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  • SUMMARY

  • TISSUE

  • BRAIN

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  • SUBCELL

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  • BLOOD

  • CELL LINE

  • STRUCTURE

  • INTERACTION

  • TPT1
TISSUE PRIMARY DATA CAUDATE Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BLOOD VESSEL BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON
DUODENUM ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN
NASOPHARYNX ORAL MUCOSA OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN
SMALL INTESTINE SMOOTH MUSCLE SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Caudate
Tissue proteome
Tissue methods
CAUDATE - Expression summary
Protein expression
Caudatei

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

h
m
l
n
Glial cells: Not detected
Neuronal cells: Not detected
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.

Scroll down to view mRNA expression data in more detail.

GTEx:2022.6 nTPM
FANTOM5:983.1 Scaled Tags Per Million
Pig:998.1 nTPM
BRAIN - SINGLE CELL RNA EXPRESSION
Explore single cell type data

CAUDATE - Antibody stainingi

Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells. Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.

Ascending and descending describe two types of gradient, based on difference in staining intensity between enterocytes in crypts and apical enterocytes.

Ascending - the staining intensity is stronger in apical enterocytes (towards the lumen) compared to enterocytes in the crypts (gland based)

Descending - the staining is weaker in apical enterocytes compared to enterocytes in crypts

Antibody HPA039437Antibody HPA073929Antibody CAB008364
Glial cells Not detectedNot detectedNot detected
Neuronal cells Not detectedMediumNot detected







