MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:32.2 nTPM
HPA Brain:17.7 nTPM
GTEx:32.2 nTPM
FANTOM5:36.3 Scaled Tags Per Million
Pig:58.6 nTPM
Mouse:50.6 nTPM
Allen mouse:0.1 Expression energy
BRAIN - SINGLE CELL RNA EXPRESSION

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 17.7
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 12.9
2019 Male, age 18, unknown 19.3
2411 Female, age 72, unknown 15.1
1827 Male, age 72, unknown 14.8
1870 Female, age 42, unknown 13.1
2586 Male, age 75, left hemisphere 13.0
2666 Male, age 74, left hemisphere 12.5
2219 Male, age 76, both hemispheres 11.4
1833 Male, age 53, unknown 10.6
1830 Male, age 51, unknown 9.6
2828 Female, age 72, unknown 9.4
Dorsal raphe nucleus
nTPM: 15.4
2298 Female, age 72, unknown 22.6
1828 Male, age 53, unknown 15.8
2047 Male, age 72, unknown 14.5
2750 Male, age 76, both hemispheres 13.7
2016 Female, age 72, unknown 10.3
Inferior colliculus
nTPM: 14.2
2097 Female, age 72, unknown 20.1
1890 Male, age 53, unknown 14.9
1848 Female, age 42, unknown 11.9
2849 Male, age 72, unknown 10.0
Median raphe nucleus
nTPM: 15.5
2220 Male, age 76, midline 15.5
Periaquaductal grey, anterior
nTPM: 13.5
1947 Male, age 18, unknown 13.8
2502 Female, age 75, unknown 13.8
1795 Male, age 51, unknown 12.9
Periaquaductal grey, dorsal
nTPM: 12.0
1840 Male, age 53, unknown 14.3
2464 Female, age 72, unknown 11.7
2850 Male, age 76, both hemispheres 11.2
1831 Male, age 72, unknown 10.9
Periaquaductal grey, lateral
nTPM: 10.1
2272 Male, age 74, both hemispheres 11.0
2140 Male, age 76, both hemispheres 9.7
2053 Male, age 18, unknown 9.6
Pretectal area
nTPM: 16.1
1816 Male, age 51, unknown 23.6
2007 Male, age 72, unknown 22.9
1817 Female, age 42, unknown 21.4
1944 Female, age 72, unknown 19.3
1815 Male, age 53, unknown 17.4
2224 Female, age 72, unknown 15.3
2667 Female, age 75, unknown 14.4
2316 Male, age 76, right hemisphere 11.7
2273 Male, age 74, both hemispheres 11.3
2825 Male, age 18, unknown 10.3
2407 Male, age 75, both hemispheres 9.3
Red nucleus
nTPM: 12.2
1821 Female, age 72, unknown 17.0
2785 Male, age 18, unknown 15.4
2725 Female, age 75, unknown 13.9
2588 Male, age 74, left hemisphere 12.3
2823 Male, age 76, right hemisphere 12.2
2503 Female, age 72, unknown 11.8
1954 Female, age 42, unknown 11.4
2227 Male, age 72, unknown 11.0
2584 Male, age 75, left hemisphere 10.8
2769 Male, age 72, unknown 10.4
1865 Male, age 51, unknown 10.3
1904 Male, age 53, unknown 9.9
Substantia nigra
nTPM: 17.7
2241 Male, age 72, unknown 25.2
1916 Female, age 42, unknown 22.9
1889 Female, age 72, unknown 21.2
1851 Male, age 51, unknown 21.1
2409 Female, age 72, unknown 18.2
1941 Male, age 53, unknown 17.5
2665 Male, age 74, both hemispheres 15.1
2590 Female, age 75, unknown 12.6
2583 Male, age 75, right hemisphere 12.0
2699 Male, age 18, unknown 11.2
Superior colliculus
nTPM: 12.4
2087 Female, age 72, unknown 16.1
2668 Female, age 75, unknown 14.9
1796 Male, age 53, unknown 14.4
2261 Male, age 18, unknown 14.4
1895 Male, age 76, right hemisphere 14.1
1839 Male, age 51, unknown 10.8
2587 Male, age 74, left hemisphere 10.7
1913 Female, age 42, unknown 10.5
1995 Male, age 72, unknown 9.0
2664 Male, age 75, both hemispheres 8.7
Ventral tegmental area
nTPM: 15.0
2410 Female, age 72, unknown 18.5
2218 Male, age 76, both hemispheres 17.2
1915 Female, age 42, unknown 16.9
1942 Male, age 51, unknown 13.7
2223 Female, age 72, unknown 12.3
2021 Male, age 53, unknown 11.2

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 32.2
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 32.2
Samples: 183

Max nTPM: 62.0
Min nTPM: 16.2
Std nTPM: 8.7
Median nTPM: 31.1
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 62.0
GTEX-15ER7-0011-R2a-SM-6M46O 20-29 years, female 60.5
GTEX-1313W-0011-R2a-SM-5EGLF 50-59 years, female 57.6
GTEX-1B8L1-0011-R2a-SM-9OSVL 60-69 years, male 56.4
GTEX-13OW7-0011-R2b-SM-H6Q8E 50-59 years, male 56.3
GTEX-1EMGI-0011-R2b-SM-9OSVS 60-69 years, male 54.1
GTEX-117XS-0011-R2b-SM-GI4VT 60-69 years, male 54.0
GTEX-14C5O-0011-R2a-SM-5ZZV2 60-69 years, male 53.4
GTEX-WVLH-0011-R2A-SM-3MJFJ 50-59 years, male 52.8
GTEX-1LVAO-0011-R2a-SM-EYYX1 60-69 years, male 52.3
GTEX-14BIM-0011-R2b-SM-69LQ6 60-69 years, female 52.2
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 36.3
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 36.3
FF:10158-103A5 76 years, female 36.3

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 58.6
Pig sample Sample description nTPM
Substantia nigra
nTPM: 43.6
Samples: 4

Max nTPM: 63.8
Min nTPM: 31.5
Sample A Female 63.8
Sample B Female 33.0
Sample C Male 46.0
Sample D Male 31.5
Midbrain
nTPM: 48.2
Samples: 4

Max nTPM: 57.1
Min nTPM: 37.9
Sample A Female 43.9
Sample B Female 37.9
Sample C Male 57.1
Sample D Male 53.9
Periaqueductal gray
nTPM: 32.2
Samples: 3

Max nTPM: 38.0
Min nTPM: 25.5
Sample B Female 33.0
Sample C Male 38.0
Sample D Male 25.5
Superior colliculi
nTPM: 58.6
Samples: 4

Max nTPM: 73.9
Min nTPM: 43.0
Sample A Female 69.5
Sample B Female 43.0
Sample C Male 73.9
Sample D Male 48.1

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 50.6
Mouse sample Sample description nTPM
Midbrain
nTPM: 50.6
Samples: 4

Max nTPM: 62.6
Min nTPM: 45.4
Sample A Male 62.6
Sample B Male 47.4
Sample C Female 45.4
Sample D Female 47.0

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 0.1
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.1
80471955 Antisense, RP_070208_04_F05, Mouse strain C57BL/6J (56 days, male) 0.1

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