On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.
No data
RNA expressioni
A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
Consensus:
70.3
nTPM
HPA Brain:
148.3
nTPM
GTEx:
70.3
nTPM
FANTOM5:
171.3
Scaled Tags Per Million
Macaque:
87.5
nTPM
Mouse:
115.7
nTPM
Rat:
67.8
nTPM
Pig:
72.6
nTPM
MIDBRAIN - SINGLE NUCLEI RNA EXPRESSIONi
RNA expression in the single nuclei cluster types identified in this brain region visualized by a UMAP plot (top) and a bar chart (to the right).
- UMAP PLOT visualizes the cells in each cluster; where each dot corresponds to a cell. For each individual cell, mouseover reveals read count and which cluster the cell belongs to. Hovering over a cluster name will highlight the corresponding cluster in the bar chart two the right. There are 2 options for color schemes: 1) cell type color, which is based on cell type groups used in the Single cell type part of the Single cell resource and 2) cluster color, which assigns a unique color to each cluster. There are 3 options for cell intensities: 1) Intensity, which color the individual cells according to % of max (log2(read_count+1)/log2(max(read_count)+1)*100) in five different bins (<1%,<25%,<50%,<75%,≥75%) 2) Interval, which color the individual cells according to fixed interval of read count (0,1,2-4,5-9,>10) 3) Hexagon, which color the hexagon on average read count of all cells inside the hexagon
- The BAR CHART shows RNA expression (nTPM) in each cluster type. Hovering over the cluster name reveals nTPM value and number of included cells. Hovering over a bar highlights the corresponding cluster in the UMAP plot above. Color-coding can be toggled on the top of the page, between 2 options: 1) cell type color, which is based on cell type groups used in the Single cell type part of the Single cell resource and 2) cluster color, which assigns a unique color to each cluster.
SINGLE NUCLEI BRAIN - MIDBRAIN, NEURONSi
RNA expression in the single nuclei cluster types identified in this brain region visualized by a UMAP plot (top) and a bar chart (to the right).
- UMAP PLOT visualizes the cells in each cluster; where each dot corresponds to a cell. For each individual cell, mouseover reveals read count and which cluster the cell belongs to. Hovering over a cluster name will highlight the corresponding cluster in the bar chart two the right. There are 2 options for color schemes: 1) cell type color, which is based on cell type groups used in the Single cell type part of the Single cell resource and 2) cluster color, which assigns a unique color to each cluster. There are 3 options for cell intensities: 1) Intensity, which color the individual cells according to % of max (log2(read_count+1)/log2(max(read_count)+1)*100) in five different bins (<1%,<25%,<50%,<75%,≥75%) 2) Interval, which color the individual cells according to fixed interval of read count (0,1,2-4,5-9,>10) 3) Hexagon, which color the hexagon on average read count of all cells inside the hexagon
- The BAR CHART shows RNA expression (nTPM) in each cluster type. Hovering over the cluster name reveals nTPM value and number of included cells. Hovering over a bar highlights the corresponding cluster in the UMAP plot above. Color-coding can be toggled on the top of the page, between 2 options: 1) cell type color, which is based on cell type groups used in the Single cell type part of the Single cell resource and 2) cluster color, which assigns a unique color to each cluster.
Cell type color
Cluster color
Colored according to cell type group
Colored according to clusters
Read count filter:0
Cluster
Cell type
Expression (nCPM)
c-1
Inhibitory (GAD1/2) RORB+ K
c-2
Excitatory (VGLUT1) ETV1+ Z...
c-3
Inhibitory (GAD1/2) RORB+ K
c-4
Inhibitory (GAD1/2) RORB+ K
c-5
Unassigned
c-6
Tectum Excitatory (VGLUT2)
c-7
Inhibitory (GAD1/2)
c-8
Inhibitory (GAD1/2) TFAP2B+
c-9
Excitatory (VGLUT2)
c-10
Excitatory (VGLUT2)
c-11
Tectum Inhibitory (GAD1/2)
c-12
Excitatory (VGLUT2) TFAP2B+
c-13
Excitatory (VGLUT2)
c-14
Excitatory (VGLUT2)
c-15
Tectum Excitatory (VGLUT2)
c-16
Excitatory (VGLUT2)
c-17
Inhibitory (GAD1/2)
c-18
Excitatory (VGLUT2)
c-19
Inhibitory (GAD1/2)
c-20
Inhibitory (GAD1/2)
c-21
Excitatory (VGLUT2)
c-22
Excitatory (VGLUT2)
c-23
Inhibitory (GAD1/2) TFAP2B+
c-24
Inhibitory (GAD1/2)
c-25
Excitatory (VGLUT2) CRH+ CA...
