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BRAIN AMYGDALA Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS
MEDULLA OBLONGATA MIDBRAIN OLFACTORY BULB PONS SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
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VALIDATION
Brain proteome
Amygdala
Brain methods
AMYGDALA - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.

Scroll down to view mRNA expression data in more detail.

Consensus:99.7 nTPM
HPA Brain:272.6 nTPM
GTEx:99.7 nTPM
FANTOM5:611.3 Scaled Tags Per Million
Pig:248.9 nTPM
Mouse:347.7 nTPM
Allen mouse:24.7 Expression energy
BRAIN - SINGLE CELL RNA EXPRESSION
Explore single cell type data

AMYGDALA - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

272.6
Sample id Sample description nTPM
Amygdala
nTPM: 272.6
2814 Male, age 76, right hemisphere 341.1
2514 Male, age 75, right hemisphere 285.8
2695 Female, age 67, right hemisphere 270.7
1987 Female, age 91, left hemisphere 233.4
2517 Female, age 94, left hemisphere 231.8
Basal amygdala
nTPM: 247.0
2110 Male, age 80, left hemisphere 278.3
2609 Male, age 75, right hemisphere 272.9
1955 Male, age 76, both hemispheres 253.9
2685 Female, age 94, left hemisphere 247.4
2243 Female, age 91, right hemisphere 225.3
2827 Female, age 67, right hemisphere 204.0
Central amygdala
nTPM: 246.7
1905 Male, age 76, both hemispheres 298.6
2239 Male, age 80, left hemisphere 256.9
2515 Male, age 75, right hemisphere 254.8
2826 Female, age 94, left hemisphere 217.0
2701 Female, age 91, right hemisphere 206.3
Corticomedial amygdala
nTPM: 241.5
2829 Male, age 80, left hemisphere 286.3
2428 Male, age 75, right hemisphere 261.2
2429 Female, age 94, left hemisphere 258.4
2240 Male, age 76, both hemispheres 251.8
2242 Female, age 91, right hemisphere 204.7
2535 Female, age 67, right hemisphere 186.5
Lateral amygdala
nTPM: 243.9
1883 Male, age 76, both hemispheres 300.2
2516 Male, age 75, right hemisphere 281.9
2534 Female, age 94, left hemisphere 240.6
2256 Male, age 80, left hemisphere 223.5
2830 Female, age 67, right hemisphere 214.6
2255 Female, age 91, right hemisphere 202.9