CAUDATE - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

2022.6
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 2022.6
Samples: 300

Max nTPM: 5091.0
Min nTPM: 1093.5
Std nTPM: 515.2
Median nTPM: 1936.1
GTEX-14JG1-0011-R5a-SM-62LED 40-49 years, male 5091.0
GTEX-1192W-0011-R5a-SM-GI4VY 60-69 years, male 4938.5
GTEX-14JIY-0011-R5b-SM-62LE7 60-69 years, male 3930.8
GTEX-1E1VI-0011-R5b-SM-9WG5V 50-59 years, male 3683.2
GTEX-17EVP-0011-R5b-SM-7DHKW 40-49 years, male 3642.4
GTEX-11DZ1-0011-R5a-SM-DO11J 50-59 years, male 3535.9
GTEX-12WSA-0011-R5b-SM-5GU5I 60-69 years, male 3377.3
GTEX-11TTK-0011-R5a-SM-DNZZV 60-69 years, female 3249.9
GTEX-1H2FU-0011-R5b-SM-CL552 60-69 years, female 3199.6
GTEX-1IKK5-0011-R5b-SM-CL55B 60-69 years, male 3154.5
GTEX-11DYG-0011-R5a-SM-DO928 60-69 years, male 3120.0
GTEX-1LH75-0011-R5b-SM-F2TAO 50-59 years, female 3037.6
GTEX-1H3O1-0011-R5b-SM-ADEH8 60-69 years, male 3032.0
GTEX-1C6WA-0011-R5a-SM-9WG5X 60-69 years, male 2939.9
GTEX-11PRG-0011-R5b-SM-DNZZS 50-59 years, male 2914.8
GTEX-14C5O-0011-R5a-SM-G8W84 60-69 years, male 2901.8
GTEX-1F75A-0011-R5a-SM-ARZMJ 50-59 years, male 2868.7
GTEX-17HG3-0011-R5a-SM-7DUEW 30-39 years, female 2859.8
GTEX-1JMLX-0011-R5b-SM-EY5YK 50-59 years, male 2791.2
GTEX-Z93S-0011-R5b-SM-4RGNI 50-59 years, male 2738.0
GTEX-15DDE-0011-R5b-SM-7KULJ 50-59 years, female 2734.9
GTEX-144GO-0011-R5a-SM-5PNUR 60-69 years, male 2701.9
GTEX-139TT-0011-R5b-SM-5K7W8 60-69 years, male 2687.4
GTEX-NPJ7-0011-R5a-SM-33HBK 60-69 years, female 2684.3
GTEX-1R9K4-0011-R5b-SM-EZ6N8 60-69 years, male 2676.2
GTEX-1R46S-0011-R5b-SM-F342A 60-69 years, female 2648.5
GTEX-X4XX-0011-R5A-SM-46MWN 60-69 years, male 2640.7
GTEX-1GN1U-0011-R5a-SM-9QEIS 50-59 years, female 2621.1
GTEX-1NV8Z-0011-R5a-SM-G8LKX 60-69 years, male 2615.4
GTEX-1I19N-0011-R5b-SM-ARU6X 70-79 years, male 2573.1
GTEX-139T8-0011-R5b-SM-5J1MO 60-69 years, male 2570.4
GTEX-1JMQJ-0011-R5a-SM-EYYXO 50-59 years, male 2542.8
GTEX-X585-0011-R5A-SM-46MVI 50-59 years, male 2539.9
GTEX-1I1GR-0011-R5a-SM-CMKHD 60-69 years, male 2533.1
GTEX-14C39-0011-R5b-SM-5ZZV1 40-49 years, male 2531.6
GTEX-ZYFD-0011-R5a-SM-H6Q7M 50-59 years, male 2518.9
GTEX-12WSM-0011-R5a-SM-5EQ4Y 60-69 years, male 2514.6
GTEX-13CIG-0011-R5b-SM-5L3F2 50-59 years, male 2514.3
GTEX-1HT8W-0011-R5b-SM-CJI3P 30-39 years, male 2503.1
GTEX-1JN6P-0011-R5b-SM-G9EPO 60-69 years, male 2491.7
GTEX-1F75W-0011-R5b-SM-9QEGV 60-69 years, male 2482.7