c-26
Inhibitory (GAD1/2) SST+
c-27
Inhibitory (GAD1/2) NPY+
c-28
Inhibitory (GAD1/2) RORB+ K
c-29
Excitatory (VGLUT2) TFAP2B+
c-30
Excitatory (VGLUT2)
c-31
Dopaminergic TH+ LMX1A+ SLC...
c-32
Inhibitory (GAD1/2) PVALB+
c-33
Tegmentum Excitatory (VGLUT...
c-34
Excitatory (VGLUT2) LMX1A+
c-35
Tegmentum Inhibitory (GAD2)...
c-36
TPH2+
c-37
Inhibitory (GAD1/2) CXCL14+
c-38
Excitatory (VGLUT1) SATB2+
c-39
Inhibitory (GAD1/2) RORB+ K
c-40
Excitatory (VGLUT2) MEIS2+
c-41
Inhibitory (GAD1/2) TFAP2B+
c-42
Excitatory (VGLUT2)
c-43
Excitatory (VGLUT1)
c-44
SN Monoaminergic Inhibitory...
c-45
Inhibitory (GAD1/2)
c-46
Excitatory (VGLUT1) GRP+
c-47
Inhibitory (GAD1/2) PVALB+ ...
c-48
Excitatory (VGLUT1)
c-49
Inhibitory (GAD1/2) LAMP5+
c-50
Excitatory (VGLUT2) KIT+
c-51
Excitatory (VGLUT1) SLC5A7+
c-52
Inhibitory (GAD1/2) NOS1+ G...
Show allShow less
This data was generated by Siletti K et al. (2023), re-processed by HPA (see methods) and simplified for global overview
SINGLE NUCLEI BRAIN - MIDBRAIN, NON-NEURONALi
RNA expression in the single nuclei cluster types identified in this brain region visualized by a UMAP plot (top) and a bar chart (to the right).
- UMAP PLOT visualizes the cells in each cluster; where each dot corresponds to a cell. For each individual cell, mouseover reveals read count and which cluster the cell belongs to. Hovering over a cluster name will highlight the corresponding cluster in the bar chart two the right. There are 2 options for color schemes: 1) cell type color, which is based on cell type groups used in the Single cell type part of the Single cell resource and 2) cluster color, which assigns a unique color to each cluster. There are 3 options for cell intensities: 1) Intensity, which color the individual cells according to % of max (log2(read_count+1)/log2(max(read_count)+1)*100) in five different bins (<1%,<25%,<50%,<75%,≥75%) 2) Interval, which color the individual cells according to fixed interval of read count (0,1,2-4,5-9,>10) 3) Hexagon, which color the hexagon on average read count of all cells inside the hexagon
- The BAR CHART shows RNA expression (nTPM) in each cluster type. Hovering over the cluster name reveals nTPM value and number of included cells. Hovering over a bar highlights the corresponding cluster in the UMAP plot above. Color-coding can be toggled on the top of the page, between 2 options: 1) cell type color, which is based on cell type groups used in the Single cell type part of the Single cell resource and 2) cluster color, which assigns a unique color to each cluster.
Cell type color
Cluster color
Colored according to cell type group
Colored according to clusters
Read count filter:0
Cluster
Cell type
Expression (nCPM)
c-1
Oligodendrocytes
c-2
Oligodendrocytes
c-3
Microglia
c-4
Oligodendrocytes
c-5
Oligodendrocyte progenitor ...
c-6
Astrocytes
c-7
Oligodendrocytes
c-8
Oligodendrocytes
c-9
Oligodendrocytes
c-10
Oligodendrocytes
c-11
Oligodendrocytes
c-12
Astrocytes
c-13
Fibroblasts
c-14
NK-cells & T-cells
c-15
Macrophages
c-16
Ependymal cells
c-17
Capillary endothelial cells
c-18
Pericytes
c-19
Oligodendrocyte progenitor ...
