCYTES_16
67.6
MONOCYTES_17
67.3
MONOCYTES_18
66.5
MONOCYTES_19
66.3
MONOCYTES_20
66.3
MONOCYTES_21
66.3
MONOCYTES_22
66.1
MONOCYTES_23
65.3
MONOCYTES_24
65.3
MONOCYTES_25
65.2
MONOCYTES_26
65.1
MONOCYTES_27
65.1
MONOCYTES_28
64.9
MONOCYTES_29
64.8
MONOCYTES_30
64.7
MONOCYTES_31
64.6
MONOCYTES_32
64.4
MONOCYTES_33
64.3
MONOCYTES_34
64.3
MONOCYTES_35
64.1
MONOCYTES_36
63.8
MONOCYTES_37
63.7
MONOCYTES_38
63.6
MONOCYTES_39
63.5
MONOCYTES_40
63.4
MONOCYTES_41
63.4
MONOCYTES_42
62.8
MONOCYTES_43
62.7
MONOCYTES_44
62.3
MONOCYTES_45
62.0
MONOCYTES_46
61.8
MONOCYTES_47
61.5
MONOCYTES_48
61.1
MONOCYTES_49
61.0
MONOCYTES_50
60.7
MONOCYTES_51
60.6
MONOCYTES_52
60.4
MONOCYTES_53
60.2
MONOCYTES_54
59.7
MONOCYTES_55
59.6
MONOCYTES_56
59.5
MONOCYTES_57
59.5
MONOCYTES_58
59.4
MONOCYTES_59
59.4
MONOCYTES_60
59.3
MONOCYTES_61
59.3
MONOCYTES_62
59.0
MONOCYTES_63
58.9
MONOCYTES_64
58.9
MONOCYTES_65
58.8
MONOCYTES_66
58.6
MONOCYTES_67
58.4
MONOCYTES_68
58.1
MONOCYTES_69
58.0
MONOCYTES_70
57.7
MONOCYTES_71
57.5
MONOCYTES_72
57.5
MONOCYTES_73
57.5
MONOCYTES_74
57.5
MONOCYTES_75
57.3
MONOCYTES_76
57.2
MONOCYTES_77
57.2
MONOCYTES_78
57.1
MONOCYTES_79
56.7
MONOCYTES_80
56.7
MONOCYTES_81
56.6
MONOCYTES_82
56.0
MONOCYTES_83
56.0
MONOCYTES_84
55.3
MONOCYTES_85
55.2
MONOCYTES_86
54.9
MONOCYTES_87
54.6
MONOCYTES_88
53.1
MONOCYTES_89
52.6
MONOCYTES_90
51.9
MONOCYTES_91
47.4
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Non-classical monocyte TPM: 74.1
Samples: 90
Max TPM: 92.2
Min TPM: 58.1
M2_1
92.2
M2_2
92.0
M2_3
89.3
M2_4
87.8
M2_5
86.6
M2_6
85.2
M2_7
84.9
M2_8
84.9
M2_9
83.9
M2_10
83.5
M2_11
83.3
M2_12
83.2
M2_13
83.1
M2_14
82.5
M2_15
82.4
M2_16
82.0
M2_17
81.5
M2_18
81.2
M2_19
79.7
M2_20
79.6
M2_21
79.5
M2_22
78.0
M2_23
77.6
M2_24
77.5
M2_25
77.4
M2_26
77.3
M2_27
77.2
M2_28
77.0
M2_29
77.0
M2_30
76.8
M2_31
76.8
M2_32
76.7
M2_33
76.3
M2_34
75.9
M2_35
75.8
M2_36
75.4
M2_37
75.2
M2_38
75.1
M2_39
75.0
M2_40
75.0
M2_41
74.8
M2_42
74.3
M2_43
74.3
M2_44
74.1
M2_45
74.0
M2_46
73.9
M2_47
73.6
M2_48
72.6
M2_49
72.3
M2_50
72.1
M2_51
72.1
M2_52
72.1
M2_53
71.9
M2_54
71.8
M2_55
71.5
M2_56
71.3
M2_57
71.2
M2_58
71.1
M2_59
70.8
M2_60
70.5
M2_61
70.4
M2_62
70.2
M2_63
70.0
M2_64
69.8
M2_65
69.6
M2_66
69.6
M2_67
69.2
M2_68
69.1
M2_69
68.6
M2_70
68.5
M2_71
68.4
M2_72
68.3
M2_73
67.4
M2_74
67.3
M2_75
67.2
M2_76
67.1
M2_77
67.0
M2_78
66.7
M2_79
66.6
M2_80
66.5
M2_81
65.8
M2_82
65.5
M2_83
65.2
M2_84
65.0
M2_85
64.0
M2_86
63.7
M2_87
63.5
M2_88
61.3
M2_89
61.0
M2_90
58.1
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