MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:116.8 nTPM
HPA Brain:31.5 nTPM
GTEx:116.8 nTPM
FANTOM5:69.4 Scaled Tags Per Million
Pig:41.9 nTPM
Mouse:18.8 nTPM
Allen mouse:1.0 Expression energy
BRAIN - SINGLE CELL RNA EXPRESSION

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 31.5
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 22.2
1870 Female, age 42, unknown 29.2
2411 Female, age 72, unknown 27.8
1827 Male, age 72, unknown 26.0
2019 Male, age 18, unknown 26.0
1830 Male, age 51, unknown 21.6
2828 Female, age 72, unknown 21.3
1833 Male, age 53, unknown 21.1
2219 Male, age 76, both hemispheres 19.5
2586 Male, age 75, left hemisphere 15.7
2666 Male, age 74, left hemisphere 14.3
Dorsal raphe nucleus
nTPM: 29.2
2298 Female, age 72, unknown 41.1
2047 Male, age 72, unknown 28.1
1828 Male, age 53, unknown 27.3
2750 Male, age 76, both hemispheres 25.4
2016 Female, age 72, unknown 24.0
Inferior colliculus
nTPM: 24.6
2097 Female, age 72, unknown 34.8
1890 Male, age 53, unknown 25.7
1848 Female, age 42, unknown 19.6
2849 Male, age 72, unknown 18.3
Median raphe nucleus
nTPM: 31.5
2220 Male, age 76, midline 31.5
Periaquaductal grey, anterior
nTPM: 24.5
1947 Male, age 18, unknown 25.0
1795 Male, age 51, unknown 24.5
2502 Female, age 75, unknown 23.8
Periaquaductal grey, dorsal
nTPM: 24.6
2850 Male, age 76, both hemispheres 27.8
1831 Male, age 72, unknown 25.1
2464 Female, age 72, unknown 23.4
1840 Male, age 53, unknown 22.2
Periaquaductal grey, lateral
nTPM: 22.5
2053 Male, age 18, unknown 23.1
2272 Male, age 74, both hemispheres 22.9
2140 Male, age 76, both hemispheres 21.4
Pretectal area
nTPM: 29.2
2224 Female, age 72, unknown 35.6
1817 Female, age 42, unknown 33.7
2007 Male, age 72, unknown 33.7
2667 Female, age 75, unknown 32.6
1816 Male, age 51, unknown 30.0
2273 Male, age 74, both hemispheres 28.8
1815 Male, age 53, unknown 28.2
1944 Female, age 72, unknown 28.2
2316 Male, age 76, right hemisphere 24.7
2825 Male, age 18, unknown 23.8
2407 Male, age 75, both hemispheres 21.8
Red nucleus
nTPM: 24.3
1821 Female, age 72, unknown 31.9
1954 Female, age 42, unknown 30.8
1865 Male, age 51, unknown 28.9
2823 Male, age 76, right hemisphere 27.2
1904 Male, age 53, unknown 26.8
2503 Female, age 72, unknown 26.5
2785 Male, age 18, unknown 25.3
2725 Female, age 75, unknown 23.7
2769 Male, age 72, unknown 21.7
2227 Male, age 72, unknown 19.2
2584 Male, age 75, left hemisphere 17.2
2588 Male, age 74, left hemisphere 13.1
Substantia nigra
nTPM: 27.0
1916 Female, age 42, unknown 34.5
2241 Male, age 72, unknown 32.1
2665 Male, age 74, both hemispheres 31.1
1889 Female, age 72, unknown 30.3
1851 Male, age 51, unknown 28.6
1941 Male, age 53, unknown 26.3
2699 Male, age 18, unknown 26.3
2590 Female, age 75, unknown 23.7
2409 Female, age 72, unknown 20.5
2583 Male, age 75, right hemisphere 16.1
Superior colliculus
nTPM: 23.3
1895 Male, age 76, right hemisphere 26.6
1913 Female, age 42, unknown 25.6
1796 Male, age 53, unknown 25.3
2587 Male, age 74, left hemisphere 24.9
1995 Male, age 72, unknown 23.8
2668 Female, age 75, unknown 23.4
2087 Female, age 72, unknown 23.0
2261 Male, age 18, unknown 21.1
1839 Male, age 51, unknown 19.8
2664 Male, age 75, both hemispheres 19.6
Ventral tegmental area
nTPM: 25.6
1915 Female, age 42, unknown 32.1
2410 Female, age 72, unknown 26.3
2218 Male, age 76, both hemispheres 26.1
2021 Male, age 53, unknown 23.6
2223 Female, age 72, unknown 23.5
1942 Male, age 51, unknown 21.7

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 116.8
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 116.8
Samples: 183

Max nTPM: 215.5
Min nTPM: 70.4
Std nTPM: 26.8
Median nTPM: 112.0
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 215.5
GTEX-1CB4J-0011-R2a-SM-9WG5N 60-69 years, male 207.8
GTEX-14BIM-0011-R2b-SM-69LQ6 60-69 years, female 207.3
GTEX-1IGQW-0011-R2b-SM-D4P26 60-69 years, male 202.7
GTEX-11GS4-0011-R2a-SM-DO942 60-69 years, male 200.7
GTEX-1LVAO-0011-R2a-SM-EYYX1 60-69 years, male 187.7
GTEX-13OVJ-0011-R2b-SM-5L3GP 50-59 years, female 187.5
GTEX-1H1ZS-0011-R2b-SM-CL54Q 70-79 years, male 184.8
GTEX-12696-0011-R2b-SM-GHWPY 60-69 years, male 183.4
GTEX-11TUW-0011-R2b-SM-DO92T 60-69 years, male 178.6
GTEX-1JN1M-0011-R2b-SM-G9EPE 60-69 years, female 168.7
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 69.4
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 69.4
FF:10158-103A5 76 years, female 69.4

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 41.9
Pig sample Sample description nTPM
Substantia nigra
nTPM: 38.5
Samples: 4

Max nTPM: 56.8
Min nTPM: 28.2
Sample A Female 56.8
Sample B Female 35.0
Sample C Male 34.0
Sample D Male 28.2
Midbrain
nTPM: 41.9
Samples: 4

Max nTPM: 58.1
Min nTPM: 32.7
Sample A Female 58.1
Sample B Female 41.6
Sample C Male 35.2
Sample D Male 32.7
Periaqueductal gray
nTPM: 31.4
Samples: 3

Max nTPM: 33.1
Min nTPM: 28.5
Sample B Female 33.1
Sample C Male 32.7
Sample D Male 28.5
Superior colliculi
nTPM: 39.3
Samples: 4

Max nTPM: 51.6
Min nTPM: 32.3
Sample A Female 51.6
Sample B Female 35.7
Sample C Male 37.6
Sample D Male 32.3

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 18.8
Mouse sample Sample description nTPM
Midbrain
nTPM: 18.8
Samples: 4

Max nTPM: 22.7
Min nTPM: 15.7
Sample A Male 19.6
Sample B Male 22.7
Sample C Female 15.7
Sample D Female 17.2

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 1.0
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 1.0
76098393 Antisense, RP_060626_01_G06, Mouse strain C57BL/6J (56 days, male) 1.0

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