c-20
Immature oligodendrocytes
c-21
Vascular smooth muscle cell
c-22
Oligodendrocyte progenitor ...
c-23
B-cells & Monocytes doublet
c-24
Arterial endothelial cells
c-25
CD44+ Mural cells
c-26
Bergmann glia
c-27
Oligodendrocytes & Lymphocy
c-28
Macrophages & Monocytes
Show allShow less
This data was generated by Siletti K et al. (2023), re-processed by HPA (see methods) and simplified for global overview
MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
148.3
Sample id
Sample description
nTPM
Cuneiform nucleus nTPM: 126.3
2586
Male, age 75, left hemisphere
155.1
2666
Male, age 74, left hemisphere
140.5
2219
Male, age 76, both hemispheres
131.3
2828
Female, age 72, unknown
130.6
1827
Male, age 72, unknown
125.9
1833
Male, age 53, unknown
123.5
1870
Female, age 42, unknown
121.8
2019
Male, age 18, unknown
114.2
2411
Female, age 72, unknown
114.0
1830
Male, age 51, unknown
105.9
Dorsal raphe nucleus nTPM: 130.3
2298
Female, age 72, unknown
136.1
2047
Male, age 72, unknown
135.4
1828
Male, age 53, unknown
132.3
2016
Female, age 72, unknown
130.1
2750
Male, age 76, both hemispheres
117.7
Inferior colliculus nTPM: 125.0
2849
Male, age 72, unknown
133.2
2097
Female, age 72, unknown
129.5
1848
Female, age 42, unknown
119.1
1890
Male, age 53, unknown
118.1
Median raphe nucleus nTPM: 148.3
2220
Male, age 76, midline
148.3
Periaquaductal grey, anterior nTPM: 124.8
2502
Female, age 75, unknown
132.4
1795
Male, age 51, unknown
127.3
1947
Male, age 18, unknown
114.8
Periaquaductal grey, dorsal nTPM: 143.5
2850
Male, age 76, both hemispheres
169.5
1840
Male, age 53, unknown
149.7
1831
Male, age 72, unknown
129.2
2464
Female, age 72, unknown
125.8
Periaquaductal grey, lateral nTPM: 118.7
2053
Male, age 18, unknown
128.6
2140
Male, age 76, both hemispheres
127.8
2272
Male, age 74, both hemispheres
99.7
Pretectal area nTPM: 137.9
1816
Male, age 51, unknown
183.3
1944
Female, age 72, unknown
172.4
1817
Female, age 42, unknown
164.3
1815
Male, age 53, unknown
159.7
2007
Male, age 72, unknown
139.0
2667
Female, age 75, unknown
136.8
2224
Female, age 72, unknown
131.8
2825
Male, age 18, unknown
122.5
2407
Male, age 75, both hemispheres
112.3
2273
Male, age 74, both hemispheres
98.5
2316
Male, age 76, right hemisphere
95.8
Red nucleus nTPM: 113.4
1821
Female, age 72, unknown
126.3
2588
Male, age 74, left hemisphere
120.5
2785
Male, age 18, unknown
118.8
2503
Female, age 72, unknown
115.9
2725
Female, age 75, unknown
115.6
2823
Male, age 76, right hemisphere
114.0
1865
Male, age 51, unknown
113.6
2584
Male, age 75, left hemisphere
113.1
1954
Female, age 42, unknown
112.1
1904
Male, age 53, unknown
111.0
2769
Male, age 72, unknown
100.6
2227
Male, age 72, unknown
99.0
Substantia nigra nTPM: 129.6
2665
Male, age 74, both hemispheres
147.4
2241
Male, age 72, unknown
147.0
1889
Female, age 72, unknown
140.8
2699
Male, age 18, unknown
136.6
1916
Female, age 42, unknown
130.9
1851
Male, age 51, unknown
125.1
2409
Female, age 72, unknown
123.3
2583
Male, age 75, right hemisphere
118.6
1941
Male, age 53, unknown
114.7
2590
Female, age 75, unknown
111.2
Superior colliculus nTPM: 132.2
2087
Female, age 72, unknown
148.0
1995
Male, age 72, unknown
142.7
2261
Male, age 18, unknown
142.7
2668
Female, age 75, unknown
138.8
2587
Male, age 74, left hemisphere
136.4
1796
Male, age 53, unknown
134.6
2664
Male, age 75, both hemispheres
131.4
1913
Female, age 42, unknown
124.1
1839
Male, age 51, unknown
113.2
1895
Male, age 76, right hemisphere
110.4
Ventral tegmental area nTPM: 128.8
2218
Male, age 76, both hemispheres
137.6
2410
Female, age 72, unknown
133.7
1942
Male, age 51, unknown
131.2
2223
Female, age 72, unknown
125.5
2021
Male, age 53, unknown
122.7
1915
Female, age 42, unknown
121.9
MIDBRAIN - GTEx RNA-seqi
RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.
Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
70.3
GTEx sample id
Sample description
nTPM
Brain - Substantia nigra Average nTPM: 70.3
Samples: 183
Max nTPM: 120.2
Min nTPM: 43.1
Std nTPM: 15.5
Median nTPM: 67.6
GTEX-1GZ2Q-0011-R2b-SM-9OSWO
40-49 years, male
120.2
GTEX-1192X-0011-R2b-SM-GI4VV
50-59 years, male
120.1
GTEX-1O9I2-0011-R2b-SM-F3K53
50-59 years, male
120.1
GTEX-1H1ZS-0011-R2b-SM-CL54Q
70-79 years, male
115.4
GTEX-1117F-0011-R2b-SM-GI4VL
60-69 years, female
111.7
GTEX-13SLW-0011-R2b-SM-5O9C6
70-79 years, male
111.6
GTEX-13CF2-0011-R2a-SM-5L3DC
60-69 years, male
108.4
GTEX-1H3O1-0011-R2b-SM-CKZOT
60-69 years, male
104.7
GTEX-1RQEC-0011-R2b-SM-EY5ZT
60-69 years, male
102.6
GTEX-1C6VR-0011-R2a-SM-7RHGZ
60-69 years, male
102.5
GTEX-11TTK-0011-R2b-SM-GJ3PU
60-69 years, female
101.1
GTEX-12ZZX-0011-R2a-SM-5EGLG
40-49 years, female
99.9
GTEX-1B8SG-0011-R2b-SM-79OOT
50-59 years, male
94.5
GTEX-15EO6-0011-R2a-SM-6M46R
50-59 years, male
94.3
GTEX-1GN2E-0011-R2a-SM-9WG7D
60-69 years, male
93.0
GTEX-1MJK2-0011-R2b-SM-EXUS5
50-59 years, male
92.9
GTEX-1LVAO-0011-R2a-SM-EYYX1
60-69 years, male
92.6
GTEX-WVLH-0011-R2A-SM-3MJFJ
50-59 years, male
91.8
GTEX-1H3VE-0011-R2a-SM-CE6SA
40-49 years, male
90.3
GTEX-QMR6-0011-R2A-SM-32PKV
50-59 years, male
90.1
GTEX-1EKGG-0011-R2a-SM-CE6R8
60-69 years, male
89.9
GTEX-11GSP-0011-R2b-SM-9QEGE
60-69 years, female
89.4
GTEX-13NYB-0011-R2a-SM-5MR3C
40-49 years, male
89.3
GTEX-11NUK-0011-R2a-SM-GINAO
50-59 years, male
88.0
GTEX-1B996-0011-R2a-SM-7IGON
60-69 years, male
87.5
GTEX-1KWVE-0011-R2a-SM-G8OLX
30-39 years, male
87.3
GTEX-13OW8-0011-R2a-SM-5L3G2
60-69 years, male
86.0
GTEX-15SHU-0011-R2a-SM-GPRXS
40-49 years, female
85.9
GTEX-QDT8-0011-R2A-SM-32PKQ
30-39 years, female
84.8
GTEX-17HG3-0011-R2a-SM-7MGVX
30-39 years, female
83.7
GTEX-1HR98-0011-R2a-SM-ARL7A
60-69 years, male
83.4
GTEX-11PRG-0011-R2a-SM-69LQ5
50-59 years, male
83.0
GTEX-1LVA9-0011-R2a-SM-EZ6MJ
50-59 years, male
82.3
GTEX-1R9PO-0011-R2a-SM-F2TBH
60-69 years, female
81.5
GTEX-1I1GS-0011-R2b-SM-CMKHG
60-69 years, male
80.8
GTEX-13OW7-0011-R2b-SM-H6Q8E
50-59 years, male
80.5
GTEX-13X6K-0011-R2b-SM-5P9K3
60-69 years, female
80.3
GTEX-1F6I4-0011-R2a-SM-CL536
60-69 years, male
80.3
GTEX-NPJ7-0011-R2a-SM-2I3GF
60-69 years, female
80.0
GTEX-1RLM8-0011-R2a-SM-EZ6N4
50-59 years, male
79.5
