MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:105.5 nTPM
HPA Brain:150.8 nTPM
GTEx:105.5 nTPM
FANTOM5:148.6 Scaled Tags Per Million
Pig:113.5 nTPM
Mouse:92.7 nTPM
Allen mouse:4.6 Expression energy
BRAIN - SINGLE CELL RNA EXPRESSION

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 150.8
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 143.0
2828 Female, age 72, unknown 208.9
2219 Male, age 76, both hemispheres 185.5
2586 Male, age 75, left hemisphere 167.2
2666 Male, age 74, left hemisphere 145.3
1827 Male, age 72, unknown 129.3
1870 Female, age 42, unknown 125.8
2411 Female, age 72, unknown 122.7
1830 Male, age 51, unknown 117.8
2019 Male, age 18, unknown 115.8
1833 Male, age 53, unknown 112.0
Dorsal raphe nucleus
nTPM: 138.4
2047 Male, age 72, unknown 145.6
2298 Female, age 72, unknown 141.7
2016 Female, age 72, unknown 141.2
1828 Male, age 53, unknown 135.9
2750 Male, age 76, both hemispheres 127.9
Inferior colliculus
nTPM: 110.2
1848 Female, age 42, unknown 116.4
1890 Male, age 53, unknown 113.8
2849 Male, age 72, unknown 111.0
2097 Female, age 72, unknown 99.6
Median raphe nucleus
nTPM: 106.4
2220 Male, age 76, midline 106.4
Periaquaductal grey, anterior
nTPM: 150.8
1795 Male, age 51, unknown 177.6
1947 Male, age 18, unknown 138.4
2502 Female, age 75, unknown 136.6
Periaquaductal grey, dorsal
nTPM: 122.2
1831 Male, age 72, unknown 135.8
1840 Male, age 53, unknown 131.0
2464 Female, age 72, unknown 112.3
2850 Male, age 76, both hemispheres 109.9
Periaquaductal grey, lateral
nTPM: 130.2
2053 Male, age 18, unknown 152.4
2272 Male, age 74, both hemispheres 128.7
2140 Male, age 76, both hemispheres 109.7
Pretectal area
nTPM: 144.4
2667 Female, age 75, unknown 176.8
2224 Female, age 72, unknown 162.0
1815 Male, age 53, unknown 151.9
2407 Male, age 75, both hemispheres 144.3
2273 Male, age 74, both hemispheres 142.7
2825 Male, age 18, unknown 142.5
1817 Female, age 42, unknown 140.1
1944 Female, age 72, unknown 137.9
2316 Male, age 76, right hemisphere 134.9
2007 Male, age 72, unknown 130.6
1816 Male, age 51, unknown 124.8
Red nucleus
nTPM: 146.5
2503 Female, age 72, unknown 183.5
2725 Female, age 75, unknown 174.3
2769 Male, age 72, unknown 151.9
2588 Male, age 74, left hemisphere 149.0
1904 Male, age 53, unknown 146.7
2227 Male, age 72, unknown 145.9
1865 Male, age 51, unknown 145.6
2823 Male, age 76, right hemisphere 143.6
1954 Female, age 42, unknown 134.8
1821 Female, age 72, unknown 130.8
2785 Male, age 18, unknown 128.3
2584 Male, age 75, left hemisphere 123.9
Substantia nigra
nTPM: 136.6
2699 Male, age 18, unknown 204.7
2665 Male, age 74, both hemispheres 175.0
1851 Male, age 51, unknown 157.2
1916 Female, age 42, unknown 132.4
2583 Male, age 75, right hemisphere 124.1
1941 Male, age 53, unknown 123.5
1889 Female, age 72, unknown 122.8
2409 Female, age 72, unknown 115.8
2590 Female, age 75, unknown 111.6
2241 Male, age 72, unknown 98.6
Superior colliculus
nTPM: 147.5
1995 Male, age 72, unknown 189.5
2664 Male, age 75, both hemispheres 187.8
1913 Female, age 42, unknown 161.3
1796 Male, age 53, unknown 153.6
2087 Female, age 72, unknown 138.9
2587 Male, age 74, left hemisphere 137.4
1839 Male, age 51, unknown 131.1
2668 Female, age 75, unknown 129.8
1895 Male, age 76, right hemisphere 125.6
2261 Male, age 18, unknown 120.4
Ventral tegmental area
nTPM: 132.5
2021 Male, age 53, unknown 145.2
1942 Male, age 51, unknown 143.8
2223 Female, age 72, unknown 135.5
1915 Female, age 42, unknown 129.9
2410 Female, age 72, unknown 127.8
2218 Male, age 76, both hemispheres 113.0

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 105.5
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 105.5
Samples: 183

Max nTPM: 302.0
Min nTPM: 9.9
Std nTPM: 42.3
Median nTPM: 97.7
GTEX-1MCQQ-0011-R2a-SM-F649V 60-69 years, male 302.0
GTEX-1KWVE-0011-R2a-SM-G8OLX 30-39 years, male 272.1
GTEX-1NV8Z-0011-R2b-SM-F648N 60-69 years, male 196.2
GTEX-13SLW-0011-R2b-SM-5O9C6 70-79 years, male 193.5
GTEX-1LSNL-0011-R2a-SM-EZ6MK 50-59 years, male 188.7
GTEX-ZV68-0011-R2a-SM-4YCDK 50-59 years, female 186.6
GTEX-17HG3-0011-R2a-SM-7MGVX 30-39 years, female 185.5
GTEX-1NV5F-0011-R2a-SM-G8LME 60-69 years, female 181.7
GTEX-12ZZX-0011-R2a-SM-5EGLG 40-49 years, female 181.4
GTEX-1LG7Y-0011-R2b-SM-G8LMM 50-59 years, male 172.4
GTEX-1R9K4-0011-R2b-SM-G8LLF 60-69 years, male 170.7
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 148.6
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 148.6
FF:10158-103A5 76 years, female 148.6

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 113.5
Pig sample Sample description nTPM
Substantia nigra
nTPM: 113.5
Samples: 4

Max nTPM: 144.6
Min nTPM: 91.8
Sample A Female 108.8
Sample B Female 91.8
Sample C Male 108.8
Sample D Male 144.6
Midbrain
nTPM: 109.1
Samples: 4

Max nTPM: 175.4
Min nTPM: 73.9
Sample A Female 175.4
Sample B Female 83.2
Sample C Male 103.9
Sample D Male 73.9
Periaqueductal gray
nTPM: 84.2
Samples: 3

Max nTPM: 94.2
Min nTPM: 76.5
Sample B Female 94.2
Sample C Male 76.5
Sample D Male 81.9
Superior colliculi
nTPM: 81.7
Samples: 4

Max nTPM: 98.0
Min nTPM: 47.8
Sample A Female 87.4
Sample B Female 47.8
Sample C Male 93.7
Sample D Male 98.0

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 92.7
Mouse sample Sample description nTPM
Midbrain
nTPM: 92.7
Samples: 4

Max nTPM: 107.3
Min nTPM: 83.3
Sample A Male 107.3
Sample B Male 87.5
Sample C Female 83.3
Sample D Female 92.7

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 4.6
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 4.6
155 Antisense, RP_Baylor_102646, Mouse strain C57BL/6J (56 days, male) 9.1
154 Antisense, RP_Baylor_102646, Mouse strain C57BL/6J (56 days, male) 5.1
156 Sense, RPS_Baylor_36956, Mouse strain C57BL/6J (56 days, male) 0.1

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