MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:267.7 nTPM
HPA Brain:238.7 nTPM
GTEx:267.7 nTPM
FANTOM5:88.0 Scaled Tags Per Million
BRAIN - SINGLE CELL RNA EXPRESSION

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 238.7
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 130.2
2666 Male, age 74, left hemisphere 200.6
1827 Male, age 72, unknown 166.8
2219 Male, age 76, both hemispheres 162.3
2411 Female, age 72, unknown 147.6
1870 Female, age 42, unknown 139.3
1833 Male, age 53, unknown 109.7
2586 Male, age 75, left hemisphere 104.8
2828 Female, age 72, unknown 104.0
1830 Male, age 51, unknown 102.3
2019 Male, age 18, unknown 64.6
Dorsal raphe nucleus
nTPM: 158.0
2298 Female, age 72, unknown 209.2
2047 Male, age 72, unknown 192.2
2750 Male, age 76, both hemispheres 157.4
1828 Male, age 53, unknown 139.1
2016 Female, age 72, unknown 92.3
Inferior colliculus
nTPM: 143.5
2849 Male, age 72, unknown 170.7
2097 Female, age 72, unknown 161.6
1848 Female, age 42, unknown 128.2
1890 Male, age 53, unknown 113.5
Median raphe nucleus
nTPM: 238.7
2220 Male, age 76, midline 238.7
Periaquaductal grey, anterior
nTPM: 152.2
1947 Male, age 18, unknown 176.6
1795 Male, age 51, unknown 144.5
2502 Female, age 75, unknown 135.6
Periaquaductal grey, dorsal
nTPM: 137.0
2850 Male, age 76, both hemispheres 161.8
1840 Male, age 53, unknown 161.6
2464 Female, age 72, unknown 122.0
1831 Male, age 72, unknown 102.7
Periaquaductal grey, lateral
nTPM: 108.6
2140 Male, age 76, both hemispheres 121.7
2053 Male, age 18, unknown 116.2
2272 Male, age 74, both hemispheres 87.9
Pretectal area
nTPM: 128.1
2224 Female, age 72, unknown 193.8
1816 Male, age 51, unknown 165.6
2825 Male, age 18, unknown 159.6
1815 Male, age 53, unknown 138.3
1817 Female, age 42, unknown 136.9
1944 Female, age 72, unknown 136.9
2007 Male, age 72, unknown 136.8
2407 Male, age 75, both hemispheres 98.0
2316 Male, age 76, right hemisphere 95.0
2273 Male, age 74, both hemispheres 75.6
2667 Female, age 75, unknown 72.9
Red nucleus
nTPM: 83.7
2725 Female, age 75, unknown 135.5
2584 Male, age 75, left hemisphere 111.8
1821 Female, age 72, unknown 91.0
1954 Female, age 42, unknown 81.2
2503 Female, age 72, unknown 79.0
2227 Male, age 72, unknown 75.8
2588 Male, age 74, left hemisphere 73.8
2769 Male, age 72, unknown 73.2
2785 Male, age 18, unknown 72.8
1865 Male, age 51, unknown 71.9
1904 Male, age 53, unknown 71.8
2823 Male, age 76, right hemisphere 66.1
Substantia nigra
nTPM: 145.5
1916 Female, age 42, unknown 225.4
2241 Male, age 72, unknown 189.7
1851 Male, age 51, unknown 150.5
1889 Female, age 72, unknown 144.5
1941 Male, age 53, unknown 142.8
2699 Male, age 18, unknown 141.8
2409 Female, age 72, unknown 140.7
2665 Male, age 74, both hemispheres 120.8
2590 Female, age 75, unknown 111.8
2583 Male, age 75, right hemisphere 87.1
Superior colliculus
nTPM: 114.3
1796 Male, age 53, unknown 157.0
2668 Female, age 75, unknown 155.7
2261 Male, age 18, unknown 142.7
1895 Male, age 76, right hemisphere 129.1
1839 Male, age 51, unknown 126.2
2087 Female, age 72, unknown 119.4
2587 Male, age 74, left hemisphere 90.8
2664 Male, age 75, both hemispheres 84.7
1913 Female, age 42, unknown 81.4
1995 Male, age 72, unknown 55.9
Ventral tegmental area
nTPM: 155.9
2218 Male, age 76, both hemispheres 186.9
1915 Female, age 42, unknown 179.6
2410 Female, age 72, unknown 148.8
2223 Female, age 72, unknown 148.0
2021 Male, age 53, unknown 138.0
1942 Male, age 51, unknown 134.2

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 267.7
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 267.7
Samples: 183

Max nTPM: 706.0
Min nTPM: 45.3
Std nTPM: 148.8
Median nTPM: 226.6
GTEX-11NUK-0011-R2a-SM-GINAO 50-59 years, male 706.0
GTEX-1EMGI-0011-R2b-SM-9OSVS 60-69 years, male 704.4
GTEX-1LH75-0011-R2b-SM-EYYWQ 50-59 years, female 684.7
GTEX-117XS-0011-R2b-SM-GI4VT 60-69 years, male 649.4
GTEX-1313W-0011-R2a-SM-5EGLF 50-59 years, female 642.8
GTEX-15ER7-0011-R2a-SM-6M46O 20-29 years, female 637.1
GTEX-WL46-0011-R2A-SM-3LK6O 50-59 years, male 626.9
GTEX-1MJK2-0011-R2b-SM-EXUS5 50-59 years, male 618.7
GTEX-13OW7-0011-R2b-SM-H6Q8E 50-59 years, male 608.7
GTEX-1B933-0011-R2b-SM-7IGNM 50-59 years, female 580.0
GTEX-WVLH-0011-R2A-SM-3MJFJ 50-59 years, male 565.7
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 88.0
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 88.0
FF:10158-103A5 76 years, female 88.0

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