GTEX-12WSH-0011-R2a-SM-5GU68
50-59 years, male
79.1
GTEX-1QMI2-0011-R2b-SM-F648R
60-69 years, male
79.0
GTEX-1MCQQ-0011-R2a-SM-F649V
60-69 years, male
78.5
GTEX-1PPGY-0011-R2b-SM-F33YW
60-69 years, male
78.5
GTEX-QVJO-0011-R2A-SM-2S1QK
60-69 years, female
77.6
GTEX-S7SE-0011-R2A-SM-2XCDC
50-59 years, male
77.2
GTEX-ZV68-0011-R2a-SM-4YCDK
50-59 years, female
76.3
GTEX-11GSO-0011-R2a-SM-57WDF
60-69 years, male
76.0
GTEX-1IGQW-0011-R2b-SM-D4P26
60-69 years, male
75.6
GTEX-13G51-0011-R2b-SM-5LZXS
60-69 years, male
75.5
GTEX-16GPK-0011-R2a-SM-GRR1F
60-69 years, male
75.1
GTEX-14ASI-0011-R2b-SM-5YY9H
60-69 years, male
74.7
GTEX-13OVL-0011-R2b-SM-H65ZN
50-59 years, male
74.6
GTEX-13N2G-0011-R2a-SM-5MR4Q
60-69 years, male
74.5
GTEX-1MA7X-0011-R2b-SM-EZ6MT
60-69 years, male
74.3
GTEX-15DCD-0011-R2b-SM-6LPIE
70-79 years, female
74.0
GTEX-1KD4Q-0011-R2a-SM-F649I
40-49 years, male
74.0
GTEX-14PJO-0011-R2a-SM-5ZZVF
60-69 years, male
73.8
GTEX-1RQED-0011-R2a-SM-F3K5T
60-69 years, male
73.8
GTEX-1JMPZ-0011-R2a-SM-G8LLS
30-39 years, male
73.6
GTEX-1EU9M-0011-R2b-SM-9QEH7
60-69 years, male
73.2
GTEX-ZAB4-0011-R2a-SM-4RGNP
40-49 years, male
73.1
GTEX-13OW6-0011-R2a-SM-5L3HG
50-59 years, male
72.8
GTEX-WL46-0011-R2A-SM-3LK6O
50-59 years, male
72.8
GTEX-13OVJ-0011-R2b-SM-5L3GP
50-59 years, female
72.7
GTEX-1I1GV-0011-R2a-SM-ARZLF
60-69 years, male
72.1
GTEX-11TUW-0011-R2b-SM-DO92T
60-69 years, male
72.0
GTEX-14BIN-0011-R2a-SM-5S2RJ
50-59 years, female
72.0
GTEX-1GTWX-0011-R2b-SM-ADEH5
60-69 years, male
71.6
GTEX-1B8L1-0011-R2a-SM-9OSVL
60-69 years, male
71.5
GTEX-ZDXO-0011-R2b-SM-4WKFG
60-69 years, male
71.3
GTEX-12WSF-0011-R2a-SM-5DUVU
70-79 years, male
70.7
GTEX-132Q8-0011-R2b-SM-5EQ5Z
60-69 years, male
70.7
GTEX-1B933-0011-R2b-SM-7IGNM
50-59 years, female
70.7
GTEX-11WQC-0011-R2a-SM-DO927
60-69 years, male
70.6
GTEX-14JG1-0011-R2a-SM-5ZZVE
40-49 years, male
70.6
GTEX-YJ89-0011-R2b-SM-4RGLT
60-69 years, male
70.5
GTEX-11ZTS-0011-R2b-SM-5BC75
60-69 years, female
70.4
GTEX-1A3MX-0011-R2b-SM-7EWFL
60-69 years, male
69.9
GTEX-14C5O-0011-R2a-SM-5ZZV2
60-69 years, male
69.5
GTEX-17EVP-0011-R2a-SM-7LG4W
40-49 years, male
69.5
GTEX-13QJC-0011-R2b-SM-5PNUN
60-69 years, female
69.2
GTEX-13O3O-0011-R2b-SM-5P9H1
60-69 years, female
68.9
GTEX-1EMGI-0011-R2b-SM-9OSVS
60-69 years, male
68.9
GTEX-1HBPH-0011-R2a-SM-GQ1DS
