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BETA
  • SUMMARY

  • TISSUE

  • BRAIN

  • SINGLE CELL

  • IMMUNE

  • SUBCELL

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  • BLOOD

  • CELL LINE

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  • EVOLUTION

  • SNAP25
EVOLUTIONARY AMYGDALA Show tissue menu
BRAIN74 EYE4 ENDOCRINE TISSUES5 RESPIRATORY SYSTEM6 PROXIMAL DIGESTIVE TRACT5 GASTROINTESTINAL TRACT11 LIVER & GALLBLADDER4 PANCREAS1 KIDNEY & URINARY BLADDER4 MALE REPRODUCTIVE SYSTEM11 BREAST & FEMALE REPRODUCTIVE SYSTEM10 MUSCLE & VASCULAR TISSUE12 CONNECTIVE & SOFT TISSUE15 SKIN4 BONE MARROW & LYMPHOID TISSUES7
Select an organ to show its tissues
AMYGDALA ANGULAR GYRUS ANNECTANT GYRUS ANTERIOR CINGULATE GYRUS BASAL GANGLIA CAUDATE NUCLEUS CAUDATE PUTAMEN CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS CINGULATE CORTEX CLAUSTRUM CORPUS CALLOSUM CUNEUS DORSAL HIPPOCAMPUS DORSAL ROOT GANGLION DORSAL SPINAL CORD ENTORHINAL CORTEX FRONTAL CORTEX
FUSIFORM GYRUS GENICULATE NUCLEUS GLOBUS PALLIDUS GYRUS RECTUS HABENULA HIPPOCAMPAL FORMATION HYPOTHALAMUS HYPOTHALAMUS, ANTERIOR HYPOTHALAMUS, POSTERIOR INFERIOR FRONTAL GYRUS INFERIOR OCCIPITAL GYRUS INFERIOR TEMPORAL GYRUS INSULAR CORTEX LATERAL THALAMIC NUCLEI MEDULLA OBLONGATA MIDBRAIN MIDDLE FRONTAL GYRUS MIDDLE TEMPORAL GYRUS MOTOR AND PREFRONTAL CORTEX
MOTOR CORTEX OCCIPITAL CORTEX OCCIPITAL GYRUS OLFACTORY BULB ORBITAL GYRUS PERIAQUEDUCTAL GRAY PONS POSTCENTRAL GYRUS POSTERIOR CINGULATE CORTEX POSTERIOR PARAHIPPOCAMPAL GYRUS POSTERIOR THALAMUS PRECENTRAL GYRUS PREFRONTAL CORTEX PREOPTIC AREA PUTAMEN RETROSPLENIAL AND CINGULATE CORTEX RETROSPLENIAL CORTEX SEPTAL AREA SEPTUM
SOMATOSENSORY CORTEX SPINAL CORD SUBICULUM SUBSTANTIA NIGRA SUPERIOR COLLICULI SUPERIOR FRONTAL GYRUS SUPERIOR PARIETAL LOBULE SUPERIOR TEMPORAL GYRUS SUPRAMARGINAL GYRUS TEMPORAL CORTEX THALAMUS VENTRAL FOREBRAIN VENTRAL HIPPOCAMPUS VENTRAL PALLIDUM VENTRAL SPINAL CORD VISUAL CORTEX WHITE MATTER
CORNEA HARDERIAN GLAND LENS RETINA
ADRENAL GLAND PARATHYROID GLAND PINEAL GLAND PITUITARY GLAND THYROID GLAND
BRONCHUS LARYNX LUNG NASOPHARYNX OLFACTORY EPITHELIUM TRACHEA
ESOPHAGUS LIP ORAL MUCOSA SALIVARY GLAND TONGUE
CECUM COLON DUODENUM ILEUM JEJUNUM RECTUM SMALL INTESTINE STOMACH STOMACH (LOWER) STOMACH (MIDDLE) STOMACH (UPPER)
GALLBLADDER LIVER LIVER (LOBE 1) LIVER (LOBE 4)
PANCREAS
KIDNEY KIDNEY (CORTEX) KIDNEY (MEDULLA) URINARY BLADDER
BULBOURETHRAL GLAND DUCTUS DEFERENS EPIDIDYMIS MALE PREPUTIAL GLAND PENIS PROSTATE PROSTATE (ANTERIOR) PROSTATE (VENTRAL) SEMINAL VESICLE TESTIS URETHRAL GLAND
BREAST CERVIX CLITORIS ENDOMETRIUM FALLOPIAN TUBE FEMALE PREPUTIAL GLAND OVARY PLACENTA UTERUS VAGINA
AORTA BLOOD VESSEL DIAPHRAGM HEART ATRIUM HEART MUSCLE HEART VALVE HEART WALL PERIPHERAL VASCULATURE SKELETAL MUSCLE SMOOTH MUSCLE SMOOTH MUSCLE (INTESTINE) SMOOTH MUSCLE (UTERUS)
ABDOMINAL ADIPOSE TISSUE ADIPOSE TISSUE BROWN ADIPOSE TISSUE DURA MATER EAR CANAL EAR CARTILAGE JOINT CARTILAGE MENINGES ORBITAL ADIPOSE TISSUE PERICARDIUM PERITONEUM PLEURA SUBCUTANEOUS ADIPOSE TISSUE SYNOVIAL TISSUE VAGUS NERVE
EYE LID SKIN SKIN (BACK) SKIN (GROIN)
APPENDIX BLOOD, PBMC BONE MARROW LYMPH NODE SPLEEN THYMUS TONSIL
HumanMacaqueMouseRatPig
PRIMARY MOUSE DATA
ANTIBODIES
AND
VALIDATION
Protein evolution
Brain
Evolutionary methods
AMYGDALA - Expression summary
Mouse brain, Intensity
Amygdalai

