A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
48.1
nTPM
Monaco:
69.5
nTPM
Schmiedel:
48.6
TPM
MONOCYTES - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
48.1
HPA sample
nTPM
Classical monocyte nTPM: 25.0
Samples: 6
Max nTPM: 32.7
Min nTPM: 19.9
P10809_1003
26.4
P10809_1020
32.7
P10809_1039
28.8
P10809_1058
19.9
P10809_1080
20.0
P10809_1107
22.4
Intermediate monocyte nTPM: 36.4
Samples: 6
Max nTPM: 47.1
Min nTPM: 24.8
P10809_1004
32.7
P10809_1023
47.1
P10809_1042
45.6
P10809_1061
40.3
P10809_1081
24.8
P10809_1108
28.1
Non-classical monocyte nTPM: 48.1
Samples: 5
Max nTPM: 103.5
Min nTPM: 23.8
P10809_1005
36.3
P10809_1053
46.2
P10809_1072
103.5
P10809_1082
23.8
P10809_1109
30.9
MONOCYTES - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
69.5
Monaco sample
nTPM
Classical monocyte nTPM: 56.9
Samples: 4
Max nTPM: 65.6
Min nTPM: 50.6
RHH5313_R3680
57.1
RHH5221_R3593
54.1
RHH5250_R3622
65.6
RHH5279_R3651
50.6
Intermediate monocyte nTPM: 59.6
Samples: 4
Max nTPM: 75.3
Min nTPM: 38.9
RHH5314_R3681
58.2
RHH5222_R3594
75.3
RHH5251_R3623
38.9
RHH5280_R3652
66.0
Non-classical monocyte nTPM: 69.5
Samples: 4
Max nTPM: 87.8
Min nTPM: 52.3
RHH5315_R3682
77.9
RHH5223_R3595
87.8
RHH5252_R3624
59.8
RHH5281_R3653
52.3
MONOCYTES - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
48.6
Schmiedel sample id
TPM
Classical monocyte TPM: 30.0
Samples: 91
Max TPM: 37.7
Min TPM: 22.9
MONOCYTES_1
37.7
MONOCYTES_2
37.6
MONOCYTES_3
36.6
MONOCYTES_4
35.7
MONOCYTES_5
35.3
MONOCYTES_6
35.2
MONOCYTES_7
35.1
MONOCYTES_8
34.9
MONOCYTES_9
34.6
MONOCYTES_10
34.5
MONOCYTES_11
34.5
MONOCYTES_12
34.4
MONOCYTES_13
34.4
MONOCYTES_14
34.3
MONOCYTES_15
34.3
MONOCYTES_16
34.2
MONOCYTES_17
33.8
MONOCYTES_18
33.8
MONOCYTES_19
33.7
MONOCYTES_20
33.5
MONOCYTES_21
33.3
MONOCYTES_22
33.0
MONOCYTES_23
32.9
MONOCYTES_24
32.9
MONOCYTES_25
32.8
MONOCYTES_26
32.7
MONOCYTES_27
32.7
MONOCYTES_28
32.6
MONOCYTES_29
32.4
MONOCYTES_30
31.9
MONOCYTES_31
31.7
MONOCYTES_32
31.6
MONOCYTES_33
31.5
MONOCYTES_34
31.4
MONOCYTES_35
31.4
MONOCYTES_36
31.3
MONOCYTES_37
31.2
MONOCYTES_38
30.9
MONOCYTES_39
30.9
MONOCYTES_40
30.8
MONOCYTES_41
30.4
MONOCYTES_42
30.3
MONOCYTES_43
30.3
MONOCYTES_44
30.2
MONOCYTES_45
30.1
MONOCYTES_46
29.8
MONOCYTES_47
29.7
MONOCYTES_48
29.7
MONOCYTES_49
29.6
MONOCYTES_50
29.6
MONOCYTES_51
29.2
MONOCYTES_52
28.9
MONOCYTES_53
28.9
MONOCYTES_54
28.8
MONOCYTES_55
28.7
MONOCYTES_56
28.4
MONOCYTES_57
28.3
MONOCYTES_58
28.2
MONOCYTES_59
28.2
MONOCYTES_60
28.0
MONOCYTES_61
28.0
MONOCYTES_62
28.0
MONOCYTES_63
27.7
MONOCYTES_64
27.5
MONOCYTES_65
27.4
MONOCYTES_66
27.4
MONOCYTES_67
27.2
MONOCYTES_68
27.1
MONOCYTES_69
26.7
MONOCYTES_70
26.5
MONOCYTES_71
26.5
MONOCYTES_72
26.5
MONOCYTES_73
26.4
MONOCYTES_74
26.4
MONOCYTES_75
26.3
MONOCYTES_76
26.2
MONOCYTES_77
26.1
MONOCYTES_78
26.0
MONOCYTES_79
25.9
MONOCYTES_80
25.6
MONOCYTES_81
25.4
MONOCYTES_82
25.4
MONOCYTES_83
25.2
MONOCYTES_84
25.1
MONOCYTES_85
24.7
MONOCYTES_86
24.3
MONOCYTES_87
23.9
MONOCYTES_88
23.9
MONOCYTES_89
23.5
MONOCYTES_90
23.4
MONOCYTES_91
22.9
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Non-classical monocyte TPM: 48.6
Samples: 90
Max TPM: 58.9
Min TPM: 37.9
M2_1
58.9
M2_2
58.8
M2_3
58.0
M2_4
57.7
M2_5
56.6
M2_6
56.1
M2_7
55.8
M2_8
55.7
M2_9
55.4
M2_10
55.4
M2_11
54.4
M2_12
54.0
M2_13
53.9
M2_14
53.9
M2_15
53.5
M2_16
53.5
M2_17
53.3
M2_18
52.9
M2_19
52.8
M2_20
52.8
M2_21
52.6
M2_22
52.4
M2_23
52.2
M2_24
51.6
M2_25
51.5
M2_26
51.5
M2_27
51.4
M2_28
51.4
M2_29
51.3
M2_30
51.2
M2_31
50.9
M2_32
50.7
M2_33
50.4
M2_34
50.4
M2_35
50.4
M2_36
50.3
M2_37
50.0
M2_38
49.9
M2_39
49.6
M2_40
49.4
M2_41
49.4
M2_42
49.0
M2_43
48.8
M2_44
48.7
M2_45
48.6
M2_46
48.4
M2_47
48.3
M2_48
48.3
M2_49
48.2
M2_50
48.2
M2_51
48.2
M2_52
48.0
M2_53
48.0
M2_54
47.8
M2_55
47.8
M2_56
47.6
M2_57
47.3
M2_58
46.9
M2_59
46.2
M2_60
46.1
M2_61
46.1
M2_62
46.0
M2_63
46.0
M2_64
45.8
M2_65
45.3
M2_66
45.0
M2_67
44.9
M2_68
44.7
M2_69
44.7
M2_70
44.2
M2_71
44.0
M2_72
44.0
M2_73
43.9
M2_74
43.8
M2_75
43.7
M2_76
43.7
M2_77
43.4
M2_78
43.2
M2_79
42.7
M2_80
42.6
M2_81
42.4
M2_82
42.1
M2_83
41.9
M2_84
41.5
M2_85
41.1
M2_86
40.0
M2_87
39.9
M2_88
39.4
M2_89
38.5
M2_90
37.9
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