MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:52.4 nTPM
HPA Brain:75.1 nTPM
GTEx:52.4 nTPM
FANTOM5:117.3 Scaled Tags Per Million
Pig:88.5 nTPM
Mouse:178.9 nTPM
Allen mouse:1.4 Expression energy
BRAIN - SINGLE CELL RNA EXPRESSION

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 75.1
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 63.4
2019 Male, age 18, unknown 80.8
2411 Female, age 72, unknown 73.4
1827 Male, age 72, unknown 68.6
1870 Female, age 42, unknown 68.0
2666 Male, age 74, left hemisphere 59.7
1833 Male, age 53, unknown 58.8
2828 Female, age 72, unknown 58.3
1830 Male, age 51, unknown 57.2
2586 Male, age 75, left hemisphere 55.1
2219 Male, age 76, both hemispheres 54.6
Dorsal raphe nucleus
nTPM: 66.7
2298 Female, age 72, unknown 80.7
2750 Male, age 76, both hemispheres 67.4
2047 Male, age 72, unknown 65.7
1828 Male, age 53, unknown 61.9
2016 Female, age 72, unknown 57.5
Inferior colliculus
nTPM: 63.2
2097 Female, age 72, unknown 77.6
1848 Female, age 42, unknown 63.1
1890 Male, age 53, unknown 59.8
2849 Male, age 72, unknown 52.4
Median raphe nucleus
nTPM: 70.7
2220 Male, age 76, midline 70.7
Periaquaductal grey, anterior
nTPM: 70.5
1947 Male, age 18, unknown 74.5
2502 Female, age 75, unknown 70.6
1795 Male, age 51, unknown 66.2
Periaquaductal grey, dorsal
nTPM: 59.1
1840 Male, age 53, unknown 61.0
2464 Female, age 72, unknown 60.3
2850 Male, age 76, both hemispheres 59.9
1831 Male, age 72, unknown 55.1
Periaquaductal grey, lateral
nTPM: 57.9
2272 Male, age 74, both hemispheres 62.3
2053 Male, age 18, unknown 57.6
2140 Male, age 76, both hemispheres 53.7
Pretectal area
nTPM: 75.1
1816 Male, age 51, unknown 92.9
1944 Female, age 72, unknown 92.6
2007 Male, age 72, unknown 90.5
1817 Female, age 42, unknown 90.4
1815 Male, age 53, unknown 81.1
2667 Female, age 75, unknown 75.3
2273 Male, age 74, both hemispheres 71.5
2224 Female, age 72, unknown 68.1
2407 Male, age 75, both hemispheres 56.1
2825 Male, age 18, unknown 54.2
2316 Male, age 76, right hemisphere 53.1
Red nucleus
nTPM: 61.4
1821 Female, age 72, unknown 80.4
2785 Male, age 18, unknown 69.9
1954 Female, age 42, unknown 67.0
2725 Female, age 75, unknown 66.1
1865 Male, age 51, unknown 62.6
1904 Male, age 53, unknown 60.4
2823 Male, age 76, right hemisphere 58.9
2503 Female, age 72, unknown 57.4
2769 Male, age 72, unknown 57.3
2227 Male, age 72, unknown 55.2
2588 Male, age 74, left hemisphere 51.7
2584 Male, age 75, left hemisphere 50.2
Substantia nigra
nTPM: 72.9
2241 Male, age 72, unknown 93.3
1916 Female, age 42, unknown 89.0
1889 Female, age 72, unknown 85.6
1941 Male, age 53, unknown 84.3
1851 Male, age 51, unknown 77.1
2409 Female, age 72, unknown 70.5
2583 Male, age 75, right hemisphere 65.3
2590 Female, age 75, unknown 56.3
2665 Male, age 74, both hemispheres 54.0
2699 Male, age 18, unknown 53.4
Superior colliculus
nTPM: 65.4
2087 Female, age 72, unknown 77.0
2261 Male, age 18, unknown 75.7
2668 Female, age 75, unknown 73.9
2587 Male, age 74, left hemisphere 70.4
1796 Male, age 53, unknown 65.1
1913 Female, age 42, unknown 62.6
1839 Male, age 51, unknown 60.6
1895 Male, age 76, right hemisphere 59.8
1995 Male, age 72, unknown 55.8
2664 Male, age 75, both hemispheres 53.4
Ventral tegmental area
nTPM: 66.1
2410 Female, age 72, unknown 78.2
1915 Female, age 42, unknown 69.3
2218 Male, age 76, both hemispheres 67.3
2223 Female, age 72, unknown 64.2
2021 Male, age 53, unknown 58.9
1942 Male, age 51, unknown 58.7

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 52.4
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 52.4
Samples: 183

Max nTPM: 109.5
Min nTPM: 31.6
Std nTPM: 12.1
Median nTPM: 50.2
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 109.5
GTEX-15ER7-0011-R2a-SM-6M46O 20-29 years, female 96.4
GTEX-1B8L1-0011-R2a-SM-9OSVL 60-69 years, male 95.9
GTEX-13OW7-0011-R2b-SM-H6Q8E 50-59 years, male 86.0
GTEX-1313W-0011-R2a-SM-5EGLF 50-59 years, female 84.8
GTEX-117XS-0011-R2b-SM-GI4VT 60-69 years, male 82.0
GTEX-QDT8-0011-R2A-SM-32PKQ 30-39 years, female 81.0
GTEX-11DZ1-0011-R2a-SM-DNZZM 50-59 years, male 80.4
GTEX-WVLH-0011-R2A-SM-3MJFJ 50-59 years, male 80.0
GTEX-1MJK2-0011-R2b-SM-EXUS5 50-59 years, male 73.1
GTEX-1B933-0011-R2b-SM-7IGNM 50-59 years, female 72.7
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 117.3
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 117.3
FF:10158-103A5 76 years, female 117.3

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 88.5
Pig sample Sample description nTPM
Substantia nigra
nTPM: 74.6
Samples: 4

Max nTPM: 98.0
Min nTPM: 60.0
Sample A Female 98.0
Sample B Female 66.0
Sample C Male 74.4
Sample D Male 60.0
Midbrain
nTPM: 85.3
Samples: 4

Max nTPM: 111.3
Min nTPM: 73.0
Sample A Female 73.9
Sample B Female 73.0
Sample C Male 111.3
Sample D Male 82.9
Periaqueductal gray
nTPM: 71.7
Samples: 3

Max nTPM: 85.1
Min nTPM: 61.3
Sample B Female 68.7
Sample C Male 85.1
Sample D Male 61.3
Superior colliculi
nTPM: 88.5
Samples: 4

Max nTPM: 108.5
Min nTPM: 74.0
Sample A Female 91.9
Sample B Female 74.0
Sample C Male 108.5
Sample D Male 79.6

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 178.9
Mouse sample Sample description nTPM
Midbrain
nTPM: 179.0
Samples: 4

Max nTPM: 183.3
Min nTPM: 167.0
Sample A Male 167.0
Sample B Male 182.8
Sample C Female 183.3
Sample D Female 182.7

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 1.4
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 1.4
68193050 Antisense, RP_040826_01_D12, Mouse strain C57BL/6J (56 days, male) 1.4

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