A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
79.2
nTPM
Monaco:
186.1
nTPM
Schmiedel:
62.8
TPM
MONOCYTES - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
79.2
HPA sample
nTPM
Classical monocyte nTPM: 78.5
Samples: 6
Max nTPM: 94.2
Min nTPM: 63.8
P10809_1003
63.8
P10809_1020
88.9
P10809_1039
94.2
P10809_1058
76.6
P10809_1080
64.6
P10809_1107
82.6
Intermediate monocyte nTPM: 79.2
Samples: 6
Max nTPM: 118.7
Min nTPM: 56.6
P10809_1004
62.2
P10809_1023
82.2
P10809_1042
73.2
P10809_1061
118.7
P10809_1081
56.6
P10809_1108
82.2
Non-classical monocyte nTPM: 62.6
Samples: 5
Max nTPM: 71.1
Min nTPM: 53.6
P10809_1005
53.6
P10809_1053
58.4
P10809_1072
71.1
P10809_1082
61.2
P10809_1109
68.7
MONOCYTES - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
186.1
Monaco sample
nTPM
Classical monocyte nTPM: 186.1
Samples: 4
Max nTPM: 206.9
Min nTPM: 165.9
RHH5313_R3680
165.9
RHH5221_R3593
206.9
RHH5250_R3622
178.5
RHH5279_R3651
193.1
Intermediate monocyte nTPM: 182.3
Samples: 4
Max nTPM: 196.4
Min nTPM: 169.8
RHH5314_R3681
169.8
RHH5222_R3594
189.4
RHH5251_R3623
196.4
RHH5280_R3652
173.6
Non-classical monocyte nTPM: 153.6
Samples: 4
Max nTPM: 176.3
Min nTPM: 128.9
RHH5315_R3682
176.3
RHH5223_R3595
128.9
RHH5252_R3624
175.4
RHH5281_R3653
133.6
MONOCYTES - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
62.8
Schmiedel sample id
TPM
Classical monocyte TPM: 62.7
Samples: 91
Max TPM: 76.7
Min TPM: 51.0
MONOCYTES_1
76.7
MONOCYTES_2
74.5
MONOCYTES_3
73.5
MONOCYTES_4
71.8
MONOCYTES_5
70.8
MONOCYTES_6
70.8
MONOCYTES_7
70.6
MONOCYTES_8
70.0
MONOCYTES_9
70.0
MONOCYTES_10
69.3
MONOCYTES_11
69.2
MONOCYTES_12
69.0
MONOCYTES_13
68.8
MONOCYTES_14
68.8
MONOCYTES_15
68.4
MONOCYTES_16
67.7
MONOCYTES_17
67.6
MONOCYTES_18
67.3
MONOCYTES_19
67.2
MONOCYTES_20
66.9
MONOCYTES_21
66.7
MONOCYTES_22
66.6
MONOCYTES_23
65.8
MONOCYTES_24
65.5
MONOCYTES_25
65.4
MONOCYTES_26
65.4
MONOCYTES_27
65.2
MONOCYTES_28
65.2
MONOCYTES_29
65.2
MONOCYTES_30
65.1
MONOCYTES_31
65.0
MONOCYTES_32
64.9
MONOCYTES_33
64.7
MONOCYTES_34
64.7
MONOCYTES_35
64.1
MONOCYTES_36
63.6
MONOCYTES_37
63.5
MONOCYTES_38
63.3
MONOCYTES_39
63.2
MONOCYTES_40
63.2
MONOCYTES_41
63.1
MONOCYTES_42
63.0
MONOCYTES_43
62.9
MONOCYTES_44
62.8
MONOCYTES_45
62.5
MONOCYTES_46
62.4
MONOCYTES_47
62.4
MONOCYTES_48
62.3
MONOCYTES_49
62.1
MONOCYTES_50
62.1
MONOCYTES_51
61.9
MONOCYTES_52
61.8
MONOCYTES_53
61.8
MONOCYTES_54
61.5
MONOCYTES_55
61.4
MONOCYTES_56
61.3
MONOCYTES_57
61.3
MONOCYTES_58
61.2
MONOCYTES_59
61.1
MONOCYTES_60
60.8
MONOCYTES_61
60.7
MONOCYTES_62
60.6
MONOCYTES_63
60.5
MONOCYTES_64
60.5
MONOCYTES_65
60.3
MONOCYTES_66
60.1
MONOCYTES_67
59.9
MONOCYTES_68
59.6
MONOCYTES_69
59.3
MONOCYTES_70
59.0
MONOCYTES_71
58.9
MONOCYTES_72
58.8
MONOCYTES_73
58.8
MONOCYTES_74
58.1
MONOCYTES_75
57.7
MONOCYTES_76
57.6
MONOCYTES_77
57.4
MONOCYTES_78
56.9
MONOCYTES_79
56.8
MONOCYTES_80
56.7
MONOCYTES_81
56.7
MONOCYTES_82
55.9
MONOCYTES_83
55.9
MONOCYTES_84
55.1
MONOCYTES_85
54.8
MONOCYTES_86
54.8
MONOCYTES_87
54.2
MONOCYTES_88
52.9
MONOCYTES_89
52.8
MONOCYTES_90
52.7
MONOCYTES_91
51.0
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Non-classical monocyte TPM: 62.5
Samples: 90
Max TPM: 80.1
Min TPM: 46.1
M2_1
80.1
M2_2
79.4
M2_3
78.9
M2_4
75.5
M2_5
75.5
M2_6
73.3
M2_7
71.8
M2_8
71.6
M2_9
71.6
M2_10
71.5
M2_11
71.4
M2_12
71.0
M2_13
70.4
M2_14
70.3
M2_15
69.6
M2_16
69.4
M2_17
68.0
M2_18
67.3
M2_19
67.1
M2_20
66.9
M2_21
66.8
M2_22
66.7
M2_23
66.7
M2_24
66.6
M2_25
66.5
M2_26
66.5
M2_27
66.4
M2_28
66.4
M2_29
66.2
M2_30
66.2
M2_31
66.1
M2_32
65.9
M2_33
65.9
M2_34
65.8
M2_35
65.4
M2_36
64.4
M2_37
64.3
M2_38
64.2
M2_39
63.7
M2_40
63.4
M2_41
63.1
M2_42
63.1
M2_43
63.1
M2_44
63.0
M2_45
62.9
M2_46
62.7
M2_47
62.7
M2_48
62.6
M2_49
62.6
M2_50
62.2
M2_51
62.1
M2_52
61.2
M2_53
60.8
M2_54
60.8
M2_55
60.6
M2_56
60.4
M2_57
60.4
M2_58
60.2
M2_59
60.0
M2_60
59.9
M2_61
59.3
M2_62
59.1
M2_63
59.0
M2_64
58.6
M2_65
58.5
M2_66
58.3
M2_67
58.1
M2_68
58.1
M2_69
57.9
M2_70
57.2
M2_71
56.8
M2_72
56.6
M2_73
56.6
M2_74
55.8
M2_75
55.6
M2_76
55.1
M2_77
54.7
M2_78
54.3
M2_79
53.7
M2_80
53.6
M2_81
52.7
M2_82
52.5
M2_83
51.7
M2_84
51.3
M2_85
51.0
M2_86
50.9
M2_87
49.4
M2_88
48.7
M2_89
47.7
M2_90
46.1
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