GTEX-139TU-0011-R5b-SM-5L3E1 60-69 years, male 2474.7
GTEX-NL3H-0011-R5a-SM-2I3GB 60-69 years, male 2471.7
GTEX-1HBPH-0011-R5b-SM-A9G1R 40-49 years, female 2458.5
GTEX-ZAJG-0011-R5a-SM-GRR1S 50-59 years, female 2455.5
GTEX-1A8G6-0011-R5b-SM-7IGQG 60-69 years, male 2446.4
GTEX-1N2DW-0011-R5a-SM-EYYX3 50-59 years, male 2415.0
GTEX-T2IS-0011-R5A-SM-32QP4 20-29 years, female 2412.7
GTEX-12WSF-0011-R5a-SM-5HL8K 70-79 years, male 2402.1
GTEX-1HGF4-0011-R5b-SM-CM2ST 60-69 years, male 2400.8
GTEX-1I1GQ-0011-R5a-SM-CMKHJ 50-59 years, male 2397.0
GTEX-1LG7Y-0011-R5a-SM-EZ6MU 50-59 years, male 2396.3
GTEX-1H3VE-0011-R5a-SM-CKZOU 40-49 years, male 2395.1
GTEX-12WSC-0011-R5b-SM-5CVNS 50-59 years, male 2393.8
GTEX-1LB8K-0011-R5b-SM-G8OKO 50-59 years, male 2392.7
GTEX-1B933-0011-R5b-SM-7P8SA 50-59 years, female 2388.9
GTEX-13PL6-0011-R5b-SM-5O9BI 40-49 years, female 2382.3
GTEX-1HB9E-0011-R5b-SM-ARU78 50-59 years, male 2381.8
GTEX-1POEN-0011-R5b-SM-F2T9Z 30-39 years, female 2380.3
GTEX-11OF3-0011-R5a-SM-57WB4 60-69 years, male 2372.4
GTEX-ZYY3-0011-R5a-SM-H7OGH 60-69 years, female 2366.3
GTEX-1MCQQ-0011-R5b-SM-GJ3RW 60-69 years, male 2347.5
GTEX-16YQH-0011-R5b-SM-7938U 30-39 years, male 2345.6
GTEX-1MJK2-0011-R5b-SM-F3427 50-59 years, male 2345.2
GTEX-13NYB-0011-R5a-SM-5MR45 40-49 years, male 2338.4
GTEX-ZUA1-0011-R5b-SM-51MTG 40-49 years, male 2331.6
GTEX-ZE9C-0011-R5a-SM-5EGLO 60-69 years, male 2317.1
GTEX-1LKK1-0011-R5b-SM-EY5YB 50-59 years, female 2314.0
GTEX-UTHO-0011-R5A-SM-G8W6H 60-69 years, male 2313.9
GTEX-1R9PO-0011-R5a-SM-EZ6NA 60-69 years, female 2310.8
GTEX-ZF28-0011-R5a-SM-4WWCZ 60-69 years, male 2296.1
GTEX-YJ89-0011-R5a-SM-4V6GM 60-69 years, male 2294.0
GTEX-13JUV-0011-R5a-SM-5LZY5 40-49 years, female 2288.2
GTEX-11TUW-0011-R5b-SM-5BC6Q 60-69 years, male 2284.9
GTEX-1JMPZ-0011-R5b-SM-EYYWY 30-39 years, male 2280.5
GTEX-1GF9V-0011-R5a-SM-9QEI8 60-69 years, male 2275.4
GTEX-183WM-0011-R5a-SM-718A4 70-79 years, female 2273.1
GTEX-13NYS-0011-R5a-SM-5MR4D 60-69 years, male 2270.0
GTEX-1QEPI-0011-R5b-SM-F649S 60-69 years, female 2270.0
GTEX-1H1CY-0011-R5a-SM-CM2SN 60-69 years, female 2247.6
GTEX-T6MN-0011-R5A-SM-32QPD 50-59 years, male 2238.0
GTEX-1JMOU-0011-R5b-SM-EY5ZM 60-69 years, female 2229.5
GTEX-1B996-0011-R5a-SM-7P8PN 60-69 years, male 2201.6
GTEX-11H98-0011-R5b-SM-57WCF 50-59 years, male 2187.4
GTEX-14LZ3-0011-R5b-SM-5ZZV8 60-69 years, female 2178.5
GTEX-1399T-0011-R5b-SM-5IJDK 60-69 years, male 2173.5
