A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
11.9
nTPM
Monaco:
15.8
nTPM
Schmiedel:
193.7
TPM
MONOCYTES - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
11.9
HPA sample
nTPM
Classical monocyte nTPM: 1.0
Samples: 6
Max nTPM: 1.9
Min nTPM: 0.5
P10809_1003
0.5
P10809_1020
0.9
P10809_1039
0.5
P10809_1058
1.9
P10809_1080
1.0
P10809_1107
1.0
Intermediate monocyte nTPM: 5.1
Samples: 6
Max nTPM: 6.9
Min nTPM: 3.1
P10809_1004
6.5
P10809_1023
4.1
P10809_1042
5.3
P10809_1061
3.1
P10809_1081
6.9
P10809_1108
4.4
Non-classical monocyte nTPM: 11.9
Samples: 5
Max nTPM: 16.7
Min nTPM: 9.1
P10809_1005
10.3
P10809_1053
9.1
P10809_1072
9.9
P10809_1082
16.7
P10809_1109
13.6
MONOCYTES - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
15.8
Monaco sample
nTPM
Classical monocyte nTPM: 2.0
Samples: 4
Max nTPM: 2.7
Min nTPM: 1.4
RHH5313_R3680
1.4
RHH5221_R3593
2.1
RHH5250_R3622
2.7
RHH5279_R3651
1.7
Intermediate monocyte nTPM: 8.2
Samples: 4
Max nTPM: 13.2
Min nTPM: 3.7
RHH5314_R3681
5.4
RHH5222_R3594
3.7
RHH5251_R3623
10.5
RHH5280_R3652
13.2
Non-classical monocyte nTPM: 15.8
Samples: 4
Max nTPM: 17.2
Min nTPM: 14.0
RHH5315_R3682
14.7
RHH5223_R3595
14.0
RHH5252_R3624
17.2
RHH5281_R3653
17.2
MONOCYTES - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
193.7
Schmiedel sample id
TPM
Classical monocyte TPM: 15.9
Samples: 91
Max TPM: 28.1
Min TPM: 8.2
MONOCYTES_1
28.1
MONOCYTES_2
23.3
MONOCYTES_3
23.3
MONOCYTES_4
23.3
MONOCYTES_5
22.8
MONOCYTES_6
22.5
MONOCYTES_7
22.2
MONOCYTES_8
20.5
MONOCYTES_9
20.4
MONOCYTES_10
19.2
MONOCYTES_11
19.1
MONOCYTES_12
19.0
MONOCYTES_13
18.9
MONOCYTES_14
18.8
MONOCYTES_15
18.6
MONOCYTES_16
18.5
MONOCYTES_17
18.4
MONOCYTES_18
18.4
MONOCYTES_19
18.1
MONOCYTES_20
17.9
MONOCYTES_21
17.8
MONOCYTES_22
17.8
MONOCYTES_23
17.8
MONOCYTES_24
17.7
MONOCYTES_25
17.6
MONOCYTES_26
17.3
MONOCYTES_27
17.2
MONOCYTES_28
17.0
MONOCYTES_29
17.0
MONOCYTES_30
17.0
MONOCYTES_31
16.8
MONOCYTES_32
16.7
MONOCYTES_33
16.7
MONOCYTES_34
16.5
MONOCYTES_35
16.4
MONOCYTES_36
16.4
MONOCYTES_37
16.4
MONOCYTES_38
16.1
MONOCYTES_39
16.1
MONOCYTES_40
16.1
MONOCYTES_41
16.1
MONOCYTES_42
15.8
MONOCYTES_43
15.6
MONOCYTES_44
15.5
MONOCYTES_45
15.2
MONOCYTES_46
15.1
MONOCYTES_47
15.1
MONOCYTES_48
15.0
MONOCYTES_49
15.0
MONOCYTES_50
14.9
MONOCYTES_51
14.9
MONOCYTES_52
14.7
MONOCYTES_53
14.6
MONOCYTES_54
14.6
MONOCYTES_55
14.4
MONOCYTES_56
14.4
MONOCYTES_57
14.3
MONOCYTES_58
14.3
MONOCYTES_59
14.3
MONOCYTES_60
14.2
MONOCYTES_61
14.2
MONOCYTES_62
14.2
MONOCYTES_63
14.2
MONOCYTES_64
14.2
MONOCYTES_65
14.1
MONOCYTES_66
14.0
MONOCYTES_67
13.8
MONOCYTES_68
13.6
MONOCYTES_69
13.5
MONOCYTES_70
13.5
MONOCYTES_71
13.5
MONOCYTES_72
13.4
MONOCYTES_73
13.4
MONOCYTES_74
13.4
MONOCYTES_75
13.4
MONOCYTES_76
13.3
MONOCYTES_77
13.1
MONOCYTES_78
12.7
MONOCYTES_79
12.6
MONOCYTES_80
12.6
MONOCYTES_81
12.6
MONOCYTES_82
12.6
MONOCYTES_83
12.4
MONOCYTES_84
12.2
MONOCYTES_85
12.1
MONOCYTES_86
11.9
MONOCYTES_87
11.8
MONOCYTES_88
11.5
MONOCYTES_89
10.1
MONOCYTES_90
8.7
MONOCYTES_91
8.2
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Non-classical monocyte TPM: 193.7
Samples: 90
Max TPM: 358.1
Min TPM: 122.1
M2_1
358.1
M2_2
293.9
M2_3
280.3
M2_4
277.2
M2_5
276.5
M2_6
270.3
M2_7
261.1
M2_8
260.6
M2_9
257.1
M2_10
254.4
M2_11
247.0
M2_12
243.3
M2_13
229.9
M2_14
227.7
M2_15
226.5
M2_16
221.4
M2_17
217.5
M2_18
217.1
M2_19
214.8
M2_20
213.4
M2_21
213.1
M2_22
213.1
M2_23
213.0
M2_24
212.2
M2_25
210.4
M2_26
209.0
M2_27
208.2
M2_28
206.5
M2_29
204.9
M2_30
204.1
M2_31
203.7
M2_32
199.4
M2_33
197.8
M2_34
196.9
M2_35
196.1
M2_36
195.7
M2_37
195.2
M2_38
192.1
M2_39
192.1
M2_40
191.2
M2_41
190.9
M2_42
187.2
M2_43
187.2
M2_44
186.9
M2_45
186.7
M2_46
186.0
M2_47
185.5
M2_48
185.2
M2_49
185.2
M2_50
183.3
M2_51
182.6
M2_52
180.6
M2_53
180.6
M2_54
179.9
M2_55
178.7
M2_56
178.2
M2_57
177.6
M2_58
177.4
M2_59
177.4
M2_60
177.3
M2_61
175.7
M2_62
174.7
M2_63
174.5
M2_64
173.4
M2_65
172.8
M2_66
172.1
M2_67
171.5
M2_68
170.3
M2_69
170.0
M2_70
169.9
M2_71
168.0
M2_72
162.3
M2_73
160.9
M2_74
159.3
M2_75
159.3
M2_76
158.7
M2_77
157.7
M2_78
156.7
M2_79
156.1
M2_80
153.3
M2_81
152.6
M2_82
151.6
M2_83
145.6
M2_84
140.2
M2_85
136.6
M2_86
133.2
M2_87
128.5
M2_88
125.8
M2_89
122.2
M2_90
122.1
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