MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:41.3 nTPM
HPA Brain:199.0 nTPM
GTEx:41.3 nTPM
FANTOM5:105.8 Scaled Tags Per Million
Pig:183.2 nTPM
Mouse:1.6 nTPM
Allen mouse:2.8 Expression energy
BRAIN - SINGLE CELL RNA EXPRESSION

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 199.0
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 54.7
2586 Male, age 75, left hemisphere 108.3
2828 Female, age 72, unknown 104.9
1870 Female, age 42, unknown 91.1
1827 Male, age 72, unknown 70.9
2666 Male, age 74, left hemisphere 44.0
2411 Female, age 72, unknown 38.1
1830 Male, age 51, unknown 28.3
1833 Male, age 53, unknown 26.9
2019 Male, age 18, unknown 18.3
2219 Male, age 76, both hemispheres 16.5
Dorsal raphe nucleus
nTPM: 86.2
2016 Female, age 72, unknown 147.1
1828 Male, age 53, unknown 85.0
2298 Female, age 72, unknown 84.9
2047 Male, age 72, unknown 77.8
2750 Male, age 76, both hemispheres 36.4
Inferior colliculus
nTPM: 69.3
2097 Female, age 72, unknown 82.6
1848 Female, age 42, unknown 77.8
2849 Male, age 72, unknown 70.7
1890 Male, age 53, unknown 46.3
Median raphe nucleus
nTPM: 54.4
2220 Male, age 76, midline 54.4
Periaquaductal grey, anterior
nTPM: 100.9
1795 Male, age 51, unknown 178.2
2502 Female, age 75, unknown 91.7
1947 Male, age 18, unknown 32.9
Periaquaductal grey, dorsal
nTPM: 141.4
1831 Male, age 72, unknown 197.1
1840 Male, age 53, unknown 185.5
2850 Male, age 76, both hemispheres 118.1
2464 Female, age 72, unknown 65.1
Periaquaductal grey, lateral
nTPM: 199.0
2053 Male, age 18, unknown 389.6
2140 Male, age 76, both hemispheres 106.4
2272 Male, age 74, both hemispheres 101.0
Pretectal area
nTPM: 83.0
2273 Male, age 74, both hemispheres 184.2
2407 Male, age 75, both hemispheres 117.6
2825 Male, age 18, unknown 112.4
2316 Male, age 76, right hemisphere 93.3
2667 Female, age 75, unknown 84.8
2224 Female, age 72, unknown 83.3
1815 Male, age 53, unknown 78.3
1944 Female, age 72, unknown 68.4
1816 Male, age 51, unknown 42.8
1817 Female, age 42, unknown 32.6
2007 Male, age 72, unknown 15.0
Red nucleus
nTPM: 25.3
2584 Male, age 75, left hemisphere 77.6
2725 Female, age 75, unknown 60.2
2503 Female, age 72, unknown 30.9
2769 Male, age 72, unknown 22.7
2227 Male, age 72, unknown 21.6
2823 Male, age 76, right hemisphere 20.3
2785 Male, age 18, unknown 19.0
1821 Female, age 72, unknown 14.9
1865 Male, age 51, unknown 12.6
1954 Female, age 42, unknown 8.8
2588 Male, age 74, left hemisphere 7.8
1904 Male, age 53, unknown 7.6
Substantia nigra
nTPM: 52.6
2699 Male, age 18, unknown 93.0
2583 Male, age 75, right hemisphere 79.6
1941 Male, age 53, unknown 70.8
1851 Male, age 51, unknown 55.5
2590 Female, age 75, unknown 45.8
2409 Female, age 72, unknown 45.7
2241 Male, age 72, unknown 40.9
2665 Male, age 74, both hemispheres 35.7
1916 Female, age 42, unknown 32.9
1889 Female, age 72, unknown 26.3
Superior colliculus
nTPM: 101.8
1913 Female, age 42, unknown 209.9
2664 Male, age 75, both hemispheres 200.5
1995 Male, age 72, unknown 131.4
2587 Male, age 74, left hemisphere 109.7
1796 Male, age 53, unknown 104.1
1839 Male, age 51, unknown 87.8
2087 Female, age 72, unknown 76.9
2261 Male, age 18, unknown 63.0
2668 Female, age 75, unknown 19.9
1895 Male, age 76, right hemisphere 15.1
Ventral tegmental area
nTPM: 106.0
2021 Male, age 53, unknown 164.2
1915 Female, age 42, unknown 151.9
1942 Male, age 51, unknown 131.9
2223 Female, age 72, unknown 77.4
2218 Male, age 76, both hemispheres 61.0
2410 Female, age 72, unknown 49.6

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 41.3
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 41.3
Samples: 183

Max nTPM: 369.0
Min nTPM: 3.4
Std nTPM: 42.0
Median nTPM: 29.6
GTEX-1LVAO-0011-R2a-SM-EYYX1 60-69 years, male 369.0
GTEX-1JMQK-0011-R2a-SM-EYYXQ 60-69 years, male 225.8
GTEX-1F48J-0011-R2a-SM-CL535 50-59 years, female 214.0
GTEX-14BIM-0011-R2b-SM-69LQ6 60-69 years, female 170.9
GTEX-1LH75-0011-R2b-SM-EYYWQ 50-59 years, female 133.1
GTEX-132Q8-0011-R2b-SM-5EQ5Z 60-69 years, male 123.9
GTEX-1IGQW-0011-R2b-SM-D4P26 60-69 years, male 118.8
GTEX-1B8SG-0011-R2b-SM-79OOT 50-59 years, male 112.6
GTEX-1H3O1-0011-R2b-SM-CKZOT 60-69 years, male 110.8
GTEX-13NYS-0011-R2b-SM-5MR4G 60-69 years, male 110.1
GTEX-1H1DG-0011-R2a-SM-ADEIQ 70-79 years, male 92.2
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 105.8
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 105.8
FF:10158-103A5 76 years, female 105.8

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 183.2
Pig sample Sample description nTPM
Substantia nigra
nTPM: 72.9
Samples: 4

Max nTPM: 142.4
Min nTPM: 42.1
Sample A Female 142.4
Sample B Female 42.1
Sample C Male 48.7
Sample D Male 58.4
Midbrain
nTPM: 183.2
Samples: 4

Max nTPM: 645.9
Min nTPM: 3.0
Sample A Female 645.9
Sample B Female 3.0
Sample C Male 60.1
Sample D Male 23.6
Periaqueductal gray
nTPM: 13.6
Samples: 3

Max nTPM: 21.9
Min nTPM: 5.6
Sample B Female 5.6
Sample C Male 13.3
Sample D Male 21.9
Superior colliculi
nTPM: 58.2
Samples: 4

Max nTPM: 107.1
Min nTPM: 17.3
Sample A Female 107.1
Sample B Female 17.3
Sample C Male 53.8
Sample D Male 54.7

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 1.6
Mouse sample Sample description nTPM
Midbrain
nTPM: 1.6
Samples: 4

Max nTPM: 1.7
Min nTPM: 1.5
Sample A Male 1.5
Sample B Male 1.7
Sample C Female 1.6
Sample D Female 1.7

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 2.8
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 2.8
1662 Antisense, RP_040507_02_F08, Mouse strain C57BL/6J (56 days, male) 2.8
1661 Antisense, RP_040507_02_F08, Mouse strain C57BL/6J (56 days, male) 1.2

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