GTEX-12126-0011-R5b-SM-GIN98 20-29 years, male 2162.6
GTEX-1192X-0011-R5a-SM-DNZZA 50-59 years, male 2160.0
GTEX-1H3NZ-0011-R5a-SM-CM2SP 60-69 years, male 2159.1
GTEX-11ONC-0011-R5b-SM-DO93I 60-69 years, male 2159.0
GTEX-1313W-0011-R5b-SM-5L3EP 50-59 years, female 2156.0
GTEX-13OVJ-0011-R5a-SM-5P9H7 50-59 years, female 2151.8
GTEX-12ZZY-0011-R5a-SM-5EGL9 60-69 years, male 2147.4
GTEX-11NV4-0011-R5a-SM-5NQ88 60-69 years, male 2141.0
GTEX-1HUB1-0011-R5a-SM-CKZOY 60-69 years, male 2127.0
GTEX-1F7RK-0011-R5b-SM-9WG5S 20-29 years, female 2126.4
GTEX-111FC-0011-R5a-SM-GIN8L 60-69 years, male 2125.4
GTEX-14E6C-0011-R5b-SM-G9ERG 40-49 years, male 2109.8
GTEX-14PN4-0011-R5a-SM-686ZV 50-59 years, male 2109.1
GTEX-XMD1-0011-R5A-SM-4AT47 60-69 years, male 2103.9
GTEX-1J8Q2-0011-R5b-SM-A9SKH 60-69 years, male 2097.8
GTEX-1MA7X-0011-R5a-SM-F341K 60-69 years, male 2094.4
GTEX-1GPI6-0011-R5a-SM-CJI2W 60-69 years, male 2092.4
GTEX-1EX96-0011-R5a-SM-ARU83 50-59 years, male 2091.3
GTEX-13RTJ-0011-R5a-SM-5P9HR 60-69 years, male 2088.8
GTEX-11ZU8-0011-R5a-SM-GJ3PY 60-69 years, male 2087.8
GTEX-16NPV-0011-R5a-SM-7EPGK 50-59 years, female 2079.0
GTEX-1477Z-0011-R5b-SM-5PNUO 60-69 years, male 2075.0
GTEX-13G51-0011-R5a-SM-5L3EB 60-69 years, male 2070.7
GTEX-11GSO-0011-R5b-SM-GJ3RA 60-69 years, male 2068.0
GTEX-1B8SF-0011-R5a-SM-79OOO 60-69 years, male 2055.3
GTEX-1H1DG-0011-R5b-SM-CJI33 70-79 years, male 2053.6
GTEX-1J1OQ-0011-R5a-SM-D3L8K 40-49 years, female 2050.9
GTEX-1E2YA-0011-R5a-SM-9QEGT 50-59 years, male 2050.8
GTEX-132Q8-0011-R5a-SM-5IJDM 60-69 years, male 2046.4
GTEX-11GS4-0011-R5a-SM-GINAF 60-69 years, male 2045.1
GTEX-1CAV2-0011-R5b-SM-9QEH4 40-49 years, female 2033.3
GTEX-14ABY-0011-R5b-SM-5SI7B 50-59 years, male 2032.6
GTEX-13O3O-0011-R5b-SM-5KM44 60-69 years, female 2028.8
GTEX-PWO3-0011-R5A-SM-2I5EZ 60-69 years, female 2026.9
GTEX-1C6VS-0011-R5a-SM-7MXU9 60-69 years, male 2023.5
GTEX-117XS-0011-R5b-SM-GJ3PP 60-69 years, male 2017.5
GTEX-1NV5F-0011-R5b-SM-F3K3I 60-69 years, female 2017.2
GTEX-13X6J-0011-R5b-SM-5PNWT 50-59 years, male 2013.1
GTEX-1IDJH-0011-R5a-SM-CE6SR 70-79 years, male 2011.4
GTEX-15UF6-0011-R5a-SM-H7OFA 70-79 years, female 2007.7
GTEX-1O9I2-0011-R5a-SM-F648P 50-59 years, male 2005.3
GTEX-17MF6-0011-R5a-SM-731BA 40-49 years, male 2005.2
GTEX-11EI6-0011-R5a-SM-GINAM 60-69 years, male 2004.8
GTEX-1EH9U-0011-R5a-SM-CJI2K 60-69 years, male 2004.1
