A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
4.9
nTPM
Monaco:
9.0
nTPM
Schmiedel:
29.6
TPM
B-CELLS - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
4.9
HPA sample
nTPM
Memory B-cell nTPM: 3.1
Samples: 6
Max nTPM: 4.7
Min nTPM: 1.4
P10809_1017
4.3
P10809_1025
2.0
P10809_1044
1.4
P10809_1063
3.8
P10809_1092
2.6
P10809_1105
4.7
Naive B-cell nTPM: 4.9
Samples: 6
Max nTPM: 9.5
Min nTPM: 0.3
P10809_1011
4.6
P10809_1029
3.3
P10809_1048
0.3
P10809_1067
9.5
P10809_1091
5.5
P10809_1104
6.4
B-CELLS - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
9.0
Monaco sample
nTPM
Exhausted memory B-cell nTPM: 4.4
Samples: 4
Max nTPM: 6.3
Min nTPM: 1.4
RHH5310_R3677
5.0
RHH5218_R3590
4.7
RHH5247_R3619
1.4
RHH5276_R3648
6.3
Naive B-cell nTPM: 4.5
Samples: 4
Max nTPM: 6.4
Min nTPM: 3.5
RHH5308_R3675
6.4
RHH5216_R3588
4.4
RHH5245_R3617
3.6
RHH5274_R3646
3.5
Non-switched memory B-cell nTPM: 2.4
Samples: 4
Max nTPM: 4.2
Min nTPM: 1.3
RHH5309_R3676
4.2
RHH5217_R3589
1.4
RHH5246_R3618
2.6
RHH5275_R3647
1.3
Plasmablast nTPM: 9.0
Samples: 4
Max nTPM: 10.1
Min nTPM: 8.3
RHH5312_R3679
8.3
RHH5220_R3592
10.1
RHH5249_R3621
9.0
RHH5278_R3650
8.6
Switched memory B-cell nTPM: 1.9
Samples: 4
Max nTPM: 2.2
Min nTPM: 1.7
RHH5311_R3678
2.0
RHH5219_R3591
2.2
RHH5248_R3620
1.8
RHH5277_R3649
1.7
B-CELLS - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
29.6
Schmiedel sample id
TPM
Naive B-cell TPM: 29.6
Samples: 91
Max TPM: 61.6
Min TPM: 15.9
B_CELL_NAIVE_1
61.6
B_CELL_NAIVE_2
46.7
B_CELL_NAIVE_3
46.7
B_CELL_NAIVE_4
41.1
B_CELL_NAIVE_5
38.8
B_CELL_NAIVE_6
38.7
B_CELL_NAIVE_7
38.6
B_CELL_NAIVE_8
37.8
B_CELL_NAIVE_9
37.4
B_CELL_NAIVE_10
37.3
B_CELL_NAIVE_11
36.7
B_CELL_NAIVE_12
36.3
B_CELL_NAIVE_13
35.8
B_CELL_NAIVE_14
35.8
B_CELL_NAIVE_15
35.5
B_CELL_NAIVE_16
35.5
B_CELL_NAIVE_17
35.3
B_CELL_NAIVE_18
35.2
B_CELL_NAIVE_19
35.0
B_CELL_NAIVE_20
34.4
B_CELL_NAIVE_21
34.4
B_CELL_NAIVE_22
34.3
B_CELL_NAIVE_23
34.2
B_CELL_NAIVE_24
33.9
B_CELL_NAIVE_25
33.7
B_CELL_NAIVE_26
33.7
B_CELL_NAIVE_27
33.4
B_CELL_NAIVE_28
33.3
B_CELL_NAIVE_29
33.0
B_CELL_NAIVE_30
32.6
B_CELL_NAIVE_31
32.6
B_CELL_NAIVE_32
32.5
B_CELL_NAIVE_33
32.3
B_CELL_NAIVE_34
32.1
B_CELL_NAIVE_35
32.0
B_CELL_NAIVE_36
32.0
B_CELL_NAIVE_37
31.9
B_CELL_NAIVE_38
31.4
B_CELL_NAIVE_39
31.2
B_CELL_NAIVE_40
30.8
B_CELL_NAIVE_41
30.3
B_CELL_NAIVE_42
30.1
B_CELL_NAIVE_43
29.8
B_CELL_NAIVE_44
29.6
B_CELL_NAIVE_45
29.6
B_CELL_NAIVE_46
29.5
B_CELL_NAIVE_47
29.5
B_CELL_NAIVE_48
29.0
B_CELL_NAIVE_49
28.8
B_CELL_NAIVE_50
28.7
B_CELL_NAIVE_51
28.5
B_CELL_NAIVE_52
28.4
B_CELL_NAIVE_53
28.3
B_CELL_NAIVE_54
28.2
B_CELL_NAIVE_55
27.7
B_CELL_NAIVE_56
27.4
B_CELL_NAIVE_57
27.4
B_CELL_NAIVE_58
27.1
B_CELL_NAIVE_59
27.1
B_CELL_NAIVE_60
27.0
B_CELL_NAIVE_61
26.6
B_CELL_NAIVE_62
26.5
B_CELL_NAIVE_63
25.6
B_CELL_NAIVE_64
25.5
B_CELL_NAIVE_65
25.5
B_CELL_NAIVE_66
25.4
B_CELL_NAIVE_67
25.4
B_CELL_NAIVE_68
25.2
B_CELL_NAIVE_69
24.4
B_CELL_NAIVE_70
24.0
B_CELL_NAIVE_71
23.5
B_CELL_NAIVE_72
23.5
B_CELL_NAIVE_73
23.1
B_CELL_NAIVE_74
23.1
B_CELL_NAIVE_75
22.9
B_CELL_NAIVE_76
22.4
B_CELL_NAIVE_77
21.6
B_CELL_NAIVE_78
21.4
B_CELL_NAIVE_79
21.3
B_CELL_NAIVE_80
20.7
B_CELL_NAIVE_81
20.6
B_CELL_NAIVE_82
20.5
B_CELL_NAIVE_83
20.2
B_CELL_NAIVE_84
20.0
B_CELL_NAIVE_85
19.4
B_CELL_NAIVE_86
19.3
B_CELL_NAIVE_87
19.1
B_CELL_NAIVE_88
18.8
B_CELL_NAIVE_89
18.3
B_CELL_NAIVE_90
16.8
B_CELL_NAIVE_91
15.9
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The Human Protein Atlas project is funded