AMYGDALA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

99.7
GTEx sample id Sample description nTPM
Brain - Amygdala
Average nTPM: 99.7
Samples: 181

Max nTPM: 158.6
Min nTPM: 47.6
Std nTPM: 24.3
Median nTPM: 100.6
GTEX-13NYB-0011-R4b-SM-9QEGJ 40-49 years, male 158.6
GTEX-14ABY-0011-R4b-SM-5S2VN 50-59 years, male 158.6
GTEX-1LB8K-0011-R4b-SM-F6487 50-59 years, male 150.9
GTEX-15SHU-0011-R4b-SM-7IGLC 40-49 years, female 146.1
GTEX-Q2AG-0011-R4A-SM-2HMKA 40-49 years, female 144.0
GTEX-12ZZY-0011-R4a-SM-GIN9F 60-69 years, male 143.7
GTEX-XLM4-0011-R4B-SM-4AT5C 60-69 years, male 142.7
GTEX-11NUK-0011-R4a-SM-DO12B 50-59 years, male 142.5
GTEX-13FLV-0011-R4a-SM-5LZYU 50-59 years, male 141.5
GTEX-1JN1M-0011-R4b-SM-F6494 60-69 years, female 140.1
GTEX-11OF3-0011-R4a-SM-GJ3RB 60-69 years, male 139.7
GTEX-1AX9I-0011-R4b-SM-7EPIB 60-69 years, male 138.1
GTEX-1B8L1-0011-R4a-SM-7EWFJ 60-69 years, male 137.2
GTEX-1N2EF-0011-R4a-SM-F341F 60-69 years, male 134.2
GTEX-14JIY-0011-R4b-SM-5ZZV7 60-69 years, male 133.8
GTEX-1J8EW-0011-R4b-SM-ARU89 60-69 years, female 132.4
GTEX-13OW7-0011-R4b-SM-5O9CX 50-59 years, male 131.8
GTEX-16YQH-0011-R4a-SM-7EPGI 30-39 years, male 131.5
GTEX-14BMV-0011-R4a-SM-H6Q7P 50-59 years, male 130.4
GTEX-15RJE-0011-R4a-SM-H7OH4 40-49 years, male 130.2
GTEX-1H23P-0011-R4b-SM-CL54R 60-69 years, male 130.0
GTEX-WZTO-0011-R4A-SM-3NMC7 40-49 years, male 129.5
GTEX-14C5O-0011-R4b-SM-G9ERF 60-69 years, male 129.0
GTEX-11ZTS-0011-R4b-SM-GINAQ 60-69 years, female 127.9
GTEX-1KWVE-0011-R4a-SM-F3K5X 30-39 years, male 127.2
GTEX-1HCU6-0011-R4b-SM-ARU74 60-69 years, female 127.1
GTEX-14E7W-0011-R4b-SM-62LEA 70-79 years, male 125.7
GTEX-RNOR-0011-R4A-SM-3GAD3 50-59 years, female 124.4
GTEX-14PJM-0011-R4a-SM-5YYAS 50-59 years, female 124.2
GTEX-17EVP-0011-R4a-SM-79OML 40-49 years, male 123.8
GTEX-S7SE-0011-R4A-SM-2XCDB 50-59 years, male 123.7
GTEX-1EX96-0011-R4a-SM-ARU82 50-59 years, male 123.6
GTEX-1RLM8-0011-R4a-SM-F2TBL 50-59 years, male 123.6
GTEX-1N2DW-0011-R4b-SM-EZ6MD 50-59 years, male 123.5
GTEX-131XH-0011-R4b-SM-5DUWB 50-59 years, male 123.0
GTEX-14PN4-0011-R4a-SM-686ZT 50-59 years, male 121.0
GTEX-1F6IF-0011-R4b-SM-CKZNJ 60-69 years, male 120.0
GTEX-ZYY3-0011-R4a-SM-GQ1CY 60-69 years, female 119.2
GTEX-13O3O-0011-R4b-SM-5KM3F 60-69 years, female 119.1
GTEX-WVLH-0011-R4A-SM-3MJFS 50-59 years, male 118.8
GTEX-1HB9E-0011-R4b-SM-ARZLS 50-59 years, male 118.5
GTEX-111FC-0011-R4a-SM-GIN8K 60-69 years, male 117.4
GTEX-11ZVC-0011-R4a-SM-5BC6Z 50-59 years, female 116.9
GTEX-15DYW-0011-R4a-SM-6M46V 60-69 years, female 116.5
GTEX-117XS-0011-R4b-SM-GJ3PR 60-69 years, male 116.0
GTEX-1A3MX-0011-R4b-SM-7EWFK 60-69 years, male 115.8
GTEX-1EMGI-0011-R4b-SM-CJI2D 60-69 years, male 115.7
GTEX-13X6K-0011-R4b-SM-5P9HO 60-69 years, female 114.7
