MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:205.1 nTPM
HPA Brain:92.2 nTPM
GTEx:205.1 nTPM
FANTOM5:235.9 Scaled Tags Per Million
BRAIN - SINGLE CELL RNA EXPRESSION

MIDBRAIN - Annotated protein expression
Pending normal tissue analysis

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 92.2
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 73.4
1870 Female, age 42, unknown 81.9
2666 Male, age 74, left hemisphere 80.6
2219 Male, age 76, both hemispheres 79.4
1827 Male, age 72, unknown 78.9
2411 Female, age 72, unknown 78.0
1830 Male, age 51, unknown 71.6
1833 Male, age 53, unknown 70.9
2828 Female, age 72, unknown 69.2
2019 Male, age 18, unknown 65.4
2586 Male, age 75, left hemisphere 58.3
Dorsal raphe nucleus
nTPM: 63.9
2750 Male, age 76, both hemispheres 73.2
1828 Male, age 53, unknown 72.2
2047 Male, age 72, unknown 65.3
2016 Female, age 72, unknown 54.7
2298 Female, age 72, unknown 54.3
Inferior colliculus
nTPM: 70.2
2849 Male, age 72, unknown 87.6
1890 Male, age 53, unknown 68.6
1848 Female, age 42, unknown 65.9
2097 Female, age 72, unknown 58.6
Median raphe nucleus
nTPM: 92.2
2220 Male, age 76, midline 92.2
Periaquaductal grey, anterior
nTPM: 67.1
2502 Female, age 75, unknown 70.5
1795 Male, age 51, unknown 67.5
1947 Male, age 18, unknown 63.4
Periaquaductal grey, dorsal
nTPM: 73.9
2850 Male, age 76, both hemispheres 87.4
2464 Female, age 72, unknown 72.1
1831 Male, age 72, unknown 71.1
1840 Male, age 53, unknown 65.0
Periaquaductal grey, lateral
nTPM: 63.9
2140 Male, age 76, both hemispheres 75.1
2053 Male, age 18, unknown 59.8
2272 Male, age 74, both hemispheres 56.8
Pretectal area
nTPM: 68.4
1816 Male, age 51, unknown 76.3
1944 Female, age 72, unknown 75.9
1817 Female, age 42, unknown 75.8
1815 Male, age 53, unknown 72.1
2825 Male, age 18, unknown 71.2
2407 Male, age 75, both hemispheres 71.0
2007 Male, age 72, unknown 69.4
2316 Male, age 76, right hemisphere 63.3
2273 Male, age 74, both hemispheres 59.7
2224 Female, age 72, unknown 59.2
2667 Female, age 75, unknown 58.0
Red nucleus
nTPM: 82.7
2725 Female, age 75, unknown 114.1
2588 Male, age 74, left hemisphere 92.8
2503 Female, age 72, unknown 90.0
1865 Male, age 51, unknown 86.6
1904 Male, age 53, unknown 80.0
1821 Female, age 72, unknown 78.5
2823 Male, age 76, right hemisphere 78.4
1954 Female, age 42, unknown 78.0
2227 Male, age 72, unknown 76.6
2769 Male, age 72, unknown 76.3
2584 Male, age 75, left hemisphere 73.1
2785 Male, age 18, unknown 68.2
Substantia nigra
nTPM: 70.8
2699 Male, age 18, unknown 94.9
1916 Female, age 42, unknown 80.1
1941 Male, age 53, unknown 79.1
1889 Female, age 72, unknown 74.4
1851 Male, age 51, unknown 69.0
2241 Male, age 72, unknown 64.9
2409 Female, age 72, unknown 63.1
2583 Male, age 75, right hemisphere 61.6
2665 Male, age 74, both hemispheres 61.0
2590 Female, age 75, unknown 59.7
Superior colliculus
nTPM: 65.9
2587 Male, age 74, left hemisphere 71.7
1895 Male, age 76, right hemisphere 71.3
1913 Female, age 42, unknown 70.9
2261 Male, age 18, unknown 69.8
1796 Male, age 53, unknown 66.1
2087 Female, age 72, unknown 65.6
1839 Male, age 51, unknown 63.2
2668 Female, age 75, unknown 61.7
2664 Male, age 75, both hemispheres 59.8
1995 Male, age 72, unknown 58.8
Ventral tegmental area
nTPM: 73.7
2223 Female, age 72, unknown 91.8
2218 Male, age 76, both hemispheres 86.5
1915 Female, age 42, unknown 73.0
1942 Male, age 51, unknown 65.8
2021 Male, age 53, unknown 64.2
2410 Female, age 72, unknown 60.9

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 205.1
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 205.1
Samples: 183

Max nTPM: 401.3
Min nTPM: 127.8
Std nTPM: 47.1
Median nTPM: 193.4
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 401.3
GTEX-1N5O9-0011-R2a-SM-G8LM1 60-69 years, male 400.5
GTEX-1LKK1-0011-R2b-SM-G8OLT 50-59 years, female 369.6
GTEX-ZV68-0011-R2a-SM-4YCDK 50-59 years, female 324.2
GTEX-1I19N-0011-R2b-SM-GPRYG 70-79 years, male 322.9
GTEX-1LB8K-0011-R2a-SM-EZ6MQ 50-59 years, male 313.5
GTEX-1IGQW-0011-R2b-SM-D4P26 60-69 years, male 303.7
GTEX-UTHO-0011-R2A-SM-3GIKC 60-69 years, male 301.2
GTEX-1IDJH-0011-R2a-SM-GPI9D 70-79 years, male 294.8
GTEX-1GN1U-0011-R2a-SM-CL53A 50-59 years, female 288.7
GTEX-YJ89-0011-R2b-SM-4RGLT 60-69 years, male 284.6
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 235.9
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 235.9
FF:10158-103A5 76 years, female 235.9

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