GTEX-1A8G7-0011-R5a-SM-H7OH3 60-69 years, male 2003.1
GTEX-1I1GS-0011-R5a-SM-CKZPC 60-69 years, male 1996.0
GTEX-1AX9I-0011-R5b-SM-793DI 60-69 years, male 1994.7
GTEX-11WQC-0011-R5a-SM-5BC74 60-69 years, male 1989.2
GTEX-1HCVE-0011-R5b-SM-CKZP7 50-59 years, male 1987.6
GTEX-1HFI6-0011-R5a-SM-A9G1J 40-49 years, male 1986.5
GTEX-13FLW-0011-R5a-SM-5LZX6 50-59 years, male 1984.1
GTEX-1GN2E-0011-R5b-SM-CJI2M 60-69 years, male 1975.9
GTEX-1IGQW-0011-R5b-SM-CJI44 60-69 years, male 1969.2
GTEX-12ZZX-0011-R5a-SM-5HL89 40-49 years, female 1965.3
GTEX-13N1W-0011-R5b-SM-5MR5Q 70-79 years, male 1963.9
GTEX-12WSD-0011-R5b-SM-5CVNG 60-69 years, female 1957.9
GTEX-1HR9M-0011-R5a-SM-ARU72 60-69 years, male 1957.4
GTEX-ZXG5-0011-R5b-SM-57WBN 60-69 years, male 1956.3
GTEX-14BMV-0011-R5b-SM-62LFT 50-59 years, male 1954.3
GTEX-11UD1-0011-R5b-SM-5P9FP 40-49 years, female 1951.8
GTEX-1GZ4I-0011-R5a-SM-9OSWQ 50-59 years, male 1950.8
GTEX-17EVQ-0011-R5a-SM-7LT92 70-79 years, male 1948.3
GTEX-1GF9W-0011-R5a-SM-CKZO4 60-69 years, male 1942.3
GTEX-1CB4J-0011-R5a-SM-9WG5Y 60-69 years, male 1938.1
GTEX-1EKGG-0011-R5a-SM-9OSVQ 60-69 years, male 1934.1
GTEX-1HBPI-0011-R5a-SM-CKZOW 50-59 years, male 1929.7
GTEX-ZV68-0011-R5a-SM-4YCDW 50-59 years, female 1924.8
GTEX-WWYW-0011-R5A-SM-3NB3E 50-59 years, female 1919.3
GTEX-QVJO-0011-R5A-SM-2S1QM 60-69 years, female 1918.8
GTEX-1GMR8-0011-R5b-SM-9QEIH 50-59 years, female 1916.7
GTEX-11O72-0011-R5a-SM-DO922 40-49 years, male 1916.2
GTEX-12ZZW-0011-R5a-SM-5DUVN 50-59 years, male 1916.0
GTEX-145MH-0011-R5a-SM-5P9JT 50-59 years, male 1914.0
GTEX-Y8DK-0011-R5B-SM-4RTW6 60-69 years, male 1910.7
GTEX-13FLV-0011-R5a-SM-5LZWT 50-59 years, male 1908.5
GTEX-13OW5-0011-R5b-SM-5L3FR 60-69 years, male 1902.5
GTEX-14LLW-0011-R5b-SM-5ZZU6 70-79 years, female 1895.4
GTEX-13CZV-0011-R5a-SM-5K7XA 60-69 years, male 1882.1
GTEX-1LVAO-0011-R5a-SM-EY5Y6 60-69 years, male 1881.8
GTEX-NPJ8-0011-R5a-SM-2HMJY 40-49 years, male 1879.8
GTEX-14PJO-0011-R5a-SM-6AJBZ 60-69 years, male 1879.7
GTEX-14DAQ-0011-R5b-SM-5YYAK 60-69 years, female 1876.4
GTEX-X261-0011-R5A-SM-3NMB4 50-59 years, male 1874.3
GTEX-1EN7A-0011-R5a-SM-9QEH6 40-49 years, male 1864.2
GTEX-1C6VR-0011-R5a-SM-9QEH1 60-69 years, male 1856.1
GTEX-13X6K-0011-R5b-SM-5PNUE 60-69 years, female 1854.1
GTEX-145MG-0011-R5b-SM-5S2VU 50-59 years, male 1852.8
GTEX-14BIM-0011-R5b-SM-5S2RM 60-69 years, female 1847.8
GTEX-13X6I-0011-R5a-SM-5PNWW 60-69 years, male 1844.6
