A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
81.0
nTPM
Monaco:
125.7
nTPM
Schmiedel:
106.0
TPM
NK-CELLS - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
81.0
HPA sample
nTPM
NK-cell nTPM: 81.0
Samples: 6
Max nTPM: 113.6
Min nTPM: 53.2
P10809_1013
54.4
P10809_1033
110.2
P10809_1052
91.1
P10809_1071
113.6
P10809_1093
53.2
P10809_1103
63.3
NK-CELLS - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
125.7
Monaco sample
nTPM
NK-cell nTPM: 125.7
Samples: 4
Max nTPM: 158.2
Min nTPM: 100.6
RHH5316_R3683
100.6
RHH5224_R3596
158.2
RHH5253_R3625
131.9
RHH5282_R3654
112.1
NK-CELLS - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
106.0
Schmiedel sample id
TPM
NK-cell TPM: 106.0
Samples: 90
Max TPM: 142.1
Min TPM: 75.2
NK_1
142.1
NK_2
138.0
NK_3
132.2
NK_4
129.9
NK_5
129.7
NK_6
129.4
NK_7
128.5
NK_8
125.3
NK_9
124.5
NK_10
124.2
NK_11
124.1
NK_12
123.7
NK_13
121.7
NK_14
121.2
NK_15
121.1
NK_16
121.1
NK_17
120.5
NK_18
119.5
NK_19
118.3
NK_20
116.1
NK_21
115.9
NK_22
115.3
NK_23
114.0
NK_24
112.5
NK_25
112.4
NK_26
112.3
NK_27
112.3
NK_28
112.0
NK_29
112.0
NK_30
110.5
NK_31
110.5
NK_32
109.9
NK_33
109.8
NK_34
109.4
NK_35
108.6
NK_36
108.5
NK_37
108.1
NK_38
107.8
NK_39
107.8
NK_40
107.5
NK_41
107.3
NK_42
107.0
NK_43
107.0
NK_44
106.9
NK_45
106.2
NK_46
105.8
NK_47
105.6
NK_48
105.6
NK_49
105.5
NK_50
103.2
NK_51
102.8
NK_52
102.6
NK_53
102.4
NK_54
102.3
NK_55
101.3
NK_56
100.0
NK_57
99.9
NK_58
99.5
NK_59
99.4
NK_60
98.2
NK_61
98.0
NK_62
97.8
NK_63
97.4
NK_64
97.2
NK_65
97.1
NK_66
97.0
NK_67
96.8
NK_68
96.2
NK_69
96.1
NK_70
95.6
NK_71
95.4
NK_72
94.8
NK_73
94.7
NK_74
93.9
NK_75
93.7
NK_76
92.9
NK_77
92.2
NK_78
91.4
NK_79
91.3
NK_80
91.1
NK_81
90.5
NK_82
89.6
NK_83
85.9
NK_84
84.9
NK_85
84.5
NK_86
84.2
NK_87
83.9
NK_88
83.8
NK_89
82.6
NK_90
75.2
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