40-49 years, female
68.7
GTEX-1E1VI-0011-R2a-SM-9QEGS
50-59 years, male
68.3
GTEX-1NV8Z-0011-R2b-SM-F648N
60-69 years, male
68.3
GTEX-1LSVX-0011-R2a-SM-G8OL9
60-69 years, male
68.1
GTEX-12WSD-0011-R2a-SM-5LZWB
60-69 years, female
67.9
GTEX-1PIIG-0011-R2b-SM-F648W
30-39 years, male
67.9
GTEX-XLM4-0011-R2B-SM-4AT5Z
60-69 years, male
67.9
GTEX-117XS-0011-R2b-SM-GI4VT
60-69 years, male
67.6
GTEX-1I19N-0011-R2b-SM-GPRYG
70-79 years, male
67.5
GTEX-1IL2U-0011-R2a-SM-ARU6V
60-69 years, male
67.2
GTEX-1J1OQ-0011-R2b-SM-ARU88
40-49 years, female
67.1
GTEX-13FXS-0011-R2b-SM-5K7XX
50-59 years, male
66.9
GTEX-1N2EE-0011-R2a-SM-F649F
60-69 years, male
66.9
GTEX-1LB8K-0011-R2a-SM-EZ6MQ
50-59 years, male
66.6
GTEX-1IDJH-0011-R2a-SM-GPI9D
70-79 years, male
66.5
GTEX-111FC-0011-R2a-SM-GIN8S
60-69 years, male
66.3
GTEX-1IKJJ-0011-R2b-SM-ARZLJ
60-69 years, male
66.3
GTEX-T6MN-0011-R2A-SM-32QOW
50-59 years, male
66.3
GTEX-13O3Q-0011-R2b-SM-5KM3K
50-59 years, male
66.1
GTEX-1KD5A-0011-R2b-SM-G9EPP
50-59 years, male
66.1
GTEX-13RTJ-0011-R2a-SM-5PNW9
60-69 years, male
66.0
GTEX-15ER7-0011-R2a-SM-6M46O
20-29 years, female
66.0
GTEX-1PWST-0011-R2b-SM-F3K5I
70-79 years, male
65.6
GTEX-1GMR8-0011-R2a-SM-CE6RD
50-59 years, female
65.5
GTEX-15DYW-0011-R2b-SM-7KUKY
60-69 years, female
65.4
GTEX-1JMQK-0011-R2a-SM-EYYXQ
60-69 years, male
65.1
GTEX-1LSNL-0011-R2a-SM-EZ6MK
50-59 years, male
65.1
GTEX-1R9K4-0011-R2b-SM-G8LLF
60-69 years, male
65.1
GTEX-R55E-0011-R2A-SM-EYYV9
20-29 years, male
65.1
GTEX-13SLX-0011-R2b-SM-5S2VP
50-59 years, female
64.9
GTEX-1LG7Y-0011-R2b-SM-G8LMM
50-59 years, male
64.6
GTEX-11EMC-0011-R2b-SM-DO114
60-69 years, female
64.4
GTEX-1N5O9-0011-R2a-SM-G8LM1
60-69 years, male
64.4
GTEX-11UD1-0011-R2b-SM-5BC6O
40-49 years, female
64.3
GTEX-12WSA-0011-R2a-SM-57WDK
60-69 years, male
64.2
GTEX-1445S-0011-R2b-SM-5PNUH
60-69 years, male
64.2
GTEX-1POEN-0011-R2b-SM-G8LLP
30-39 years, female
64.0
GTEX-ZYY3-0011-R2a-SM-GNTB2
60-69 years, female
64.0
GTEX-15RJE-0011-R2b-SM-79OMP
40-49 years, male
63.9
GTEX-131XH-0011-R2b-SM-5DUVY
50-59 years, male
63.6
GTEX-ZAK1-0011-R2a-SM-GPRX1
50-59 years, female
63.4
GTEX-Q2AG-0011-R2A-SM-2HMIT
40-49 years, female
63.2
GTEX-1F6IF-0011-R2b-SM-9QEHB
60-69 years, male
63.1
GTEX-1HT8W-0011-R2a-SM-CMKH9
30-39 years, male
63.1
GTEX-14BIM-0011-R2b-SM-69LQ6
