MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:152.8 nTPM
HPA Brain:77.1 nTPM
GTEx:152.8 nTPM
FANTOM5:148.8 Scaled Tags Per Million
BRAIN - SINGLE CELL RNA EXPRESSION

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 77.1
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 49.4
2219 Male, age 76, both hemispheres 63.1
2666 Male, age 74, left hemisphere 62.0
1827 Male, age 72, unknown 61.5
1870 Female, age 42, unknown 55.6
2411 Female, age 72, unknown 48.6
2586 Male, age 75, left hemisphere 47.3
2828 Female, age 72, unknown 43.0
1833 Male, age 53, unknown 40.0
1830 Male, age 51, unknown 39.6
2019 Male, age 18, unknown 33.4
Dorsal raphe nucleus
nTPM: 49.3
2298 Female, age 72, unknown 61.7
2047 Male, age 72, unknown 55.6
2750 Male, age 76, both hemispheres 48.1
1828 Male, age 53, unknown 45.6
2016 Female, age 72, unknown 35.4
Inferior colliculus
nTPM: 52.3
2849 Male, age 72, unknown 60.0
2097 Female, age 72, unknown 57.7
1890 Male, age 53, unknown 46.0
1848 Female, age 42, unknown 45.4
Median raphe nucleus
nTPM: 77.1
2220 Male, age 76, midline 77.1
Periaquaductal grey, anterior
nTPM: 59.3
1947 Male, age 18, unknown 61.6
2502 Female, age 75, unknown 60.4
1795 Male, age 51, unknown 55.8
Periaquaductal grey, dorsal
nTPM: 54.2
1840 Male, age 53, unknown 62.4
2850 Male, age 76, both hemispheres 60.2
1831 Male, age 72, unknown 49.2
2464 Female, age 72, unknown 45.1
Periaquaductal grey, lateral
nTPM: 46.1
2140 Male, age 76, both hemispheres 54.2
2053 Male, age 18, unknown 52.3
2272 Male, age 74, both hemispheres 31.9
Pretectal area
nTPM: 54.0
1816 Male, age 51, unknown 71.7
2224 Female, age 72, unknown 67.1
2825 Male, age 18, unknown 65.8
1944 Female, age 72, unknown 61.8
2007 Male, age 72, unknown 58.9
1815 Male, age 53, unknown 56.2
1817 Female, age 42, unknown 54.6
2316 Male, age 76, right hemisphere 41.3
2407 Male, age 75, both hemispheres 40.9
2273 Male, age 74, both hemispheres 39.3
2667 Female, age 75, unknown 36.2
Red nucleus
nTPM: 39.4
2725 Female, age 75, unknown 57.5
2503 Female, age 72, unknown 46.2
1821 Female, age 72, unknown 45.8
2584 Male, age 75, left hemisphere 43.0
1954 Female, age 42, unknown 38.7
1865 Male, age 51, unknown 36.9
2588 Male, age 74, left hemisphere 35.2
1904 Male, age 53, unknown 34.4
2227 Male, age 72, unknown 34.1
2785 Male, age 18, unknown 34.1
2769 Male, age 72, unknown 33.7
2823 Male, age 76, right hemisphere 33.7
Substantia nigra
nTPM: 53.1
1916 Female, age 42, unknown 63.7
2241 Male, age 72, unknown 62.0
1941 Male, age 53, unknown 59.1
1851 Male, age 51, unknown 55.7
1889 Female, age 72, unknown 55.6
2409 Female, age 72, unknown 53.5
2699 Male, age 18, unknown 47.0
2590 Female, age 75, unknown 46.9
2665 Male, age 74, both hemispheres 46.6
2583 Male, age 75, right hemisphere 40.6
Superior colliculus
nTPM: 46.7
1796 Male, age 53, unknown 59.8
2261 Male, age 18, unknown 55.8
1895 Male, age 76, right hemisphere 50.0
2668 Female, age 75, unknown 49.6
2087 Female, age 72, unknown 47.8
2587 Male, age 74, left hemisphere 47.4
1839 Male, age 51, unknown 46.4
2664 Male, age 75, both hemispheres 42.3
1913 Female, age 42, unknown 38.2
1995 Male, age 72, unknown 29.4
Ventral tegmental area
nTPM: 54.0
1915 Female, age 42, unknown 62.7
2218 Male, age 76, both hemispheres 58.1
2223 Female, age 72, unknown 52.4
2410 Female, age 72, unknown 52.1
1942 Male, age 51, unknown 50.2
2021 Male, age 53, unknown 48.4

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 152.8
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 152.8
Samples: 183

Max nTPM: 393.2
Min nTPM: 46.0
Std nTPM: 58.3
Median nTPM: 147.1
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 393.2
GTEX-WVLH-0011-R2A-SM-3MJFJ 50-59 years, male 345.2
GTEX-1MJK2-0011-R2b-SM-EXUS5 50-59 years, male 320.4
GTEX-WL46-0011-R2A-SM-3LK6O 50-59 years, male 306.8
GTEX-117XS-0011-R2b-SM-GI4VT 60-69 years, male 285.5
GTEX-1EMGI-0011-R2b-SM-9OSVS 60-69 years, male 284.1
GTEX-1LH75-0011-R2b-SM-EYYWQ 50-59 years, female 273.1
GTEX-15ER7-0011-R2a-SM-6M46O 20-29 years, female 270.3
GTEX-QVJO-0011-R2A-SM-2S1QK 60-69 years, female 265.1
GTEX-1313W-0011-R2a-SM-5EGLF 50-59 years, female 262.6
GTEX-1PIIG-0011-R2b-SM-F648W 30-39 years, male 248.7
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 148.8
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 148.8
FF:10158-103A5 76 years, female 148.8

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