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BRAIN SPINAL CORD Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS
MEDULLA OBLONGATA MIDBRAIN OLFACTORY BULB PONS SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
Brain methods
SPINAL CORD - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.

Scroll down to view mRNA expression data in more detail.

Consensus:204.2 nTPM
HPA Brain:497.6 nTPM
GTEx:204.2 nTPM
FANTOM5:1635.0 Scaled Tags Per Million
Pig:57.7 nTPM
BRAIN - SINGLE CELL RNA EXPRESSION
Explore single cell type data

SPINAL CORD - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

497.6
Sample id Sample description nTPM
Cervical spinal cord, central gray
nTPM: 497.6
2048 Male, age 55, midline 684.5
1981 Female, age 72, midline 511.8
2816 Male, age 47, midline 458.8
2565 Male, age 75, midline 441.4
2194 Female, age 79, both hemispheres 391.5
Cervical spinal cord, dorsal horn
nTPM: 424.9
2296 Male, age 66, both hemispheres 534.0
2173 Female, age 72, unknown 483.8
2069 Male, age 47, both hemispheres 464.4
2721 Male, age 90, both hemispheres 423.5
1877 Male, age 55, unknown 396.7
2297 Male, age 75, both hemispheres 247.0
Cervical spinal cord, ventral horn
nTPM: 445.3
2098 Female, age 72, unknown 729.7
2809 Male, age 90, both hemispheres 499.3
2295 Male, age 66, both hemispheres 432.4
2480 Male, age 75, both hemispheres 366.7
2068 Male, age 55, unknown 334.2
2820 Female, age 79, both hemispheres 309.5