Protein expression in mouse brain using immunofluorescence is reported as mean fluorescence intensity.

36.184
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.

Scroll down to view mRNA expression data in more detail.

Consensus:845.4 nTPM
HPA Brain:686.4 nTPM
GTEx:845.4 nTPM
FANTOM5:1726.2 Scaled Tags Per Million
Macaque:1426.6 nTPM
Mouse:1369.4 nTPM
Rat:1091.3 nTPM
Pig:604.2 nTPM
BRAIN - SINGLE CELL RNA EXPRESSION
Explore single cell type data

AMYGDALA - Mouse brain profilei

Protein expression in mouse brain using immunofluorescence is reported as fluorescence intensity.

, antibody HPA001830
Amygdala mean intensity 36.184
intensityi

Protein expression in mouse brain using immunofluorescence is reported as mean fluorescence intensity.

FRONT BACK
Nucleus of the lateral olfactory tract 7.135
Basal medial amygdaloid nucleus 24.483
Basal lateral amygdala* -
Basal lateral amygdaloid nucleus 36.184
Cortical amygdala 11.798
Central amygdala 12.290
Medial amygdaloid nucleus 18.342

AMYGDALA - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

686.4
Sample id Sample description nTPM
Basal amygdala
nTPM: 667.4
2243 Female, age 91, right hemisphere 1103.9
2110 Male, age 80, left hemisphere 893.4
2685 Female, age 94, left hemisphere 802.3
1955 Male, age 76, both hemispheres 559.4
2827 Female, age 67, right hemisphere 367.8
2609 Male, age 75, right hemisphere 277.8
Central amygdala
nTPM: 458.1
2239 Male, age 80, left hemisphere 704.1
1905 Male, age 76, both hemispheres 571.9
2826 Female, age 94, left hemisphere 471.7
2701 Female, age 91, right hemisphere 361.2
2515 Male, age 75, right hemisphere 181.4
Corticomedial amygdala
nTPM: 686.4
2829 Male, age 80, left hemisphere 991.8
2429 Female, age 94, left hemisphere 839.3
2242 Female, age 91, right hemisphere 799.0
2535 Female, age 67, right hemisphere 643.5
2240 Male, age 76, both hemispheres 560.6
2428 Male, age 75, right hemisphere 284.1
Lateral amygdala
nTPM: 473.2
2534 Female, age 94, left hemisphere 859.0
1883 Male, age 76, both hemispheres 746.7
2256 Male, age 80, left hemisphere 453.8
2255 Female, age 91, right hemisphere 405.6
2516 Male, age 75, right hemisphere 190.2
2830 Female, age 67, right hemisphere 183.7