GTEX-1GZ2Q-0011-R5a-SM-A96RQ 40-49 years, male 1843.8
GTEX-1F6IF-0011-R5b-SM-CM2RH 60-69 years, male 1838.9
GTEX-T5JC-0011-R5A-SM-32PLK 20-29 years, male 1837.6
GTEX-13QJC-0011-R5a-SM-GJ3QH 60-69 years, female 1837.5
GTEX-15DYW-0011-R5a-SM-6M46W 60-69 years, female 1835.3
GTEX-11DXW-0011-R5b-SM-DO11D 40-49 years, male 1831.4
GTEX-ZAK1-0011-R5a-SM-GRR32 50-59 years, female 1826.9
GTEX-1HSKV-0011-R5b-SM-ARZLN 60-69 years, male 1823.5
GTEX-13CF2-0011-R5a-SM-5LZWS 60-69 years, male 1822.4
GTEX-1QP6S-0011-R5a-SM-F648S 40-49 years, male 1822.3
GTEX-1F48J-0011-R5b-SM-9OSVZ 50-59 years, female 1820.8
GTEX-13SLW-0011-R5b-SM-5SI6Z 70-79 years, male 1806.7
GTEX-14ASI-0011-R5b-SM-6EU2M 60-69 years, male 1806.0
GTEX-1F6I4-0011-R5b-SM-9QEHA 60-69 years, male 1803.8
GTEX-1117F-0011-R5a-SM-GI4VW 60-69 years, female 1802.4
GTEX-13FHO-0011-R5b-SM-5LZZ3 60-69 years, male 1797.7
GTEX-13SLX-0011-R5a-SM-5O9BV 50-59 years, female 1794.8
GTEX-1JMQK-0011-R5a-SM-G8LKV 60-69 years, male 1794.7
GTEX-13PVQ-0011-R5b-SM-5O9DI 50-59 years, male 1792.8
GTEX-1EMGI-0011-R5a-SM-CJI2E 60-69 years, male 1791.4
GTEX-14PQA-0011-R5b-SM-6AJC2 50-59 years, female 1782.9
GTEX-1J8JJ-0011-R5a-SM-D4P2G 60-69 years, female 1782.2
GTEX-17HII-0011-R5a-SM-7LG51 50-59 years, male 1781.9
GTEX-1CB4H-0011-R5b-SM-9QEGN 60-69 years, female 1776.6
GTEX-1LSVX-0011-R3a-SM-EXURQ 60-69 years, male 1772.3
GTEX-13VXU-0011-R5a-SM-5O9D7 50-59 years, male 1768.7
GTEX-ZVT3-0011-R5a-SM-51MSI 60-69 years, female 1768.3
GTEX-ZAB4-0011-R5a-SM-4SOKC 40-49 years, male 1766.1
GTEX-1KD4Q-0011-R5a-SM-EY5Y8 40-49 years, male 1766.0
GTEX-11DXY-0011-R5b-SM-DNZZL 60-69 years, male 1763.1
GTEX-16Z82-0011-R5a-SM-7EPGB 60-69 years, male 1761.0
GTEX-1GN73-0011-R5a-SM-9QEIM 60-69 years, male 1758.6
GTEX-1IL2U-0011-R5a-SM-CE6SN 60-69 years, male 1757.8
GTEX-YFC4-0011-R5a-SM-4RGLR 40-49 years, female 1755.5
GTEX-17F97-0011-R5a-SM-7LG4Z 50-59 years, male 1748.1
GTEX-Q2AG-0011-R5A-SM-2HMJH 40-49 years, female 1740.9
GTEX-13PLJ-0011-R5a-SM-5O9BG 60-69 years, female 1735.8
GTEX-QMR6-0011-R5A-SM-32PKT 50-59 years, male 1735.3
GTEX-1IKJJ-0011-R5b-SM-CE6SL 60-69 years, male 1734.8
GTEX-15CHQ-0011-R5b-SM-6AJAN 60-69 years, male 1723.6
GTEX-15DCD-0011-R5a-SM-CXZKZ 70-79 years, female 1720.7
GTEX-1N5O9-0011-R5a-SM-F3K46 60-69 years, male 1718.5
GTEX-13OVH-0011-R5b-SM-5KM4L 70-79 years, male 1711.1
GTEX-1RDX4-0011-R5a-SM-F33ZH 50-59 years, female 1706.3
GTEX-1IKOH-0011-R5a-SM-ARU8C 60-69 years, female 1705.3