SPINAL CORD - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

204.2
GTEx sample id Sample description nTPM
Brain - Spinal cord (cervical c-1)
Average nTPM: 204.2
Samples: 204

Max nTPM: 717.2
Min nTPM: 64.9
Std nTPM: 109.2
Median nTPM: 178.6
GTEX-12696-0011-R9a-SM-GHWPX 60-69 years, male 717.2
GTEX-1JJ6O-0011-R9a-SM-EYYXP 60-69 years, male 621.9
GTEX-13OW5-0011-R9b-SM-5O9CL 60-69 years, male 603.7
GTEX-13CIG-0011-R9a-SM-5K7VU 50-59 years, male 589.1
GTEX-15DDE-0011-R9b-SM-6M46U 50-59 years, female 578.1
GTEX-1PWST-0011-R9a-SM-G8OMQ 70-79 years, male 561.4
GTEX-X4EP-0011-R9B-SM-4QASI 60-69 years, female 532.3
GTEX-1C6VQ-0011-R9a-SM-7SB85 50-59 years, male 520.3
GTEX-111VG-0011-R9b-SM-GHWOB 60-69 years, male 487.8
GTEX-1JN6P-0011-R9a-SM-G8LM9 60-69 years, male 478.1
GTEX-13NYS-0011-R9b-SM-5MR44 60-69 years, male 469.4
GTEX-14BIL-0011-R9a-SM-5SI7A 50-59 years, male 462.1
GTEX-1LKK1-0011-R9a-SM-G8OLY 50-59 years, female 413.8
GTEX-1I19N-0011-R9a-SM-CMKHN 70-79 years, male 382.2
GTEX-1CB4H-0011-R9a-SM-CKZNL 60-69 years, female 372.9
GTEX-1H1DF-0011-R9b-SM-CM2RN 40-49 years, female 360.2
GTEX-13PL6-0011-R9b-SM-5O9CH 40-49 years, female 358.7
GTEX-TSE9-0011-R9A-SM-3DB7Q 60-69 years, female 358.7
GTEX-1R46S-0011-R9a-SM-EZ6N7 60-69 years, female 336.5
GTEX-1JMOU-0011-R9b-SM-EY5YI 60-69 years, female 329.6
GTEX-1PIIG-0011-R9b-SM-G8OLU 30-39 years, male 329.2
GTEX-1H1ZS-0011-R9a-SM-CM2SO 70-79 years, male 313.8
GTEX-15SHU-0011-R9a-SM-GNIOE 40-49 years, female 311.8
GTEX-1LH75-0011-R9b-SM-EY5Y9 50-59 years, female 306.6
GTEX-1N5O9-0011-R9a-SM-G8LLD 60-69 years, male 300.2
GTEX-1269C-0011-R9b-SM-GI4WM 60-69 years, female 298.1
GTEX-1H2FU-0011-R9b-SM-CE6S4 60-69 years, female 293.2
GTEX-13JUV-0011-R9a-SM-5LZX3 40-49 years, female 288.5
GTEX-11EMC-0011-R9b-SM-DO921 60-69 years, female 279.1
GTEX-1GF9V-0011-R9a-SM-CL53K 60-69 years, male 274.6
GTEX-1O9I2-0011-R9b-SM-G8OKW 50-59 years, male 264.8
GTEX-T5JC-0011-R9A-SM-32PLV 20-29 years, male 262.7
GTEX-1J8Q2-0011-R9b-SM-GPRYH 60-69 years, male 260.5
GTEX-1JN1M-0011-R9a-SM-EZ6MR 60-69 years, female 256.4
GTEX-1J1OQ-0011-R9b-SM-GRR22 40-49 years, female 255.9
GTEX-1F52S-0011-R9a-SM-9WG62 60-69 years, female 247.8
GTEX-113JC-0011-R9a-SM-H6Q8K 50-59 years, female 246.3
GTEX-14PJO-0011-R9b-SM-62LE9 60-69 years, male 244.9
GTEX-15ER7-0011-R9b-SM-6PALF 20-29 years, female 243.4
GTEX-QDT8-0011-R9A-SM-CYPRD 30-39 years, female 242.9
GTEX-1EU9M-0011-R9a-SM-9WG61 60-69 years, male 242.5
GTEX-16XZZ-0011-R9b-SM-7DHKX 60-69 years, male 242.2
GTEX-13O1R-0011-R9b-SM-5KM33 60-69 years, male 241.3
GTEX-14BIM-0011-R9a-SM-6LLJL 60-69 years, female 240.3
GTEX-1HGF4-0011-R9a-SM-ADEH9 60-69 years, male 239.5
GTEX-1LSVX-0011-R9b-SM-G8LL2 60-69 years, male 239.3
GTEX-13QJC-0011-R9b-SM-5PNX3 60-69 years, female 236.5
GTEX-15G19-0011-R9b-SM-7KUEE 60-69 years, male 236.2
GTEX-1J8JJ-0011-R9a-SM-ACKVF 60-69 years, female 232.0
GTEX-117YW-0011-R9a-SM-GHWPQ 50-59 years, male 231.8
GTEX-1HBPM-0011-R9b-SM-ARL7C 60-69 years, female 231.2