AMYGDALA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

845.4
GTEx sample id Sample description nTPM
Brain - Amygdala
Average nTPM: 845.4
Samples: 181

Max nTPM: 2436.4
Min nTPM: 82.0
Std nTPM: 526.0
Median nTPM: 749.1
GTEX-1JMQJ-0011-R4b-SM-EXUT8 50-59 years, male 2436.4
GTEX-WZTO-0011-R4A-SM-3NMC7 40-49 years, male 2393.5
GTEX-14JIY-0011-R4b-SM-5ZZV7 60-69 years, male 2278.8
GTEX-1IY9M-0011-R4a-SM-C1YQ2 60-69 years, male 2198.9
GTEX-1HCU6-0011-R4b-SM-ARU74 60-69 years, female 2111.5
GTEX-16YQH-0011-R4a-SM-7EPGI 30-39 years, male 1989.9
GTEX-14JG1-0011-R4b-SM-62LEB 40-49 years, male 1881.5
GTEX-111FC-0011-R4a-SM-GIN8K 60-69 years, male 1840.4
GTEX-S7SE-0011-R4A-SM-2XCDB 50-59 years, male 1764.2
GTEX-17HG3-0011-R4a-SM-7IGLL 30-39 years, female 1761.9
GTEX-1F75A-0011-R4a-SM-ARL8J 50-59 years, male 1715.5
GTEX-13VXU-0011-R4b-SM-5O9CI 50-59 years, male 1697.4
GTEX-1RQEC-0011-R4b-SM-F342C 60-69 years, male 1691.8
GTEX-13O3Q-0011-R4a-SM-5P9H2 50-59 years, male 1675.3
GTEX-1AX9I-0011-R4b-SM-7EPIB 60-69 years, male 1669.0
GTEX-1OJC4-0011-R4a-SM-F3K54 50-59 years, female 1667.0
GTEX-1P4AB-0011-R4b-SM-F2T9S 50-59 years, male 1666.4
GTEX-15RJE-0011-R4a-SM-H7OH4 40-49 years, male 1664.8
GTEX-1H3NZ-0011-R4a-SM-CL54T 60-69 years, male 1644.2
GTEX-17EVP-0011-R4a-SM-79OML 40-49 years, male 1635.7
GTEX-WVLH-0011-R4A-SM-3MJFS 50-59 years, male 1612.0
GTEX-TSE9-0011-R4A-SM-3DB7H 60-69 years, female 1611.0
GTEX-Q2AG-0011-R4A-SM-2HMKA 40-49 years, female 1603.3
GTEX-15EO6-0011-R4a-SM-7KUKZ 50-59 years, male 1548.7
GTEX-1F7RK-0011-R4b-SM-9QEI7 20-29 years, female 1535.4
GTEX-1LVAO-0011-R4a-SM-EXURO 60-69 years, male 1523.0
GTEX-1B8L1-0011-R4a-SM-7EWFJ 60-69 years, male 1467.2
GTEX-15DYW-0011-R4a-SM-6M46V 60-69 years, female 1411.0
GTEX-117XS-0011-R4b-SM-GJ3PR 60-69 years, male 1394.8
GTEX-1HFI6-0011-R4b-SM-A96RT 40-49 years, male 1377.3
GTEX-13O3O-0011-R4b-SM-5KM3F 60-69 years, female 1356.2
GTEX-11PRG-0011-R4a-SM-DNZZR 50-59 years, male 1344.0
GTEX-15SHU-0011-R4b-SM-7IGLC 40-49 years, female 1335.4
GTEX-11DYG-0011-R4b-SM-GJ3RG 60-69 years, male 1312.4
GTEX-1N2EF-0011-R4a-SM-F341F 60-69 years, male 1288.3
GTEX-XLM4-0011-R4B-SM-4AT5C 60-69 years, male 1282.5
GTEX-1F48J-0011-R4b-SM-9OSVX 50-59 years, female 1278.6
GTEX-1ICLZ-0011-R4a-SM-CMKHL 60-69 years, male 1274.6
GTEX-11NV4-0011-R4a-SM-GI4XC 60-69 years, male 1254.6
GTEX-14BMV-0011-R4a-SM-H6Q7P 50-59 years, male 1230.8
GTEX-YFC4-0011-R4a-SM-4RGLQ 40-49 years, female 1230.7
GTEX-12WSC-0011-R4a-SM-H6Q8M 50-59 years, male 1225.2