GTEX-1HR98-0011-R5a-SM-A9G1V 60-69 years, male 1703.0
GTEX-13N2G-0011-R5a-SM-5MR33 60-69 years, male 1701.5
GTEX-145LS-0011-R5a-SM-5SI65 60-69 years, female 1695.0
GTEX-15ER7-0011-R5b-SM-6M46T 20-29 years, female 1692.1
GTEX-13NZA-0011-R5b-SM-5KM4K 60-69 years, male 1689.6
GTEX-1PIIG-0011-R5b-SM-F341S 30-39 years, male 1687.6
GTEX-WHSE-0011-R5A-SM-3P5ZO 20-29 years, male 1686.4
GTEX-1GTWX-0011-R5b-SM-CKZO6 60-69 years, male 1684.5
GTEX-1OJC4-0011-R5b-SM-F3K55 50-59 years, female 1682.4
GTEX-131YS-0011-R5b-SM-5K7YB 60-69 years, female 1675.6
GTEX-1PPGY-0011-R5a-SM-F33ZV 60-69 years, male 1675.2
GTEX-1N2EE-0011-R5a-SM-EY5YF 60-69 years, male 1671.1
GTEX-15RJE-0011-R5b-SM-H6Q7T 40-49 years, male 1669.8
GTEX-1IY9M-0011-R5a-SM-A9SLX 60-69 years, male 1665.7
GTEX-13FHP-0011-R5b-SM-5LZY2 50-59 years, male 1665.2
GTEX-1CB4G-0011-R5a-SM-CKZNM 60-69 years, male 1664.1
GTEX-S7PM-0011-R5A-SM-3NM8G 60-69 years, male 1657.3
GTEX-ZZPT-0011-R5a-SM-GPRX5 50-59 years, male 1656.6
GTEX-13FXS-0011-R5b-SM-5LZYE 50-59 years, male 1647.9
GTEX-13O3Q-0011-R5b-SM-5P9H4 50-59 years, male 1642.2
GTEX-1JMQL-0011-R5a-SM-F3424 50-59 years, female 1640.8
GTEX-1B8L1-0011-R5a-SM-7DHN5 60-69 years, male 1637.8
GTEX-1LVA9-0011-R5a-SM-F6492 50-59 years, male 1637.8
GTEX-16GPK-0011-R5b-SM-GRR3C 60-69 years, male 1636.9
GTEX-12584-0011-R5b-SM-GIN96 40-49 years, male 1636.1
GTEX-1H1ZS-0011-R5b-SM-CL53L 70-79 years, male 1635.6
GTEX-1445S-0011-R5a-SM-5PNUS 60-69 years, male 1634.9
GTEX-ZE7O-0011-R5a-SM-57WBO 50-59 years, female 1633.9
GTEX-13OW7-0011-R5b-SM-5O9DM 50-59 years, male 1626.8
GTEX-PVOW-0011-R5A-SM-32PL7 40-49 years, male 1624.7
GTEX-WVLH-0011-R5A-SM-3MJFW 50-59 years, male 1622.1
GTEX-1A3MX-0011-R5a-SM-79OM5 60-69 years, male 1618.5
GTEX-1PWST-0011-R5a-SM-F648V 70-79 years, male 1609.4
GTEX-15EO6-0011-R5b-SM-7KUDZ 50-59 years, male 1609.1
GTEX-1F52S-0011-R5a-SM-CJI22 60-69 years, female 1604.7
GTEX-15G19-0011-R5b-SM-6M46P 60-69 years, male 1602.7
GTEX-1HCU6-0011-R5a-SM-ARU76 60-69 years, female 1588.7
GTEX-1LSNL-0011-R5a-SM-F3K49 50-59 years, male 1588.4
GTEX-1P4AB-0011-R5a-SM-F3K4I 50-59 years, male 1573.3
GTEX-13JVG-0011-R5a-SM-5MR4O 60-69 years, male 1566.5
GTEX-ZVZQ-0011-R5b-SM-57WDC 60-69 years, female 1560.8
GTEX-NL4W-0011-R5a-SM-2I3GD 50-59 years, male 1557.3
GTEX-11EMC-0011-R5a-SM-GJ3PK 60-69 years, female 1554.9
GTEX-WZTO-0011-R5B-SM-3NMC5 40-49 years, male 1551.1
GTEX-11NUK-0011-R5a-SM-DO93N 50-59 years, male 1539.6