GTEX-11WQK-0011-R9b-SM-5BC6N 50-59 years, male 231.0
GTEX-13G51-0011-R9b-SM-GHWPS 60-69 years, male 228.1
GTEX-13N2G-0011-R9b-SM-5MR4E 60-69 years, male 227.3
GTEX-1EH9U-0011-R9b-SM-9WG5T 60-69 years, male 225.6
GTEX-14E7W-0011-R9a-SM-62LE6 70-79 years, male 225.5
GTEX-16NPV-0011-R9b-SM-79ONF 50-59 years, female 222.8
GTEX-1H23P-0011-R9a-SM-CM2T1 60-69 years, male 221.2
GTEX-13CZV-0011-R9a-SM-5LZXT 60-69 years, male 221.1
GTEX-1QMI2-0011-R9a-SM-G8ON7 60-69 years, male 221.1
GTEX-1BAJH-0011-R9b-SM-7EPIQ 70-79 years, male 220.0
GTEX-OXRO-0011-R9A-SM-3NB1X 60-69 years, female 219.3
GTEX-12WSH-0011-R9b-SM-5LZUG 50-59 years, male 217.6
GTEX-OHPN-0011-R9A-SM-5TDEJ 60-69 years, female 216.6
GTEX-11NUK-0011-R9a-SM-GI4XG 50-59 years, male 215.4
GTEX-1A8G6-0011-R9a-SM-GOQZR 60-69 years, male 214.3
GTEX-XMD1-0011-R9A-SM-4AT49 60-69 years, male 212.9
GTEX-NL4W-0011-R9a-SM-2I3G1 50-59 years, male 212.8
GTEX-1RAZS-0011-R9b-SM-G8OMS 50-59 years, male 212.5
GTEX-1CAV2-0011-R9b-SM-9WG5M 40-49 years, female 209.9
GTEX-1212Z-0011-R9b-SM-GHWPM 60-69 years, male 209.1
GTEX-1RDX4-0011-R9b-SM-G8LMG 50-59 years, female 207.4
GTEX-14ABY-0011-R9a-SM-5PNZK 50-59 years, male 203.5
GTEX-1JMQJ-0011-R9b-SM-G8OKN 50-59 years, male 203.2
GTEX-1HSMO-0011-R9b-SM-CM2T2 60-69 years, male 202.4
GTEX-11ZU8-0011-R9b-SM-GHWOL 60-69 years, male 201.3
GTEX-1GN2E-0011-R9b-SM-9WG7F 60-69 years, male 199.4
GTEX-1MCQQ-0011-R9b-SM-G8OKM 60-69 years, male 198.5
GTEX-147GR-0011-R9a-SM-5S2UY 60-69 years, male 195.4
GTEX-11ZVC-0011-R9a-SM-57WC5 50-59 years, female 194.3
GTEX-11DXW-0011-R9a-SM-GHWOE 40-49 years, male 194.0
GTEX-11UD2-0011-R9b-SM-DO926 50-59 years, male 193.6
GTEX-131YS-0011-R9b-SM-5EQLY 60-69 years, female 192.8
GTEX-XLM4-0011-R9A-SM-4AT45 60-69 years, male 192.5
GTEX-1H1DG-0011-R9b-SM-ACKVB 70-79 years, male 191.9
GTEX-ZE9C-0011-R9a-SM-4WWCY 60-69 years, male 191.8
GTEX-1MJK2-0011-R9b-SM-EZ6MZ 50-59 years, male 191.2
GTEX-1LVA9-0011-R9a-SM-EYYWF 50-59 years, male 189.3
GTEX-1EKGG-0011-R9a-SM-CMKFV 60-69 years, male 188.7
GTEX-ZVZQ-0011-R9a-SM-51MRH 60-69 years, female 187.2
GTEX-13PLJ-0011-R9b-SM-5O9DV 60-69 years, female 186.9
GTEX-13QIC-0011-R9a-SM-GI4WO 60-69 years, female 186.8
GTEX-1NV8Z-0011-R9b-SM-G8OME 60-69 years, male 186.0
GTEX-13NZA-0011-R9b-SM-5MR5I 60-69 years, male 185.4
GTEX-148VJ-0011-R9b-SM-5SI77 70-79 years, male 183.7
GTEX-1GN1U-0011-R9b-SM-CMKFW 50-59 years, female 181.6
GTEX-T6MN-0011-R9A-SM-32QOZ 50-59 years, male 181.0
GTEX-16Z82-0011-R9a-SM-7DUFA 60-69 years, male 180.6
GTEX-139T4-0011-R9b-SM-5HL6S 50-59 years, female 179.2
GTEX-131XW-0011-R9a-SM-5N9EO 50-59 years, female 179.1
GTEX-1C6VS-0011-R9b-SM-9WG5W 60-69 years, male 178.8
GTEX-1H3NZ-0011-R9a-SM-ADEH7 60-69 years, male 178.8
GTEX-17EVQ-0011-R9b-SM-79OJY 70-79 years, male 178.5
GTEX-YJ89-0011-R9a-SM-4SOK7 60-69 years, male 178.0
GTEX-1HR98-0011-R9b-SM-ARL79 60-69 years, male 177.0
GTEX-1A8G7-0011-R9b-SM-7IGQH 60-69 years, male 176.2
GTEX-11GSO-0011-R9b-SM-GI4VN 60-69 years, male 175.8
