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BETA
  • SUMMARY

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  • BRAIN

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  • RBM17
IMMUNE CELL B-CELLS Show tissue menu
B-CELLS DENDRITIC CELLS GRANULOCYTES MONOCYTES NK-CELLS PROGENITORS T-CELLS TOTAL PBMC
Immune cells
B-cells
Immune cell methods
B-CELLS - Expression summary
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.

Scroll down to view mRNA expression data in more detail.

HPA:110.7 nTPM
Monaco:294.4 nTPM
Schmiedel:93.3 TPM

B-CELLS - HPA RNA-seqi

The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.

Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.

110.7
HPA sample nTPM
Memory B-cell
nTPM: 102.2
Samples: 6

Max nTPM: 134.0
Min nTPM: 79.5
P10809_1017 79.5
P10809_1025 98.5
P10809_1044 134.0
P10809_1063 99.7
P10809_1092 110.2
P10809_1105 91.3
Naive B-cell
nTPM: 110.7
Samples: 6

Max nTPM: 172.4
Min nTPM: 71.2
P10809_1011 71.2
P10809_1029 128.1
P10809_1048 172.4
P10809_1067 94.1
P10809_1091 96.7
P10809_1104 101.7

B-CELLS - Monaco RNA-seqi

RNA-Seq data generated by Monaco et al is reported as average nTPM.

The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.

Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.

294.4
Monaco sample nTPM
Exhausted memory B-cell
nTPM: 184.1
Samples: 4

Max nTPM: 191.3
Min nTPM: 178.7
RHH5310_R3677 181.3
RHH5218_R3590 191.3
RHH5247_R3619 184.9
RHH5276_R3648 178.7
Naive B-cell
nTPM: 180.0
Samples: 4

Max nTPM: 216.2
Min nTPM: 163.5
RHH5308_R3675 163.5
RHH5216_R3588 216.2
RHH5245_R3617 166.1
RHH5274_R3646 174.0
Non-switched memory B-cell
nTPM: 193.4
Samples: 4

Max nTPM: 239.2
Min nTPM: 158.6
RHH5309_R3676 187.0
RHH5217_R3589 239.2
RHH5246_R3618 188.8
RHH5275_R3647 158.6
Plasmablast
nTPM: 294.4
Samples: 4

Max nTPM: 346.2
Min nTPM: 201.5
RHH5312_R3679 201.5
RHH5220_R3592 346.2
RHH5249_R3621 342.2
RHH5278_R3650 287.7
Switched memory B-cell
nTPM: 192.5
Samples: 4

Max nTPM: 226.6
Min nTPM: 153.5
RHH5311_R3678 153.5
RHH5219_R3591 188.4
RHH5248_R3620 201.5
RHH5277_R3649 226.6

B-CELLS - Schmiedel RNA-seqi

RNA-Seq data generated by Schmiedel et al is reported as average TPM.

The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.

Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.

Max subtype TPMi

Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.

93.3
Schmiedel sample id TPM
Naive B-cell
TPM: 93.3
Samples: 91

Max TPM: 123.5
Min TPM: 72.3
B_CELL_NAIVE_1 123.5
B_CELL_NAIVE_2 119.6
B_CELL_NAIVE_3 114.7
B_CELL_NAIVE_4 112.9
B_CELL_NAIVE_5 111.9
B_CELL_NAIVE_6 110.5
B_CELL_NAIVE_7 108.6
B_CELL_NAIVE_8 108.6
B_CELL_NAIVE_9 107.3
B_CELL_NAIVE_10 106.4
B_CELL_NAIVE_11 106.4
B_CELL_NAIVE_12 105.9
B_CELL_NAIVE_13 103.3
B_CELL_NAIVE_14 103.1
B_CELL_NAIVE_15 103.1
B_CELL_NAIVE_16 102.0
B_CELL_NAIVE_17 102.0
B_CELL_NAIVE_18 101.9
B_CELL_NAIVE_19 101.7
B_CELL_NAIVE_20 101.7
B_CELL_NAIVE_21 101.3
B_CELL_NAIVE_22 100.6
B_CELL_NAIVE_23 100.0
B_CELL_NAIVE_24 99.1
B_CELL_NAIVE_25 98.8
B_CELL_NAIVE_26 98.6
B_CELL_NAIVE_27 98.3
B_CELL_NAIVE_28 98.2
B_CELL_NAIVE_29 98.1
B_CELL_NAIVE_30 97.1
B_CELL_NAIVE_31 96.9
B_CELL_NAIVE_32 96.8
B_CELL_NAIVE_33 96.6
B_CELL_NAIVE_34 96.4
B_CELL_NAIVE_35 96.3
B_CELL_NAIVE_36 96.3
B_CELL_NAIVE_37 96.2
B_CELL_NAIVE_38 96.2
B_CELL_NAIVE_39 96.0
B_CELL_NAIVE_40 94.7
B_CELL_NAIVE_41 94.2
B_CELL_NAIVE_42 94.1
B_CELL_NAIVE_43 93.9
B_CELL_NAIVE_44 93.7
B_CELL_NAIVE_45 93.6
B_CELL_NAIVE_46 93.5
B_CELL_NAIVE_47 92.8
B_CELL_NAIVE_48 92.2
B_CELL_NAIVE_49 92.0
B_CELL_NAIVE_50 92.0
B_CELL_NAIVE_51 91.7
B_CELL_NAIVE_52 90.5
B_CELL_NAIVE_53 90.2
B_CELL_NAIVE_54 89.8
B_CELL_NAIVE_55 89.8
B_CELL_NAIVE_56 89.6
B_CELL_NAIVE_57 89.1
B_CELL_NAIVE_58 89.0
B_CELL_NAIVE_59 88.9
B_CELL_NAIVE_60 88.9
B_CELL_NAIVE_61 88.8
B_CELL_NAIVE_62 88.5
B_CELL_NAIVE_63 88.1
B_CELL_NAIVE_64 87.8
B_CELL_NAIVE_65 87.3
B_CELL_NAIVE_66 87.1
B_CELL_NAIVE_67 86.8
B_CELL_NAIVE_68 86.5
B_CELL_NAIVE_69 85.6
B_CELL_NAIVE_70 85.4
B_CELL_NAIVE_71 84.9
B_CELL_NAIVE_72 84.8
B_CELL_NAIVE_73 84.8
B_CELL_NAIVE_74 84.6
B_CELL_NAIVE_75 83.9
B_CELL_NAIVE_76 83.6
B_CELL_NAIVE_77 82.0
B_CELL_NAIVE_78 81.6
B_CELL_NAIVE_79 81.5
B_CELL_NAIVE_80 81.2
B_CELL_NAIVE_81 81.0
B_CELL_NAIVE_82 80.9
B_CELL_NAIVE_83 80.8
B_CELL_NAIVE_84 80.8
B_CELL_NAIVE_85 78.7
B_CELL_NAIVE_86 78.0
B_CELL_NAIVE_87 77.7
B_CELL_NAIVE_88 75.5
B_CELL_NAIVE_89 73.0
B_CELL_NAIVE_90 72.4
B_CELL_NAIVE_91 72.3
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