GTEX-131XH-0011-R4b-SM-5DUWB 50-59 years, male 1221.1
GTEX-ZVZQ-0011-R4b-SM-57WCZ 60-69 years, female 1213.5
GTEX-11DXY-0011-R4b-SM-GI4VR 60-69 years, male 1205.5
GTEX-ZAB4-0011-R4a-SM-4SOKB 40-49 years, male 1197.4
GTEX-1313W-0011-R4b-SM-5KLZV 50-59 years, female 1196.7
GTEX-11NUK-0011-R4a-SM-DO12B 50-59 years, male 1178.3
GTEX-1A3MX-0011-R4b-SM-7EWFK 60-69 years, male 1171.1
GTEX-11GS4-0011-R4a-SM-GJ3RJ 60-69 years, male 1171.0
GTEX-14ASI-0011-R4a-SM-69LQ4 60-69 years, male 1144.9
GTEX-11OF3-0011-R4a-SM-GJ3RB 60-69 years, male 1141.3
GTEX-1C6WA-0011-R4a-SM-9QEH2 60-69 years, male 1097.7
GTEX-QVJO-0011-R4A-SM-2S1QL 60-69 years, female 1097.6
GTEX-1HBPH-0011-R4a-SM-A96RX 40-49 years, female 1097.3
GTEX-1GMR8-0011-R4a-SM-9OSX1 50-59 years, female 1087.6
GTEX-12ZZY-0011-R4a-SM-GIN9F 60-69 years, male 1048.8
GTEX-1JMOU-0011-R4b-SM-EY5ZL 60-69 years, female 1039.1
GTEX-NPJ7-0011-R4a-SM-2I3GJ 60-69 years, female 1036.9
GTEX-1399T-0011-R4b-SM-5DUVX 60-69 years, male 1035.1
GTEX-15ER7-0011-R4a-SM-6M46S 20-29 years, female 997.4
GTEX-1GN73-0011-R4b-SM-9QEIK 60-69 years, male 990.9
GTEX-13X6K-0011-R4b-SM-5P9HO 60-69 years, female 949.5
GTEX-RNOR-0011-R4A-SM-3GAD3 50-59 years, female 948.5
GTEX-13X6I-0011-R4b-SM-5PNU9 60-69 years, male 945.0
GTEX-13X6J-0011-R4b-SM-5P9K4 50-59 years, male 932.7
GTEX-1EMGI-0011-R4b-SM-CJI2D 60-69 years, male 927.7
GTEX-131YS-0011-R4a-SM-5DUVL 60-69 years, female 927.4
GTEX-1O9I2-0011-R4b-SM-F3K4K 50-59 years, male 922.9
GTEX-145LS-0011-R4b-SM-5S2UT 60-69 years, female 919.5
GTEX-13N1W-0011-R4a-SM-5MR52 70-79 years, male 908.4
GTEX-1B996-0011-R4b-SM-9OSVO 60-69 years, male 899.4
GTEX-1KWVE-0011-R4a-SM-F3K5X 30-39 years, male 894.4
GTEX-QVUS-0011-R4A-SM-3GAE7 60-69 years, female 889.8
GTEX-13NYB-0011-R4b-SM-9QEGJ 40-49 years, male 887.7
GTEX-1GTWX-0011-R4a-SM-C1YQI 60-69 years, male 862.9
GTEX-1LSVX-0011-R4b-SM-EXURP 60-69 years, male 859.7
GTEX-WHSE-0011-R4A-SM-3P5ZN 20-29 years, male 857.8
GTEX-PVOW-0011-R4A-SM-H6Q8O 40-49 years, male 847.3
GTEX-13N2G-0011-R4b-SM-5MR54 60-69 years, male 821.1
GTEX-NL4W-0011-R4a-SM-2I5GZ 50-59 years, male 815.1
GTEX-1N2EE-0011-R4a-SM-EXOII 60-69 years, male 812.2
GTEX-1PWST-0011-R4a-SM-F2T9X 70-79 years, male 805.7
GTEX-12WSF-0011-R4b-SM-5HL88 70-79 years, male 802.8
GTEX-14C5O-0011-R4b-SM-G9ERF 60-69 years, male 800.6
GTEX-15CHQ-0011-R4a-SM-686ZX 60-69 years, male 795.1
GTEX-13112-0011-R4b-SM-5DUXL 50-59 years, male 785.7
GTEX-1LVA9-0011-R4a-SM-F2TA2 50-59 years, male 784.4
GTEX-14E7W-0011-R4b-SM-62LEA 70-79 years, male 784.1