60-69 years, female
63.0
GTEX-XMD1-0011-R2B-SM-4AT5N
60-69 years, male
62.9
GTEX-1399T-0011-R2b-SM-5DUXM
60-69 years, male
62.8
GTEX-1GN73-0011-R2a-SM-CJI2V
60-69 years, male
62.5
GTEX-1313W-0011-R2a-SM-5EGLF
50-59 years, female
62.0
GTEX-11GS4-0011-R2a-SM-DO942
60-69 years, male
61.7
GTEX-1IY9M-0011-R2a-SM-D4P29
60-69 years, male
61.6
GTEX-15CHQ-0011-R2b-SM-6AJAD
60-69 years, male
61.3
GTEX-1JJ6O-0011-R2a-SM-EY5ZO
60-69 years, male
61.3
GTEX-1N2EF-0011-R2b-SM-F6482
60-69 years, male
61.2
GTEX-UTHO-0011-R2A-SM-3GIKC
60-69 years, male
61.1
GTEX-1LKK1-0011-R2b-SM-G8OLT
50-59 years, female
60.6
GTEX-16Z82-0011-R2b-SM-79OK9
60-69 years, male
59.9
GTEX-WHSE-0011-R2A-SM-3P5ZL
20-29 years, male
59.9
GTEX-1A8G7-0011-R2a-SM-7IGQI
60-69 years, male
59.3
GTEX-1HB9E-0011-R2b-SM-A96RW
50-59 years, male
59.2
GTEX-1HFI6-0011-R2a-SM-CMKH5
40-49 years, male
59.2
GTEX-145LS-0011-R2a-SM-5PNZI
60-69 years, female
59.0
GTEX-1JMQJ-0011-R2a-SM-F6493
50-59 years, male
58.9
GTEX-13NYS-0011-R2b-SM-5MR4G
60-69 years, male
58.5
GTEX-1CB4G-0011-R2a-SM-9QEGQ
60-69 years, male
58.3
GTEX-1RDX4-0011-R2b-SM-F649Z
50-59 years, female
58.2
GTEX-1CB4J-0011-R2a-SM-9WG5N
60-69 years, male
58.1
GTEX-1F75B-0011-R2a-SM-ARL8I
50-59 years, male
57.6
GTEX-1LH75-0011-R2b-SM-EYYWQ
50-59 years, female
57.6
GTEX-X4XX-0011-R2A-SM-3P623
60-69 years, male
57.0
GTEX-12696-0011-R2b-SM-GHWPY
60-69 years, male
55.9
GTEX-Z93S-0011-R2a-SM-4RGNG
50-59 years, male
55.8
GTEX-1JN1M-0011-R2b-SM-G9EPE
60-69 years, female
55.3
GTEX-13X6I-0011-R2b-SM-5PNWQ
60-69 years, male
55.1
GTEX-T2IS-0011-R2A-SM-32QPF
20-29 years, female
54.4
GTEX-YFC4-0011-R2a-SM-4V6DZ
40-49 years, female
54.4
GTEX-1NV5F-0011-R2a-SM-G8LME
60-69 years, female
54.2
GTEX-1HSMO-0011-R2a-SM-CL553
60-69 years, male
54.1
GTEX-1J8Q2-0011-R2b-SM-EAZ2X
60-69 years, male
54.1
GTEX-ZAJG-0011-R2a-SM-GNTAX
50-59 years, female
53.9
GTEX-1GN1U-0011-R2a-SM-CL53A
50-59 years, female
51.0
GTEX-1I1CD-0011-R2a-SM-CM2T3
60-69 years, female
51.0
GTEX-ZE9C-0011-R2a-SM-4WKGH
60-69 years, male
49.9
GTEX-OHPN-0011-R2A-SM-2I5FB
60-69 years, female
49.8
GTEX-1H1DG-0011-R2a-SM-ADEIQ
70-79 years, male
49.7
GTEX-13PDP-0011-R2b-SM-5O9DH
60-69 years, male
49.5
GTEX-147GR-0011-R2b-SM-5S2RQ
60-69 years, male
49.4
GTEX-ZZPT-0011-R2a-SM-GNTB1
50-59 years, male
48.7
GTEX-1H23P-0011-R2a-SM-CKZP3
60-69 years, male
48.1
