BETA
MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:299.6 nTPM
HPA Brain:411.1 nTPM
GTEx:299.6 nTPM
FANTOM5:480.6 Scaled Tags Per Million
Macaque:218.2 nTPM
Mouse:284.0 nTPM
Rat:178.4 nTPM
Pig:300.1 nTPM
BRAIN - SINGLE CELL RNA EXPRESSION

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 411.1
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 388.0
2586 Male, age 75, left hemisphere 545.8
2666 Male, age 74, left hemisphere 467.9
2828 Female, age 72, unknown 409.1
1827 Male, age 72, unknown 403.9
1833 Male, age 53, unknown 376.2
1870 Female, age 42, unknown 370.9
1830 Male, age 51, unknown 348.5
2411 Female, age 72, unknown 336.1
2219 Male, age 76, both hemispheres 324.9
2019 Male, age 18, unknown 296.5
Dorsal raphe nucleus
nTPM: 353.8
2047 Male, age 72, unknown 387.0
1828 Male, age 53, unknown 383.8
2750 Male, age 76, both hemispheres 355.5
2298 Female, age 72, unknown 340.9
2016 Female, age 72, unknown 301.8
Inferior colliculus
nTPM: 332.7
2849 Male, age 72, unknown 421.4
1848 Female, age 42, unknown 348.8
1890 Male, age 53, unknown 286.1
2097 Female, age 72, unknown 274.5
Median raphe nucleus
nTPM: 411.1
2220 Male, age 76, midline 411.1
Periaquaductal grey, anterior
nTPM: 395.9
1947 Male, age 18, unknown 424.8
2502 Female, age 75, unknown 386.2
1795 Male, age 51, unknown 376.8
Periaquaductal grey, dorsal
nTPM: 328.4
2850 Male, age 76, both hemispheres 390.3
1840 Male, age 53, unknown 320.1
2464 Female, age 72, unknown 314.8
1831 Male, age 72, unknown 288.3
Periaquaductal grey, lateral
nTPM: 302.1
2053 Male, age 18, unknown 324.1
2140 Male, age 76, both hemispheres 316.4
2272 Male, age 74, both hemispheres 265.8
Pretectal area
nTPM: 346.4
1817 Female, age 42, unknown 405.3
1816 Male, age 51, unknown 394.2
2825 Male, age 18, unknown 392.5
2667 Female, age 75, unknown 386.1
1815 Male, age 53, unknown 367.8
2007 Male, age 72, unknown 351.0
1944 Female, age 72, unknown 341.2
2407 Male, age 75, both hemispheres 326.8
2224 Female, age 72, unknown 312.0
2316 Male, age 76, right hemisphere 288.6
2273 Male, age 74, both hemispheres 244.8
Red nucleus
nTPM: 364.1
1821 Female, age 72, unknown 435.2
2584 Male, age 75, left hemisphere 406.3
2769 Male, age 72, unknown 382.4
2227 Male, age 72, unknown 363.6
2823 Male, age 76, right hemisphere 361.0
1954 Female, age 42, unknown 360.3
1865 Male, age 51, unknown 359.2
2725 Female, age 75, unknown 358.5
2588 Male, age 74, left hemisphere 356.3
1904 Male, age 53, unknown 339.9
2503 Female, age 72, unknown 328.4
2785 Male, age 18, unknown 318.0
Substantia nigra
nTPM: 410.1
1916 Female, age 42, unknown 514.7
1941 Male, age 53, unknown 489.0
2699 Male, age 18, unknown 471.3
1851 Male, age 51, unknown 431.7
2665 Male, age 74, both hemispheres 415.4
2583 Male, age 75, right hemisphere 398.5
1889 Female, age 72, unknown 393.1
2241 Male, age 72, unknown 355.7
2590 Female, age 75, unknown 322.3
2409 Female, age 72, unknown 309.7
Superior colliculus
nTPM: 353.4
2664 Male, age 75, both hemispheres 469.5
2668 Female, age 75, unknown 404.6
1796 Male, age 53, unknown 380.1
1839 Male, age 51, unknown 365.2
2261 Male, age 18, unknown 333.7
2587 Male, age 74, left hemisphere 332.5
1895 Male, age 76, right hemisphere 328.3
2087 Female, age 72, unknown 324.7
1913 Female, age 42, unknown 316.1
1995 Male, age 72, unknown 279.4
Ventral tegmental area
nTPM: 362.5
1915 Female, age 42, unknown 410.2
2410 Female, age 72, unknown 388.4
2223 Female, age 72, unknown 382.6
2218 Male, age 76, both hemispheres 368.6
1942 Male, age 51, unknown 327.4
2021 Male, age 53, unknown 297.7