GTEX-13OVL-0011-R5b-SM-5L3FU 50-59 years, male 1518.8
GTEX-WL46-0011-R5A-SM-3LK6V 50-59 years, male 1513.3
GTEX-1QMI2-0011-R5b-SM-F3K4S 60-69 years, male 1509.6
GTEX-1N2EF-0011-R5a-SM-F3K4Y 60-69 years, male 1500.9
GTEX-1ICLZ-0011-R5a-SM-CMKHM 60-69 years, male 1500.5
GTEX-1I1GV-0011-R5b-SM-CKZPD 60-69 years, male 1488.0
GTEX-1RAZS-0011-R5b-SM-F341U 50-59 years, male 1486.9
GTEX-N7MS-0011-R5a-SM-2HMK8 60-69 years, male 1485.7
GTEX-12ZZZ-0011-R5a-SM-5EQ4M 60-69 years, male 1483.8
GTEX-14BIN-0011-R5b-SM-5SI78 50-59 years, female 1463.5
GTEX-1F75B-0011-R5a-SM-9QEHC 50-59 years, male 1460.1
GTEX-1RLM8-0011-R5a-SM-F3K4P 50-59 years, male 1454.1
GTEX-13OW6-0011-R5a-SM-5O9BK 50-59 years, male 1452.5
GTEX-13OW8-0011-R5b-SM-5L3FQ 60-69 years, male 1437.1
GTEX-ZDXO-0011-R5a-SM-4WKG5 60-69 years, male 1436.2
GTEX-1RQEC-0011-R5a-SM-F2TBK 60-69 years, male 1434.7
GTEX-11GSP-0011-R5a-SM-57WBE 60-69 years, female 1421.9
GTEX-1GMRU-0011-R5a-SM-CKZNS 50-59 years, male 1407.0
GTEX-15SHU-0011-R5a-SM-7938Q 40-49 years, female 1398.5
GTEX-13S7M-0011-R5b-SM-5P9HS 60-69 years, female 1398.1
GTEX-1IL2V-0011-R5a-SM-ARL78 70-79 years, male 1388.0
GTEX-1I1HK-0011-R5b-SM-ARU6S 60-69 years, male 1374.3
GTEX-1RQED-0011-R5b-SM-F3K56 60-69 years, male 1372.0
GTEX-1KWVE-0011-R5a-SM-G8LLB 30-39 years, male 1360.3
GTEX-14E6D-0011-R5b-SM-69LQR 50-59 years, male 1352.2
GTEX-17HHY-0011-R5b-SM-79OMZ 50-59 years, male 1336.9
GTEX-13112-0011-R5b-SM-5DUV8 50-59 years, male 1320.2
GTEX-139TS-0011-R5b-SM-5J2MZ 60-69 years, male 1318.4
GTEX-1J8EW-0011-R5b-SM-ARU8B 60-69 years, female 1299.4
GTEX-18465-0011-R5a-SM-72D5J 50-59 years, male 1282.8
GTEX-144GL-0011-R5b-SM-5PNUJ 50-59 years, male 1270.6
GTEX-QDT8-0011-R5A-SM-32PKN 30-39 years, female 1227.0
GTEX-1H23P-0011-R5a-SM-CKZOI 60-69 years, male 1197.8
GTEX-14753-0011-R5a-SM-5S2VW 60-69 years, male 1189.6
GTEX-11ZUS-0011-R5b-SM-GIN9I 30-39 years, male 1093.5
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CAUDATE - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

983.1
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 983.1
FF:10164-103B2 76 years, female 983.1

CAUDATE - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

998.1
Pig sample Sample description nTPM
Caudate
nTPM: 998.2
Samples: 4

Max nTPM: 1063.7
Min nTPM: 943.8
Sample A Female 1035.8
Sample B Female 949.3
Sample C Male 1063.7
Sample D Male 943.8

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