MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:98.1 nTPM
HPA Brain:152.0 nTPM
GTEx:98.1 nTPM
FANTOM5:48.3 Scaled Tags Per Million
Pig:46.1 nTPM
Mouse:29.3 nTPM
Allen mouse:0.0 Expression energy
BRAIN - SINGLE CELL RNA EXPRESSION

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 152.0
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 100.2
2219 Male, age 76, both hemispheres 129.2
2411 Female, age 72, unknown 106.9
2019 Male, age 18, unknown 106.8
1833 Male, age 53, unknown 106.0
2666 Male, age 74, left hemisphere 100.2
2586 Male, age 75, left hemisphere 96.7
1870 Female, age 42, unknown 91.5
1830 Male, age 51, unknown 90.5
1827 Male, age 72, unknown 89.7
2828 Female, age 72, unknown 84.8
Dorsal raphe nucleus
nTPM: 119.9
2047 Male, age 72, unknown 153.8
2750 Male, age 76, both hemispheres 126.7
2298 Female, age 72, unknown 120.9
1828 Male, age 53, unknown 110.2
2016 Female, age 72, unknown 88.0
Inferior colliculus
nTPM: 90.3
1890 Male, age 53, unknown 94.4
2849 Male, age 72, unknown 89.9
1848 Female, age 42, unknown 88.6
2097 Female, age 72, unknown 88.4
Median raphe nucleus
nTPM: 146.0
2220 Male, age 76, midline 146.0
Periaquaductal grey, anterior
nTPM: 92.9
1947 Male, age 18, unknown 98.6
2502 Female, age 75, unknown 93.6
1795 Male, age 51, unknown 86.5
Periaquaductal grey, dorsal
nTPM: 92.0
2850 Male, age 76, both hemispheres 104.7
1840 Male, age 53, unknown 97.5
1831 Male, age 72, unknown 87.0
2464 Female, age 72, unknown 78.6
Periaquaductal grey, lateral
nTPM: 82.1
2140 Male, age 76, both hemispheres 86.3
2272 Male, age 74, both hemispheres 82.6
2053 Male, age 18, unknown 77.3
Pretectal area
nTPM: 96.6
1817 Female, age 42, unknown 113.8
2007 Male, age 72, unknown 111.9
1944 Female, age 72, unknown 111.5
1815 Male, age 53, unknown 105.6
1816 Male, age 51, unknown 102.9
2224 Female, age 72, unknown 91.6
2407 Male, age 75, both hemispheres 91.0
2667 Female, age 75, unknown 88.5
2825 Male, age 18, unknown 82.7
2316 Male, age 76, right hemisphere 82.1
2273 Male, age 74, both hemispheres 81.3
Red nucleus
nTPM: 86.2
1821 Female, age 72, unknown 106.6
2584 Male, age 75, left hemisphere 102.1
2785 Male, age 18, unknown 96.7
1865 Male, age 51, unknown 87.7
2588 Male, age 74, left hemisphere 84.3
2725 Female, age 75, unknown 83.9
2823 Male, age 76, right hemisphere 81.8
2769 Male, age 72, unknown 80.0
2503 Female, age 72, unknown 79.1
2227 Male, age 72, unknown 79.0
1904 Male, age 53, unknown 77.7
1954 Female, age 42, unknown 75.6
Substantia nigra
nTPM: 152.0
1916 Female, age 42, unknown 233.2
1851 Male, age 51, unknown 186.9
2241 Male, age 72, unknown 167.1
1941 Male, age 53, unknown 166.9
2699 Male, age 18, unknown 163.9
2665 Male, age 74, both hemispheres 135.6
2409 Female, age 72, unknown 130.5
1889 Female, age 72, unknown 125.9
2583 Male, age 75, right hemisphere 110.5
2590 Female, age 75, unknown 99.2
Superior colliculus
nTPM: 95.2
2668 Female, age 75, unknown 152.0
1895 Male, age 76, right hemisphere 104.1
1796 Male, age 53, unknown 97.0
2087 Female, age 72, unknown 96.8
2664 Male, age 75, both hemispheres 93.6
1839 Male, age 51, unknown 90.8
2587 Male, age 74, left hemisphere 90.1
2261 Male, age 18, unknown 80.1
1913 Female, age 42, unknown 74.1
1995 Male, age 72, unknown 73.5
Ventral tegmental area
nTPM: 133.1
2218 Male, age 76, both hemispheres 166.6
1915 Female, age 42, unknown 155.4
2410 Female, age 72, unknown 143.5
2223 Female, age 72, unknown 118.8
1942 Male, age 51, unknown 113.9
2021 Male, age 53, unknown 100.5

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 98.1
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 98.1
Samples: 183

Max nTPM: 268.3
Min nTPM: 50.8
Std nTPM: 41.0
Median nTPM: 83.5
GTEX-117XS-0011-R2b-SM-GI4VT 60-69 years, male 268.3
GTEX-1B8L1-0011-R2a-SM-9OSVL 60-69 years, male 236.9
GTEX-1313W-0011-R2a-SM-5EGLF 50-59 years, female 227.4
GTEX-13OW7-0011-R2b-SM-H6Q8E 50-59 years, male 223.8
GTEX-11NUK-0011-R2a-SM-GINAO 50-59 years, male 218.5
GTEX-1EMGI-0011-R2b-SM-9OSVS 60-69 years, male 214.2
GTEX-15ER7-0011-R2a-SM-6M46O 20-29 years, female 199.6
GTEX-13O3Q-0011-R2b-SM-5KM3K 50-59 years, male 198.2
GTEX-1GN73-0011-R2a-SM-CJI2V 60-69 years, male 191.2
GTEX-1PPGY-0011-R2b-SM-F33YW 60-69 years, male 188.8
GTEX-1B933-0011-R2b-SM-7IGNM 50-59 years, female 186.3
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 48.3
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 48.3
FF:10158-103A5 76 years, female 48.3

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 46.1
Pig sample Sample description nTPM
Substantia nigra
nTPM: 46.1
Samples: 4

Max nTPM: 60.8
Min nTPM: 31.3
Sample A Female 59.9
Sample B Female 31.3
Sample C Male 60.8
Sample D Male 32.4
Midbrain
nTPM: 42.9
Samples: 4

Max nTPM: 53.3
Min nTPM: 35.4
Sample A Female 43.8
Sample B Female 35.4
Sample C Male 53.3
Sample D Male 38.9
Periaqueductal gray
nTPM: 31.3
Samples: 3

Max nTPM: 37.1
Min nTPM: 28.1
Sample B Female 28.1
Sample C Male 37.1
Sample D Male 28.6
Superior colliculi
nTPM: 42.0
Samples: 4

Max nTPM: 55.0
Min nTPM: 24.6
Sample A Female 45.6
Sample B Female 24.6
Sample C Male 55.0
Sample D Male 42.8

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 29.3
Mouse sample Sample description nTPM
Midbrain
nTPM: 29.4
Samples: 4

Max nTPM: 30.7
Min nTPM: 27.7
Sample A Male 27.7
Sample B Male 29.7
Sample C Female 30.7
Sample D Female 29.3

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 0.0
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.0
71147834 Antisense, RP_050719_02_E02, Mouse strain C57BL/6J (56 days, male) 0.0

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