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 299.6
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 299.6
Samples: 183

Max nTPM: 591.1
Min nTPM: 154.0
Std nTPM: 65.3
Median nTPM: 291.3
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 591.1
GTEX-1H3VE-0011-R2a-SM-CE6SA 40-49 years, male 473.1
GTEX-1O9I2-0011-R2b-SM-F3K53 50-59 years, male 443.2
GTEX-1LVAO-0011-R2a-SM-EYYX1 60-69 years, male 436.2
GTEX-14BIM-0011-R2b-SM-69LQ6 60-69 years, female 435.9
GTEX-13NYS-0011-R2b-SM-5MR4G 60-69 years, male 435.4
GTEX-11NUK-0011-R2a-SM-GINAO 50-59 years, male 423.5
GTEX-15ER7-0011-R2a-SM-6M46O 20-29 years, female 423.2
GTEX-RU72-0011-R2A-SM-2TF6O 50-59 years, female 423.1
GTEX-13O3Q-0011-R2b-SM-5KM3K 50-59 years, male 417.1
GTEX-1B8L1-0011-R2a-SM-9OSVL 60-69 years, male 414.4
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 480.6
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 480.6
FF:10158-103A5 76 years, female 480.6

MIDBRAIN - Macaque RNA-seq
Max subtype nTPMi 218.2
Macaque sample Sample description nTPM
Substantia nigra
nTPM: 186.5
Samples: 1

Max nTPM: 186.5
Min nTPM: 186.5
Sample A 186.5
Midbrain
nTPM: 170.6
Samples: 1

Max nTPM: 170.6
Min nTPM: 170.6
Sample A 170.6
Superior colliculi
nTPM: 218.2
Samples: 1

Max nTPM: 218.2
Min nTPM: 218.2
Sample A 218.2

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 300.1
Pig sample Sample description nTPM
Substantia nigra
nTPM: 300.1
Samples: 3

Max nTPM: 341.5
Min nTPM: 220.7
Sample A Female 341.5
Sample B Female 220.7
Sample C Male 338.1
Midbrain
nTPM: 274.3
Samples: 3

Max nTPM: 293.9
Min nTPM: 264.4
Sample B Female 264.4
Sample C Male 293.9
Sample D Male 264.5
Periaqueductal gray
nTPM: 237.3
Samples: 3

Max nTPM: 251.8
Min nTPM: 228.3
Sample B Female 231.7
Sample C Male 251.8
Sample D Male 228.3
Superior colliculi
nTPM: 293.9
Samples: 4

Max nTPM: 327.7
Min nTPM: 216.5
Sample A Female 314.5
Sample B Female 216.5
Sample C Male 327.7
Sample D Male 316.9

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 284.0
Mouse sample Sample description nTPM
Midbrain
nTPM: 284.0
Samples: 4

Max nTPM: 297.7
Min nTPM: 271.3
Sample A 271.3
Sample B 297.7
Sample C 287.6
Sample D 279.5

MIDBRAIN - Rat RNA-seq
Max subtype nTPMi 178.4
Rat sample Sample description nTPM
Midbrain
nTPM: 178.4
Samples: 4

Max nTPM: 184.9
Min nTPM: 168.0
Sample A 184.7
Sample A 184.9
Sample A 175.9
Sample A 168.0

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