GTEX-1PIIG-0011-R4a-SM-F2TAQ 30-39 years, male 774.8
GTEX-1H1ZS-0011-R4b-SM-CKZO7 70-79 years, male 749.1
GTEX-1PPGY-0011-R4a-SM-F3K4F 60-69 years, male 726.8
GTEX-12WSH-0011-R4a-SM-5GU6K 50-59 years, male 726.6
GTEX-17F97-0011-R4b-SM-7KFS2 50-59 years, male 724.4
GTEX-1E1VI-0011-R4b-SM-9QEHV 50-59 years, male 724.2
GTEX-X585-0011-R4B-SM-46MVH 50-59 years, male 722.3
GTEX-1GF9W-0011-R4a-SM-CE6RH 60-69 years, male 700.4
GTEX-1JMLX-0011-R4a-SM-EY5YJ 50-59 years, male 697.9
GTEX-1F6IF-0011-R4b-SM-CKZNJ 60-69 years, male 691.4
GTEX-14PN4-0011-R4a-SM-686ZT 50-59 years, male 690.5
GTEX-14PJM-0011-R4a-SM-5YYAS 50-59 years, female 680.8
GTEX-1I1GR-0011-R4a-SM-CMKHC 60-69 years, male 680.8
GTEX-14ABY-0011-R4b-SM-5S2VN 50-59 years, male 658.6
GTEX-ZAK1-0011-R4a-SM-6AJBK 50-59 years, female 650.9
GTEX-14DAQ-0011-R4a-SM-5YYAI 60-69 years, female 650.7
GTEX-147F4-0011-R4b-SM-GJ3R4 50-59 years, male 642.8
GTEX-17EVQ-0011-R4b-SM-7LT94 70-79 years, male 632.8
GTEX-1RDX4-0011-R4b-SM-F3K43 50-59 years, female 626.2
GTEX-13SLX-0011-R4a-SM-5O9BJ 50-59 years, female 618.5
GTEX-14JFF-0011-R4a-SM-5ZZV5 60-69 years, male 615.0
GTEX-1H3O1-0011-R4b-SM-A9SKE 60-69 years, male 614.5
GTEX-13RTJ-0011-R4b-SM-5PNX1 60-69 years, male 611.9
GTEX-12WSD-0011-R4b-SM-5LZUA 60-69 years, female 611.5
GTEX-14PQA-0011-R4b-SM-6AJBU 50-59 years, female 598.8
GTEX-1QMI2-0011-R4b-SM-F3K4R 60-69 years, male 588.1
GTEX-1JJ6O-0011-R4a-SM-EY5YM 60-69 years, male 580.7
GTEX-13FHO-0011-R4b-SM-H6611 60-69 years, male 580.5
GTEX-1CB4G-0011-R4b-SM-CJI28 60-69 years, male 557.6
GTEX-1POEN-0011-R4b-SM-F3K4O 30-39 years, female 554.8
GTEX-1MJK2-0011-R4a-SM-F3426 50-59 years, male 527.5
GTEX-11GSO-0011-R4b-SM-GJ3R8 60-69 years, male 517.0
GTEX-1LH75-0011-R4a-SM-F2TAM 50-59 years, female 517.0
GTEX-13OW5-0011-R4b-SM-5L3HS 60-69 years, male 503.3
GTEX-1HBPI-0011-R4a-SM-CJI3K 50-59 years, male 495.8
GTEX-11ZU8-0011-R4a-SM-5BC6Y 60-69 years, male 474.7
GTEX-11ONC-0011-R4b-SM-DO93H 60-69 years, male 468.4
GTEX-13CZV-0011-R4b-SM-5J2NY 60-69 years, male 454.0
GTEX-1HB9E-0011-R4b-SM-ARZLS 50-59 years, male 451.2
GTEX-15DCD-0011-R4a-SM-69LPB 70-79 years, female 440.2
GTEX-1JMQK-0011-R4a-SM-G8LLQ 60-69 years, male 437.3
GTEX-N7MT-0011-R4a-SM-2I3G9 60-69 years, female 437.2
GTEX-1H1CY-0011-R4b-SM-CJI3G 60-69 years, female 428.8
GTEX-1J1OQ-0011-R4a-SM-D4P2A 40-49 years, female 421.3
GTEX-13OVH-0011-R4a-SM-5KM3W 70-79 years, male 406.3
GTEX-14BIM-0011-R4b-SM-5S2RK 60-69 years, female 399.0
GTEX-1117F-0011-R4b-SM-GI4VM 60-69 years, female 377.8