GTEX-1JMQL-0011-R9b-SM-G8LLH 50-59 years, female 170.6
GTEX-11ZTS-0011-R9b-SM-DO93Q 60-69 years, female 168.8
GTEX-11ONC-0011-R9b-SM-5NQ8J 60-69 years, male 168.2
GTEX-13FXS-0011-R9a-SM-5K7UI 50-59 years, male 168.0
GTEX-1F88F-0011-R9b-SM-9WG7L 60-69 years, female 165.5
GTEX-15DYW-0011-R9b-SM-6PALB 60-69 years, female 164.3
GTEX-12584-0011-R9b-SM-GI4WC 40-49 years, male 163.8
GTEX-13RTJ-0011-R9a-SM-5Q5AY 60-69 years, male 163.5
GTEX-1I1GV-0011-R9b-SM-ARZLE 60-69 years, male 163.4
GTEX-1RQEC-0011-R9a-SM-EZ6N3 60-69 years, male 161.9
GTEX-14JIY-0011-R9a-SM-6EU34 60-69 years, male 160.3
GTEX-117XS-0011-R9b-SM-GHWOG 60-69 years, male 159.8
GTEX-13PVQ-0011-R9b-SM-5LU3B 50-59 years, male 159.6
GTEX-1JMPZ-0011-R9a-SM-G8OLH 30-39 years, male 157.7
GTEX-ZF28-0011-R9a-SM-4WWDY 60-69 years, male 157.4
GTEX-11GSP-0011-R9b-SM-5NQ77 60-69 years, female 157.2
GTEX-13S7M-0011-R9a-SM-5O9DW 60-69 years, female 156.3
GTEX-1IY9M-0011-R9b-SM-D3L8J 60-69 years, male 155.8
GTEX-1LSNL-0011-R9b-SM-EYYWK 50-59 years, male 155.8
GTEX-YFC4-0011-R9a-SM-4SOK4 40-49 years, female 155.5
GTEX-ZZPT-0011-R9a-SM-GOQYS 50-59 years, male 154.5
GTEX-1192X-0011-R9b-SM-DO934 50-59 years, male 154.1
GTEX-12WSC-0011-R9a-SM-5GU4U 50-59 years, male 154.0
GTEX-1GF9W-0011-R9b-SM-9WG7J 60-69 years, male 153.7
GTEX-11DZ1-0011-R9a-SM-DO933 50-59 years, male 151.6
GTEX-1POEN-0011-R9b-SM-G8LL1 30-39 years, female 151.3
GTEX-13112-0011-R9b-SM-GHWOV 50-59 years, male 151.2
GTEX-1LG7Y-0011-R9a-SM-G8LMA 50-59 years, male 150.5
GTEX-ZV68-0011-R9b-SM-GNTB9 50-59 years, female 150.3
GTEX-1GZ4I-0011-R9b-SM-B2LY8 50-59 years, male 149.4
GTEX-NPJ7-0011-R9a-SM-G8W5X 60-69 years, female 148.9
GTEX-11NV4-0011-R9a-SM-GHWPP 60-69 years, male 148.0
GTEX-145LU-0011-R9b-SM-5SI66 50-59 years, male 147.2
GTEX-13FTY-0011-R9b-SM-5KM2U 40-49 years, female 145.1
GTEX-1KD4Q-0011-R9a-SM-G8LLU 40-49 years, male 143.5
GTEX-1QP6S-0011-R9a-SM-G8LMO 40-49 years, male 143.1
GTEX-13X6I-0011-R9b-SM-5PNZJ 60-69 years, male 143.0
GTEX-1HBPH-0011-R9a-SM-CMKH3 40-49 years, female 142.6
GTEX-1LVAO-0011-R9a-SM-EZ6MY 60-69 years, male 141.0
GTEX-13N1W-0011-R9b-SM-5MR4R 70-79 years, male 140.1
GTEX-ZAB4-0011-R9a-SM-4SOKG 40-49 years, male 140.1
GTEX-16GPK-0011-R9a-SM-GPI9P 60-69 years, male 139.8
GTEX-1IGQW-0011-R9b-SM-D4P25 60-69 years, male 139.7
GTEX-1LB8K-0011-R9a-SM-EZ6MP 50-59 years, male 139.3
GTEX-1EWIQ-0011-R9a-SM-ARL8L 70-79 years, female 135.9
GTEX-13SLX-0011-R9b-SM-5SI6X 50-59 years, female 135.8
GTEX-1B933-0011-R9a-SM-79OOR 50-59 years, female 135.8
GTEX-1J8EW-0011-R9b-SM-D4P2F 60-69 years, female 135.4
GTEX-1IDJH-0011-R9a-SM-ADEIN 70-79 years, male 134.5
GTEX-13VXU-0011-R9b-SM-5SI73 50-59 years, male 134.4
GTEX-1IKJJ-0011-R9a-SM-ARZLI 60-69 years, male 134.1
GTEX-1IL2U-0011-R9a-SM-GPRYC 60-69 years, male 133.9
GTEX-1GZ2Q-0011-R9a-SM-9WG7A 40-49 years, male 133.6
GTEX-1B8L1-0011-R9b-SM-9WG5U 60-69 years, male 132.6
GTEX-1KANB-0011-R9b-SM-EZ6MO 50-59 years, male 131.5
GTEX-WVLH-0011-R9A-SM-H7OHH 50-59 years, male 130.3