GTEX-11DZ1-0011-R2a-SM-DNZZM
50-59 years, male
46.9
GTEX-1F48J-0011-R2a-SM-CL535
50-59 years, female
46.7
GTEX-15G19-0011-R2b-SM-H6Q7S
60-69 years, male
46.5
GTEX-139TS-0011-R2b-SM-5J1MX
60-69 years, male
46.4
GTEX-X4EP-0011-R2B-SM-3P625
60-69 years, female
46.3
GTEX-14PN4-0011-R2a-SM-6EU2Y
50-59 years, male
46.2
GTEX-1P4AB-0011-R2a-SM-F649K
50-59 years, male
46.1
GTEX-X585-0011-R2B-SM-46MVF
50-59 years, male
45.8
GTEX-RN5K-0011-R2A-SM-GQ1CA
50-59 years, female
43.7
GTEX-RU72-0011-R2A-SM-2TF6O
50-59 years, female
43.1
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MIDBRAIN - FANTOM5 CAGEi
RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.
Max subtype Scaled Tags Per Millioni
Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
87.5
Macaque sample
Sample description
nTPM
Substantia nigra nTPM: 87.2
Samples: 1
Max nTPM: 87.2
Min nTPM: 87.2
Sample A
87.2
Midbrain nTPM: 87.5
Samples: 1
Max nTPM: 87.5
Min nTPM: 87.5
Sample A
87.5
Superior colliculi nTPM: 83.7
Samples: 1
Max nTPM: 83.7
Min nTPM: 83.7
Sample A
83.7
MIDBRAIN - Pig RNA-seqi
RNA-seq data obtained from pig brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
72.6
Pig sample
Sample description
nTPM
Substantia nigra nTPM: 72.6
Samples: 3
Max nTPM: 80.6
Min nTPM: 60.5
Sample A
Female
76.8
Sample B
Female
60.5
Sample C
Male
80.6
Midbrain nTPM: 72.4
Samples: 3
Max nTPM: 81.9
Min nTPM: 66.1
Sample B
Female
66.1
Sample C
Male
81.9
Sample D
Male
69.1
Periaqueductal gray nTPM: 68.6
Samples: 3
Max nTPM: 73.6
Min nTPM: 65.2
Sample B
Female
67.0
Sample C
Male
73.6
Sample D
Male
65.2
Superior colliculi nTPM: 70.6
Samples: 4
Max nTPM: 75.8
Min nTPM: 65.9
Sample A
Female
67.9
Sample B
Female
65.9
Sample C
Male
75.8
Sample D
Male
72.6
MIDBRAIN - Mouse RNA-seqi
RNA-seq data obtained from mouse brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
115.7
Mouse sample
Sample description
nTPM
Midbrain nTPM: 115.7
Samples: 4
Max nTPM: 118.6
Min nTPM: 114.5
Sample A
114.9
Sample B
114.5
Sample C
118.6
Sample D
114.7
MIDBRAIN - Rat RNA-seq
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
67.8
Rat sample
Sample description
nTPM
Midbrain nTPM: 67.8
Samples: 4
Max nTPM: 69.5
Min nTPM: 66.6
Sample A
68.2
Sample A
69.5
Sample A
66.6
Sample A
66.8
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The Human Protein Atlas project is funded