GTEX-1QP6S-0011-R4b-SM-F33ZY 40-49 years, male 114.7
GTEX-13PLJ-0011-R4b-SM-GJ3R6 60-69 years, female 114.4
GTEX-1313W-0011-R4b-SM-5KLZV 50-59 years, female 113.9
GTEX-1LSVX-0011-R4b-SM-EXURP 60-69 years, male 113.7
GTEX-11ZU8-0011-R4a-SM-5BC6Y 60-69 years, male 113.5
GTEX-1JMLX-0011-R4a-SM-EY5YJ 50-59 years, male 113.5
GTEX-1RQEC-0011-R4b-SM-F342C 60-69 years, male 112.3
GTEX-1IY9M-0011-R4a-SM-C1YQ2 60-69 years, male 112.0
GTEX-1JJ6O-0011-R4a-SM-EY5YM 60-69 years, male 111.8
GTEX-1LVA9-0011-R4a-SM-F2TA2 50-59 years, male 111.3
GTEX-1J1OQ-0011-R4a-SM-D4P2A 40-49 years, female 111.2
GTEX-11NV4-0011-R4a-SM-GI4XC 60-69 years, male 110.6
GTEX-12WSC-0011-R4a-SM-H6Q8M 50-59 years, male 110.4
GTEX-15DCD-0011-R4a-SM-69LPB 70-79 years, female 110.1
GTEX-1F7RK-0011-R4b-SM-9QEI7 20-29 years, female 110.1
GTEX-11ONC-0011-R4b-SM-DO93H 60-69 years, male 109.7
GTEX-QVUS-0011-R4A-SM-3GAE7 60-69 years, female 109.2
GTEX-1B996-0011-R4b-SM-9OSVO 60-69 years, male 109.1
GTEX-13OW5-0011-R4b-SM-5L3HS 60-69 years, male 108.5
GTEX-13X6J-0011-R4b-SM-5P9K4 50-59 years, male 108.3
GTEX-1POEN-0011-R4b-SM-F3K4O 30-39 years, female 108.3
GTEX-17HG3-0011-R4a-SM-7IGLL 30-39 years, female 107.7
GTEX-WHSE-0011-R4A-SM-3P5ZN 20-29 years, male 107.6
GTEX-13VXU-0011-R4b-SM-5O9CI 50-59 years, male 107.4
GTEX-15ER7-0011-R4a-SM-6M46S 20-29 years, female 107.2
GTEX-1F75A-0011-R4a-SM-ARL8J 50-59 years, male 107.1
GTEX-1H3NZ-0011-R4a-SM-CL54T 60-69 years, male 106.9
GTEX-1PIIG-0011-R4a-SM-F2TAQ 30-39 years, male 106.3
GTEX-1JMOU-0011-R4b-SM-EY5ZL 60-69 years, female 105.9
GTEX-13RTJ-0011-R4b-SM-5PNX1 60-69 years, male 105.8
GTEX-1H1ZS-0011-R4b-SM-CKZO7 70-79 years, male 105.6
GTEX-PVOW-0011-R4A-SM-H6Q8O 40-49 years, male 105.1
GTEX-1CB4G-0011-R4b-SM-CJI28 60-69 years, male 105.0
GTEX-YFC4-0011-R4a-SM-4RGLQ 40-49 years, female 103.8
GTEX-1GTWX-0011-R4a-SM-C1YQI 60-69 years, male 103.3
GTEX-QVJO-0011-R4A-SM-2S1QL 60-69 years, female 103.1
GTEX-11GSO-0011-R4b-SM-GJ3R8 60-69 years, male 102.8
GTEX-1P4AB-0011-R4b-SM-F2T9S 50-59 years, male 102.7
GTEX-1MJK2-0011-R4a-SM-F3426 50-59 years, male 102.1
GTEX-13OVJ-0011-R4b-SM-5P9H5 50-59 years, female 101.7
GTEX-1O9I2-0011-R4b-SM-F3K4K 50-59 years, male 101.6
GTEX-13FHO-0011-R4b-SM-H6611 60-69 years, male 101.2
GTEX-12WSD-0011-R4b-SM-5LZUA 60-69 years, female 100.6
GTEX-11DXY-0011-R4b-SM-GI4VR 60-69 years, male 100.5
GTEX-1LVAO-0011-R4a-SM-EXURO 60-69 years, male 100.5
GTEX-1GN73-0011-R4b-SM-9QEIK 60-69 years, male 100.4
GTEX-13OVL-0011-R4b-SM-5L3HV 50-59 years, male 100.3
GTEX-1GMR8-0011-R4a-SM-9OSX1 50-59 years, female 99.3
GTEX-13OW8-0011-R4a-SM-9WG6V 60-69 years, male 99.1
GTEX-12ZZW-0011-R4a-SM-5DUX9 50-59 years, male 98.8
GTEX-1J8Q2-0011-R4a-SM-ADEHA 60-69 years, male 98.7
GTEX-1F48J-0011-R4b-SM-9OSVX 50-59 years, female 98.6
