MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:2.5 nTPM
HPA Brain:41.2 nTPM
GTEx:2.5 nTPM
FANTOM5:30.5 Scaled Tags Per Million
Pig:35.3 nTPM
Mouse:14.8 nTPM
Allen mouse:1.0 Expression energy
BRAIN - SINGLE CELL RNA EXPRESSION

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 41.2
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 35.8
2828 Female, age 72, unknown 42.3
2586 Male, age 75, left hemisphere 38.4
1830 Male, age 51, unknown 38.2
1833 Male, age 53, unknown 37.8
2666 Male, age 74, left hemisphere 37.1
1870 Female, age 42, unknown 35.9
2019 Male, age 18, unknown 34.0
1827 Male, age 72, unknown 32.5
2411 Female, age 72, unknown 31.3
2219 Male, age 76, both hemispheres 30.9
Dorsal raphe nucleus
nTPM: 35.0
2016 Female, age 72, unknown 41.7
1828 Male, age 53, unknown 37.1
2750 Male, age 76, both hemispheres 35.1
2047 Male, age 72, unknown 34.1
2298 Female, age 72, unknown 26.8
Inferior colliculus
nTPM: 33.6
1848 Female, age 42, unknown 36.1
2849 Male, age 72, unknown 35.1
1890 Male, age 53, unknown 32.9
2097 Female, age 72, unknown 30.2
Median raphe nucleus
nTPM: 26.9
2220 Male, age 76, midline 26.9
Periaquaductal grey, anterior
nTPM: 28.6
1947 Male, age 18, unknown 29.4
2502 Female, age 75, unknown 28.9
1795 Male, age 51, unknown 27.6
Periaquaductal grey, dorsal
nTPM: 34.6
1840 Male, age 53, unknown 37.0
2850 Male, age 76, both hemispheres 36.3
1831 Male, age 72, unknown 32.9
2464 Female, age 72, unknown 32.4
Periaquaductal grey, lateral
nTPM: 35.4
2140 Male, age 76, both hemispheres 42.4
2053 Male, age 18, unknown 35.5
2272 Male, age 74, both hemispheres 28.4
Pretectal area
nTPM: 31.4
2316 Male, age 76, right hemisphere 42.0
1815 Male, age 53, unknown 34.6
1817 Female, age 42, unknown 34.0
2825 Male, age 18, unknown 32.4
2667 Female, age 75, unknown 31.7
2224 Female, age 72, unknown 31.3
2007 Male, age 72, unknown 29.5
1944 Female, age 72, unknown 29.3
2273 Male, age 74, both hemispheres 28.3
2407 Male, age 75, both hemispheres 28.0
1816 Male, age 51, unknown 24.4
Red nucleus
nTPM: 41.2
2823 Male, age 76, right hemisphere 45.4
1954 Female, age 42, unknown 45.3
1865 Male, age 51, unknown 44.9
2503 Female, age 72, unknown 44.1
2227 Male, age 72, unknown 43.2
1904 Male, age 53, unknown 43.1
2588 Male, age 74, left hemisphere 42.0
2769 Male, age 72, unknown 41.7
1821 Female, age 72, unknown 40.5
2725 Female, age 75, unknown 36.8
2785 Male, age 18, unknown 33.9
2584 Male, age 75, left hemisphere 33.6
Substantia nigra
nTPM: 35.4
2699 Male, age 18, unknown 51.7
2665 Male, age 74, both hemispheres 40.7
2409 Female, age 72, unknown 36.8
1851 Male, age 51, unknown 35.7
2590 Female, age 75, unknown 35.7
2583 Male, age 75, right hemisphere 33.1
1916 Female, age 42, unknown 32.6
1889 Female, age 72, unknown 31.8
2241 Male, age 72, unknown 28.7
1941 Male, age 53, unknown 27.1
Superior colliculus
nTPM: 34.4
1995 Male, age 72, unknown 45.4
1913 Female, age 42, unknown 40.9
1839 Male, age 51, unknown 36.5
2668 Female, age 75, unknown 36.1
1895 Male, age 76, right hemisphere 35.7
2587 Male, age 74, left hemisphere 33.2
2664 Male, age 75, both hemispheres 32.6
2087 Female, age 72, unknown 28.9
1796 Male, age 53, unknown 28.3
2261 Male, age 18, unknown 26.8
Ventral tegmental area
nTPM: 35.4
2021 Male, age 53, unknown 39.3
1942 Male, age 51, unknown 36.2
2223 Female, age 72, unknown 35.4
2410 Female, age 72, unknown 34.6
2218 Male, age 76, both hemispheres 34.4
1915 Female, age 42, unknown 32.7

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 2.5
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 2.5
Samples: 183

Max nTPM: 5.5
Min nTPM: 0.0
Std nTPM: 1.0
Median nTPM: 2.4
GTEX-UTHO-0011-R2A-SM-3GIKC 60-69 years, male 5.5
GTEX-11UD1-0011-R2b-SM-5BC6O 40-49 years, female 5.4
GTEX-1H23P-0011-R2a-SM-CKZP3 60-69 years, male 5.1
GTEX-11TTK-0011-R2b-SM-GJ3PU 60-69 years, female 4.9
GTEX-15EO6-0011-R2a-SM-6M46R 50-59 years, male 4.9
GTEX-ZYY3-0011-R2a-SM-GNTB2 60-69 years, female 4.9
GTEX-XMD1-0011-R2B-SM-4AT5N 60-69 years, male 4.8
GTEX-OHPN-0011-R2A-SM-2I5FB 60-69 years, female 4.6
GTEX-16GPK-0011-R2a-SM-GRR1F 60-69 years, male 4.5
GTEX-1J1OQ-0011-R2b-SM-ARU88 40-49 years, female 4.5
GTEX-12WSH-0011-R2a-SM-5GU68 50-59 years, male 4.3
Show allShow less

MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 30.5
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 30.5
FF:10158-103A5 76 years, female 30.5

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 35.3
Pig sample Sample description nTPM
Substantia nigra
nTPM: 35.3
Samples: 4

Max nTPM: 40.7
Min nTPM: 29.9
Sample A Female 34.0
Sample B Female 36.4
Sample C Male 29.9
Sample D Male 40.7
Midbrain
nTPM: 33.5
Samples: 4

Max nTPM: 49.7
Min nTPM: 22.1
Sample A Female 49.7
Sample B Female 32.8
Sample C Male 29.2
Sample D Male 22.1
Periaqueductal gray
nTPM: 27.7
Samples: 3

Max nTPM: 30.9
Min nTPM: 24.3
Sample B Female 30.9
Sample C Male 27.9
Sample D Male 24.3
Superior colliculi
nTPM: 30.8
Samples: 4

Max nTPM: 33.0
Min nTPM: 29.3
Sample A Female 31.2
Sample B Female 33.0
Sample C Male 29.5
Sample D Male 29.3

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 14.8
Mouse sample Sample description nTPM
Midbrain
nTPM: 14.9
Samples: 4

Max nTPM: 16.4
Min nTPM: 11.3
Sample A Male 15.5
Sample B Male 11.3
Sample C Female 16.4
Sample D Female 16.2

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 1.0
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 1.0
67767452 Antisense, RP_040916_01_H12, Mouse strain C57BL/6J (56 days, male) 2.0
70300499 Antisense, RP_050607_01_F08, Mouse strain C57BL/6J (56 days, male) 0.0

Contact

The Project

The Human Protein Atlas

KAW logo The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.

contact@proteinatlas.org
GCBR logo Elixir core logo SciLifeLab logo Uppsala university logo KI logo KTH logo