A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
110.7
nTPM
Monaco:
294.4
nTPM
Schmiedel:
93.3
TPM
B-CELLS - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
110.7
HPA sample
nTPM
Memory B-cell nTPM: 102.2
Samples: 6
Max nTPM: 134.0
Min nTPM: 79.5
P10809_1017
79.5
P10809_1025
98.5
P10809_1044
134.0
P10809_1063
99.7
P10809_1092
110.2
P10809_1105
91.3
Naive B-cell nTPM: 110.7
Samples: 6
Max nTPM: 172.4
Min nTPM: 71.2
P10809_1011
71.2
P10809_1029
128.1
P10809_1048
172.4
P10809_1067
94.1
P10809_1091
96.7
P10809_1104
101.7
B-CELLS - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
294.4
Monaco sample
nTPM
Exhausted memory B-cell nTPM: 184.1
Samples: 4
Max nTPM: 191.3
Min nTPM: 178.7
RHH5310_R3677
181.3
RHH5218_R3590
191.3
RHH5247_R3619
184.9
RHH5276_R3648
178.7
Naive B-cell nTPM: 180.0
Samples: 4
Max nTPM: 216.2
Min nTPM: 163.5
RHH5308_R3675
163.5
RHH5216_R3588
216.2
RHH5245_R3617
166.1
RHH5274_R3646
174.0
Non-switched memory B-cell nTPM: 193.4
Samples: 4
Max nTPM: 239.2
Min nTPM: 158.6
RHH5309_R3676
187.0
RHH5217_R3589
239.2
RHH5246_R3618
188.8
RHH5275_R3647
158.6
Plasmablast nTPM: 294.4
Samples: 4
Max nTPM: 346.2
Min nTPM: 201.5
RHH5312_R3679
201.5
RHH5220_R3592
346.2
RHH5249_R3621
342.2
RHH5278_R3650
287.7
Switched memory B-cell nTPM: 192.5
Samples: 4
Max nTPM: 226.6
Min nTPM: 153.5
RHH5311_R3678
153.5
RHH5219_R3591
188.4
RHH5248_R3620
201.5
RHH5277_R3649
226.6
B-CELLS - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
93.3
Schmiedel sample id
TPM
Naive B-cell TPM: 93.3
Samples: 91
Max TPM: 123.5
Min TPM: 72.3
B_CELL_NAIVE_1
123.5
B_CELL_NAIVE_2
119.6
B_CELL_NAIVE_3
114.7
B_CELL_NAIVE_4
112.9
B_CELL_NAIVE_5
111.9
B_CELL_NAIVE_6
110.5
B_CELL_NAIVE_7
108.6
B_CELL_NAIVE_8
108.6
B_CELL_NAIVE_9
107.3
B_CELL_NAIVE_10
106.4
B_CELL_NAIVE_11
106.4
B_CELL_NAIVE_12
105.9
B_CELL_NAIVE_13
103.3
B_CELL_NAIVE_14
103.1
B_CELL_NAIVE_15
103.1
B_CELL_NAIVE_16
102.0
B_CELL_NAIVE_17
102.0
B_CELL_NAIVE_18
101.9
B_CELL_NAIVE_19
101.7
B_CELL_NAIVE_20
101.7
B_CELL_NAIVE_21
101.3
B_CELL_NAIVE_22
100.6
B_CELL_NAIVE_23
100.0
B_CELL_NAIVE_24
99.1
B_CELL_NAIVE_25
98.8
B_CELL_NAIVE_26
98.6
B_CELL_NAIVE_27
98.3
B_CELL_NAIVE_28
98.2
B_CELL_NAIVE_29
98.1
B_CELL_NAIVE_30
97.1
B_CELL_NAIVE_31
96.9
B_CELL_NAIVE_32
96.8
B_CELL_NAIVE_33
96.6
B_CELL_NAIVE_34
96.4
B_CELL_NAIVE_35
96.3
B_CELL_NAIVE_36
96.3
B_CELL_NAIVE_37
96.2
B_CELL_NAIVE_38
96.2
B_CELL_NAIVE_39
96.0
B_CELL_NAIVE_40
94.7
B_CELL_NAIVE_41
94.2
B_CELL_NAIVE_42
94.1
B_CELL_NAIVE_43
93.9
B_CELL_NAIVE_44
93.7
B_CELL_NAIVE_45
93.6
B_CELL_NAIVE_46
93.5
B_CELL_NAIVE_47
92.8
B_CELL_NAIVE_48
92.2
B_CELL_NAIVE_49
92.0
B_CELL_NAIVE_50
92.0
B_CELL_NAIVE_51
91.7
B_CELL_NAIVE_52
90.5
B_CELL_NAIVE_53
90.2
B_CELL_NAIVE_54
89.8
B_CELL_NAIVE_55
89.8
B_CELL_NAIVE_56
89.6
B_CELL_NAIVE_57
89.1
B_CELL_NAIVE_58
89.0
B_CELL_NAIVE_59
88.9
B_CELL_NAIVE_60
88.9
B_CELL_NAIVE_61
88.8
B_CELL_NAIVE_62
88.5
B_CELL_NAIVE_63
88.1
B_CELL_NAIVE_64
87.8
B_CELL_NAIVE_65
87.3
B_CELL_NAIVE_66
87.1
B_CELL_NAIVE_67
86.8
B_CELL_NAIVE_68
86.5
B_CELL_NAIVE_69
85.6
B_CELL_NAIVE_70
85.4
B_CELL_NAIVE_71
84.9
B_CELL_NAIVE_72
84.8
B_CELL_NAIVE_73
84.8
B_CELL_NAIVE_74
84.6
B_CELL_NAIVE_75
83.9
B_CELL_NAIVE_76
83.6
B_CELL_NAIVE_77
82.0
B_CELL_NAIVE_78
81.6
B_CELL_NAIVE_79
81.5
B_CELL_NAIVE_80
81.2
B_CELL_NAIVE_81
81.0
B_CELL_NAIVE_82
80.9
B_CELL_NAIVE_83
80.8
B_CELL_NAIVE_84
80.8
B_CELL_NAIVE_85
78.7
B_CELL_NAIVE_86
78.0
B_CELL_NAIVE_87
77.7
B_CELL_NAIVE_88
75.5
B_CELL_NAIVE_89
73.0
B_CELL_NAIVE_90
72.4
B_CELL_NAIVE_91
72.3
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