GTEX-N7MT-0011-R4a-SM-2I3G9 60-69 years, female 98.3
GTEX-14JG1-0011-R4b-SM-62LEB 40-49 years, male 97.9
GTEX-13JVG-0011-R4a-SM-5MR4C 60-69 years, male 97.6
GTEX-ZAK1-0011-R4a-SM-6AJBK 50-59 years, female 96.9
GTEX-1HBPI-0011-R4a-SM-CJI3K 50-59 years, male 96.7
GTEX-1PWST-0011-R4a-SM-F2T9X 70-79 years, male 96.5
GTEX-1HFI6-0011-R4b-SM-A96RT 40-49 years, male 95.7
GTEX-ZAB4-0011-R4a-SM-4SOKB 40-49 years, male 95.7
GTEX-131YS-0011-R4a-SM-5DUVL 60-69 years, female 95.2
GTEX-1C6VR-0011-R4b-SM-9QEGZ 60-69 years, male 95.0
GTEX-NL4W-0011-R4a-SM-2I5GZ 50-59 years, male 94.6
GTEX-12WSF-0011-R4b-SM-5HL88 70-79 years, male 94.2
GTEX-ZVZQ-0011-R4b-SM-57WCZ 60-69 years, female 93.4
GTEX-1445S-0011-R4a-SM-5PNWN 60-69 years, male 93.0
GTEX-147F4-0011-R4b-SM-GJ3R4 50-59 years, male 92.1
GTEX-1JMQJ-0011-R4b-SM-EXUT8 50-59 years, male 92.1
GTEX-144GL-0011-R4a-SM-5PNUI 50-59 years, male 92.0
GTEX-ZZPT-0011-R4a-SM-GPRX4 50-59 years, male 91.2
GTEX-11PRG-0011-R4a-SM-DNZZR 50-59 years, male 90.3
GTEX-13X6I-0011-R4b-SM-5PNU9 60-69 years, male 90.2
GTEX-11GS4-0011-R4a-SM-GJ3RJ 60-69 years, male 89.6
GTEX-1LH75-0011-R4a-SM-F2TAM 50-59 years, female 88.6
GTEX-1H3O1-0011-R4b-SM-A9SKE 60-69 years, male 88.5
GTEX-11TTK-0011-R4a-SM-DNZZU 60-69 years, female 88.4
GTEX-1N2EE-0011-R4a-SM-EXOII 60-69 years, male 88.2
GTEX-1RDX4-0011-R4b-SM-F3K43 50-59 years, female 88.0
GTEX-1E1VI-0011-R4b-SM-9QEHV 50-59 years, male 86.5
GTEX-13N2G-0011-R4b-SM-5MR54 60-69 years, male 86.2
GTEX-1HBPH-0011-R4a-SM-A96RX 40-49 years, female 85.6
GTEX-13112-0011-R4b-SM-5DUXL 50-59 years, male 83.9
GTEX-13QJC-0011-R4a-SM-H65ZP 60-69 years, female 83.6
GTEX-13SLX-0011-R4a-SM-5O9BJ 50-59 years, female 83.0
GTEX-13O3Q-0011-R4a-SM-5P9H2 50-59 years, male 82.9
GTEX-14JFF-0011-R4a-SM-5ZZV5 60-69 years, male 82.3
GTEX-NPJ7-0011-R4a-SM-2I3GJ 60-69 years, female 82.2
GTEX-145LU-0011-R4b-SM-5P9K1 50-59 years, male 80.3
GTEX-1H1CY-0011-R4b-SM-CJI3G 60-69 years, female 80.2
GTEX-1LKK1-0011-R4b-SM-EY5YA 50-59 years, female 79.9
GTEX-13QIC-0011-R4a-SM-5PNX8 60-69 years, female 79.5
GTEX-13SLW-0011-R4b-SM-5S2W2 70-79 years, male 78.7
GTEX-13N1W-0011-R4a-SM-5MR52 70-79 years, male 78.6
GTEX-12WSH-0011-R4a-SM-5GU6K 50-59 years, male 78.1
GTEX-15CHQ-0011-R4a-SM-686ZX 60-69 years, male 78.0
GTEX-1GZ4I-0011-R4a-SM-9QEI9 50-59 years, male 78.0
GTEX-14PQA-0011-R4b-SM-6AJBU 50-59 years, female 77.3
GTEX-TSE9-0011-R4A-SM-3DB7H 60-69 years, female 77.3
GTEX-147GR-0011-R4a-SM-5S2V2 60-69 years, male 77.1
GTEX-14ASI-0011-R4a-SM-69LQ4 60-69 years, male 77.0
GTEX-13OW6-0011-R4a-SM-5O9DX 50-59 years, male 76.2
GTEX-14BIM-0011-R4b-SM-5S2RK 60-69 years, female 73.4
GTEX-NPJ8-0011-R4a-SM-2HML3 40-49 years, male 73.4
GTEX-1R46S-0011-R4b-SM-F2TBF 60-69 years, female 73.1