GTEX-X4XX-0011-R4B-SM-46MWL 60-69 years, male 377.8
GTEX-1C6VR-0011-R4b-SM-9QEGZ 60-69 years, male 372.7
GTEX-1QP6S-0011-R4b-SM-F33ZY 40-49 years, male 372.4
GTEX-12ZZW-0011-R4a-SM-5DUX9 50-59 years, male 371.1
GTEX-1LKK1-0011-R4b-SM-EY5YA 50-59 years, female 367.1
GTEX-OHPN-0011-R4A-SM-2I5FD 60-69 years, female 362.0
GTEX-13QIC-0011-R4a-SM-5PNX8 60-69 years, female 357.2
GTEX-13PVQ-0011-R4a-SM-5O9CT 50-59 years, male 354.4
GTEX-1GZ4I-0011-R4a-SM-9QEI9 50-59 years, male 352.7
GTEX-ZZPT-0011-R4a-SM-GPRX4 50-59 years, male 351.6
GTEX-11TTK-0011-R4a-SM-DNZZU 60-69 years, female 351.4
GTEX-1N2DW-0011-R4b-SM-EZ6MD 50-59 years, male 348.5
GTEX-13OW6-0011-R4a-SM-5O9DX 50-59 years, male 343.4
GTEX-139T8-0011-R4a-SM-5HL54 60-69 years, male 338.9
GTEX-147GR-0011-R4a-SM-5S2V2 60-69 years, male 332.0
GTEX-13FLV-0011-R4a-SM-5LZYU 50-59 years, male 325.8
GTEX-1J8Q2-0011-R4a-SM-ADEHA 60-69 years, male 306.7
GTEX-NPJ8-0011-R4a-SM-2HML3 40-49 years, male 302.9
GTEX-12ZZZ-0011-R4b-SM-5DUV7 60-69 years, male 296.5
GTEX-1NV8Z-0011-R4b-SM-G8LMZ 60-69 years, male 296.4
GTEX-1H1DG-0011-R4a-SM-CE6RQ 70-79 years, male 296.3
GTEX-13OVJ-0011-R4b-SM-5P9H5 50-59 years, female 288.0
GTEX-1EX96-0011-R4a-SM-ARU82 50-59 years, male 283.1
GTEX-13OW8-0011-R4a-SM-9WG6V 60-69 years, male 278.4
GTEX-13SLW-0011-R4b-SM-5S2W2 70-79 years, male 273.0
GTEX-13QJC-0011-R4a-SM-H65ZP 60-69 years, female 267.1
GTEX-13OVL-0011-R4b-SM-5L3HV 50-59 years, male 253.2
GTEX-144GL-0011-R4a-SM-5PNUI 50-59 years, male 251.0
GTEX-1LB8K-0011-R4b-SM-F6487 50-59 years, male 245.5
GTEX-1445S-0011-R4a-SM-5PNWN 60-69 years, male 231.9
GTEX-145LU-0011-R4b-SM-5P9K1 50-59 years, male 222.0
GTEX-13JVG-0011-R4a-SM-5MR4C 60-69 years, male 218.1
GTEX-13NYS-0011-R4b-SM-5MR3O 60-69 years, male 213.6
GTEX-13PLJ-0011-R4b-SM-GJ3R6 60-69 years, female 184.3
GTEX-13OW7-0011-R4b-SM-5O9CX 50-59 years, male 173.9
GTEX-1H23P-0011-R4b-SM-CL54R 60-69 years, male 173.0
GTEX-12WSA-0011-R4a-SM-57WB7 60-69 years, male 162.7
GTEX-1J8EW-0011-R4b-SM-ARU89 60-69 years, female 157.0
GTEX-ZYY3-0011-R4a-SM-GQ1CY 60-69 years, female 154.9
GTEX-1R46S-0011-R4b-SM-F2TBF 60-69 years, female 152.4
GTEX-11ZVC-0011-R4a-SM-5BC6Z 50-59 years, female 148.2
GTEX-11ZTS-0011-R4b-SM-GINAQ 60-69 years, female 123.7
GTEX-1JN1M-0011-R4b-SM-F6494 60-69 years, female 113.9
GTEX-1RLM8-0011-R4a-SM-F2TBL 50-59 years, male 108.5
GTEX-1RQED-0011-R4b-SM-F2I2X 60-69 years, male 82.0
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AMYGDALA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

