MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:70.3 nTPM
HPA Brain:147.1 nTPM
GTEx:70.3 nTPM
FANTOM5:171.3 Scaled Tags Per Million
Pig:78.0 nTPM
Mouse:113.9 nTPM
Allen mouse:0.3 Expression energy
BRAIN - SINGLE CELL RNA EXPRESSION

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 147.1
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 125.8
2586 Male, age 75, left hemisphere 155.1
2666 Male, age 74, left hemisphere 140.0
2219 Male, age 76, both hemispheres 130.2
2828 Female, age 72, unknown 130.1
1827 Male, age 72, unknown 125.3
1833 Male, age 53, unknown 122.9
1870 Female, age 42, unknown 121.4
2019 Male, age 18, unknown 113.7
2411 Female, age 72, unknown 113.6
1830 Male, age 51, unknown 105.5
Dorsal raphe nucleus
nTPM: 129.7
2298 Female, age 72, unknown 135.6
2047 Male, age 72, unknown 134.8
1828 Male, age 53, unknown 131.7
2016 Female, age 72, unknown 129.6
2750 Male, age 76, both hemispheres 116.7
Inferior colliculus
nTPM: 124.5
2849 Male, age 72, unknown 132.6
2097 Female, age 72, unknown 129.0
1848 Female, age 42, unknown 118.7
1890 Male, age 53, unknown 117.6
Median raphe nucleus
nTPM: 147.1
2220 Male, age 76, midline 147.1
Periaquaductal grey, anterior
nTPM: 124.3
2502 Female, age 75, unknown 131.8
1795 Male, age 51, unknown 126.7
1947 Male, age 18, unknown 114.3
Periaquaductal grey, dorsal
nTPM: 142.8
2850 Male, age 76, both hemispheres 168.0
1840 Male, age 53, unknown 149.1
1831 Male, age 72, unknown 128.6
2464 Female, age 72, unknown 125.3
Periaquaductal grey, lateral
nTPM: 118.0
2053 Male, age 18, unknown 128.1
2140 Male, age 76, both hemispheres 126.6
2272 Male, age 74, both hemispheres 99.3
Pretectal area
nTPM: 137.3
1816 Male, age 51, unknown 182.6
1944 Female, age 72, unknown 171.7
1817 Female, age 42, unknown 163.7
1815 Male, age 53, unknown 159.1
2007 Male, age 72, unknown 138.4
2667 Female, age 75, unknown 136.3
2224 Female, age 72, unknown 131.2
2825 Male, age 18, unknown 122.0
2407 Male, age 75, both hemispheres 112.3
2273 Male, age 74, both hemispheres 98.1
2316 Male, age 76, right hemisphere 95.0
Red nucleus
nTPM: 112.9
1821 Female, age 72, unknown 125.8
2588 Male, age 74, left hemisphere 120.1
2785 Male, age 18, unknown 118.3
2503 Female, age 72, unknown 115.5
2725 Female, age 75, unknown 115.1
1865 Male, age 51, unknown 113.2
2584 Male, age 75, left hemisphere 113.1
2823 Male, age 76, right hemisphere 113.0
1954 Female, age 42, unknown 111.7
1904 Male, age 53, unknown 110.4
2769 Male, age 72, unknown 100.2
2227 Male, age 72, unknown 98.6
Substantia nigra
nTPM: 129.1
2665 Male, age 74, both hemispheres 146.8
2241 Male, age 72, unknown 146.4
1889 Female, age 72, unknown 140.2
2699 Male, age 18, unknown 136.0
1916 Female, age 42, unknown 130.3
1851 Male, age 51, unknown 124.6
2409 Female, age 72, unknown 122.9
2583 Male, age 75, right hemisphere 118.7
1941 Male, age 53, unknown 114.2
2590 Female, age 75, unknown 110.8
Superior colliculus
nTPM: 131.7
2087 Female, age 72, unknown 147.4
1995 Male, age 72, unknown 142.1
2261 Male, age 18, unknown 142.1
2668 Female, age 75, unknown 138.2
2587 Male, age 74, left hemisphere 135.8
1796 Male, age 53, unknown 134.0
2664 Male, age 75, both hemispheres 131.3
1913 Female, age 42, unknown 123.5
1839 Male, age 51, unknown 112.7
1895 Male, age 76, right hemisphere 109.5
Ventral tegmental area
nTPM: 128.1
2218 Male, age 76, both hemispheres 136.5
2410 Female, age 72, unknown 133.2
1942 Male, age 51, unknown 130.6
2223 Female, age 72, unknown 125.0
2021 Male, age 53, unknown 122.2
1915 Female, age 42, unknown 121.4

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 70.3
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 70.3
Samples: 183

Max nTPM: 120.2
Min nTPM: 43.1
Std nTPM: 15.5
Median nTPM: 67.6
GTEX-1GZ2Q-0011-R2b-SM-9OSWO 40-49 years, male 120.2
GTEX-1192X-0011-R2b-SM-GI4VV 50-59 years, male 120.1
GTEX-1O9I2-0011-R2b-SM-F3K53 50-59 years, male 120.1
GTEX-1H1ZS-0011-R2b-SM-CL54Q 70-79 years, male 115.4
GTEX-1117F-0011-R2b-SM-GI4VL 60-69 years, female 111.7
GTEX-13SLW-0011-R2b-SM-5O9C6 70-79 years, male 111.6
GTEX-13CF2-0011-R2a-SM-5L3DC 60-69 years, male 108.4
GTEX-1H3O1-0011-R2b-SM-CKZOT 60-69 years, male 104.7
GTEX-1RQEC-0011-R2b-SM-EY5ZT 60-69 years, male 102.6
GTEX-1C6VR-0011-R2a-SM-7RHGZ 60-69 years, male 102.5
GTEX-11TTK-0011-R2b-SM-GJ3PU 60-69 years, female 101.1
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 171.3
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 171.3
FF:10158-103A5 76 years, female 171.3

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 78.0
Pig sample Sample description nTPM
Substantia nigra
nTPM: 70.4
Samples: 4

Max nTPM: 80.2
Min nTPM: 60.3
Sample A Female 76.3
Sample B Female 60.3
Sample C Male 80.2
Sample D Male 64.6
Midbrain
nTPM: 78.0
Samples: 4

Max nTPM: 95.6
Min nTPM: 65.8
Sample A Female 95.6
Sample B Female 65.8
Sample C Male 81.7
Sample D Male 69.0
Periaqueductal gray
nTPM: 68.4
Samples: 3

Max nTPM: 73.5
Min nTPM: 65.0
Sample B Female 66.8
Sample C Male 73.5
Sample D Male 65.0
Superior colliculi
nTPM: 70.2
Samples: 4

Max nTPM: 75.4
Min nTPM: 65.6
Sample A Female 67.5
Sample B Female 65.6
Sample C Male 75.4
Sample D Male 72.3

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 113.9
Mouse sample Sample description nTPM
Midbrain
nTPM: 113.8
Samples: 4

Max nTPM: 115.3
Min nTPM: 112.0
Sample A Male 112.0
Sample B Male 115.2
Sample C Female 112.8
Sample D Female 115.3

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 0.3
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.3
71378408 Antisense, RP_050510_03_F04, Mouse strain C57BL/6J (56 days, male) 0.3

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