GTEX-139T8-0011-R4a-SM-5HL54 60-69 years, male 71.4
GTEX-1399T-0011-R4b-SM-5DUVX 60-69 years, male 71.1
GTEX-13OVH-0011-R4a-SM-5KM3W 70-79 years, male 70.8
GTEX-1ICLZ-0011-R4a-SM-CMKHL 60-69 years, male 70.7
GTEX-1OJC4-0011-R4a-SM-F3K54 50-59 years, female 69.5
GTEX-13PVQ-0011-R4a-SM-5O9CT 50-59 years, male 68.0
GTEX-13NYS-0011-R4b-SM-5MR3O 60-69 years, male 67.9
GTEX-1H1DG-0011-R4a-SM-CE6RQ 70-79 years, male 67.0
GTEX-13CZV-0011-R4b-SM-5J2NY 60-69 years, male 66.9
GTEX-1C6WA-0011-R4a-SM-9QEH2 60-69 years, male 66.9
GTEX-X585-0011-R4B-SM-46MVH 50-59 years, male 66.9
GTEX-1GF9W-0011-R4a-SM-CE6RH 60-69 years, male 66.6
GTEX-145LS-0011-R4b-SM-5S2UT 60-69 years, female 66.4
GTEX-X4XX-0011-R4B-SM-46MWL 60-69 years, male 65.5
GTEX-1QMI2-0011-R4b-SM-F3K4R 60-69 years, male 62.9
GTEX-12ZZZ-0011-R4b-SM-5DUV7 60-69 years, male 62.8
GTEX-14DAQ-0011-R4a-SM-5YYAI 60-69 years, female 61.1
GTEX-1JMQK-0011-R4a-SM-G8LLQ 60-69 years, male 60.2
GTEX-1117F-0011-R4b-SM-GI4VM 60-69 years, female 59.9
GTEX-1PPGY-0011-R4a-SM-F3K4F 60-69 years, male 59.8
GTEX-17F97-0011-R4b-SM-7KFS2 50-59 years, male 58.3
GTEX-15EO6-0011-R4a-SM-7KUKZ 50-59 years, male 56.0
GTEX-11DYG-0011-R4b-SM-GJ3RG 60-69 years, male 55.3
GTEX-1I1GR-0011-R4a-SM-CMKHC 60-69 years, male 55.1
GTEX-1NV8Z-0011-R4b-SM-G8LMZ 60-69 years, male 54.5
GTEX-12WSA-0011-R4a-SM-57WB7 60-69 years, male 54.4
GTEX-OHPN-0011-R4A-SM-2I5FD 60-69 years, female 49.3
GTEX-17EVQ-0011-R4b-SM-7LT94 70-79 years, male 48.2
GTEX-1RQED-0011-R4b-SM-F2I2X 60-69 years, male 47.6
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AMYGDALA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

611.3
FANTOM5 sample id Sample description Scaled Tags Per Million
Amygdala
Scaled Tags Per Million: 611.3
FF:10151-102I7 76 years, female 611.3

AMYGDALA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

248.9
Pig sample Sample description nTPM
Amygdala
nTPM: 248.9
Samples: 4

Max nTPM: 325.6
Min nTPM: 210.2
Sample A Female 325.6
Sample B Female 210.2
Sample C Male 235.8
Sample D Male 223.9

AMYGDALA - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

347.7
Mouse sample Sample description nTPM
Amygdala
nTPM: 347.7
Samples: 4

Max nTPM: 373.5
Min nTPM: 318.4
Sample A Male 373.5
Sample B Male 318.4
Sample C Female 361.8
Sample D Female 337.2

AMYGDALA - Allen Mouse ISHi

In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.

Max subtype Expression energyi

Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.

24.7
Allen experiment id Experiment description Expression energy
Cortical subplate
Expression energy: 24.7
2649 Antisense, RP_Baylor_103378, Mouse strain C57BL/6J (56 days, male) 24.7
2650 Antisense, RP_Baylor_103378, Mouse strain C57BL/6J (56 days, male) 18.8

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