1726.2
FANTOM5 sample id Sample description Scaled Tags Per Million
Amygdala
Scaled Tags Per Million: 1726.2
FF:10151-102I7 76 years, female 1726.2

AMYGDALA - Macaque RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

1426.6
Macaque sample Sample description nTPM
Amygdala
nTPM: 1426.6
Samples: 2

Max nTPM: 1752.7
Min nTPM: 1100.5
Sample A 1100.5
Sample B 1752.7

AMYGDALA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

604.2
Pig sample Sample description nTPM
Amygdala
nTPM: 604.3
Samples: 4

Max nTPM: 999.4
Min nTPM: 418.7
Sample A Female 999.4
Sample B Female 418.7
Sample C Male 447.1
Sample D Male 551.8

AMYGDALA - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

1369.4
Mouse sample Sample description nTPM
Amygdala
nTPM: 1369.4
Samples: 4

Max nTPM: 1619.4
Min nTPM: 1239.6
Sample A 1319.4
Sample B 1299.3
Sample C 1619.4
Sample D 1239.6

AMYGDALA - Rat RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

1091.3
Rat sample Sample description nTPM
Amygdala
nTPM: 1091.3
Samples: 4

Max nTPM: 1207.9
Min nTPM: 873.0
Sample A 1168.2
Sample A 1207.9
Sample A 1116.1
Sample A 873.0

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