GTEX-14BIN-0011-R9a-SM-5SI76 50-59 years, female 130.2
GTEX-1GZHY-0011-R9a-SM-9WG5R 50-59 years, female 129.5
GTEX-15EO6-0011-R9a-SM-6PALG 50-59 years, male 129.2
GTEX-14JFF-0011-R9b-SM-G9ERJ 60-69 years, male 128.9
GTEX-1H3O1-0011-R9b-SM-CM2SQ 60-69 years, male 128.1
GTEX-1HBPI-0011-R9b-SM-ARL76 50-59 years, male 128.1
GTEX-1JMLX-0011-R9a-SM-EYYXM 50-59 years, male 128.0
GTEX-15CHQ-0011-R9a-SM-6LLHX 60-69 years, male 127.6
GTEX-1CAMQ-0011-R9a-SM-9WG5Z 40-49 years, male 127.6
GTEX-15DCD-0011-R9b-SM-7KUED 70-79 years, female 127.3
GTEX-13NYB-0011-R9b-SM-5MR5P 40-49 years, male 126.9
GTEX-12126-0011-R9b-SM-5BC6P 20-29 years, male 126.1
GTEX-14PN4-0011-R9a-SM-6LLH9 50-59 years, male 125.1
GTEX-11ZUS-0011-R9b-SM-5BC76 30-39 years, male 121.3
GTEX-13OVJ-0011-R9b-SM-5L3GD 50-59 years, female 120.5
GTEX-1I1GS-0011-R9b-SM-CMKHF 60-69 years, male 119.8
GTEX-1A32A-0011-R9b-SM-7MGXD 50-59 years, female 116.2
GTEX-1ICLZ-0011-R9a-SM-ARL7E 60-69 years, male 114.8
GTEX-1HFI6-0011-R9b-SM-CMKH4 40-49 years, male 112.5
GTEX-ZAJG-0011-R9a-SM-GNTAY 50-59 years, female 112.1
GTEX-1PPGY-0011-R9a-SM-G8LMR 60-69 years, male 111.6
GTEX-14PJM-0011-R9b-SM-6EU35 50-59 years, female 110.2
GTEX-13SLW-0011-R9a-SM-5O9BT 70-79 years, male 109.9
GTEX-1OJC4-0011-R9a-SM-EZ6N1 50-59 years, female 109.8
GTEX-12WSD-0011-R9a-SM-5GU6W 60-69 years, female 109.5
GTEX-1R9PO-0011-R9a-SM-G8LKP 60-69 years, female 109.1
GTEX-14E6C-0011-R9a-SM-6EU33 40-49 years, male 104.1
GTEX-15UF6-0011-R9b-SM-GOQZG 70-79 years, female 103.6
GTEX-1I1HK-0011-R9a-SM-CMKHK 60-69 years, male 102.8
GTEX-QVJO-0011-R9A-SM-2S1QH 60-69 years, female 98.5
GTEX-139UW-0011-R9b-SM-5LZYT 60-69 years, male 98.2
GTEX-13OVL-0011-R9a-SM-5P9GX 50-59 years, male 96.9
GTEX-1GTWX-0011-R9a-SM-ADEH4 60-69 years, male 96.1
GTEX-14BMV-0011-R9b-SM-5ZZUA 50-59 years, male 93.1
GTEX-12WSI-0011-R9b-SM-GHWOU 50-59 years, male 87.9
GTEX-PWO3-0011-R9A-SM-EVR2V 60-69 years, female 84.6
GTEX-WL46-0011-R9A-SM-3MJFP 50-59 years, male 75.9
GTEX-13FLV-0011-R9b-SM-5L3DA 50-59 years, male 69.0
GTEX-1GN73-0011-R9a-SM-CKZO5 60-69 years, male 68.0
GTEX-1I1CD-0011-R9a-SM-CMKHB 60-69 years, female 67.4
GTEX-1F6I4-0011-R9a-SM-CMKFU 60-69 years, male 64.9
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SPINAL CORD - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

1635.0
FANTOM5 sample id Sample description Scaled Tags Per Million
Spinal cord
Scaled Tags Per Million: 1635.0
FF:10159-103A6 76 years, female 2019.2
FF:10181-103D1 60 years, female 1250.8

SPINAL CORD - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

57.7
Pig sample Sample description nTPM
Dorsal spinal cord
nTPM: 54.0
Samples: 4

Max nTPM: 59.9
Min nTPM: 39.3
Sample A Female 59.4
Sample B Female 57.3
Sample C Male 39.3
Sample D Male 59.9
Ventral spinal cord
nTPM: 57.8
Samples: 4

Max nTPM: 61.8
Min nTPM: 54.4
Sample A Female 61.8
Sample B Female 60.0
Sample C Male 54.4
Sample D Male 54.8

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