MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:21.2 nTPM
HPA Brain:117.1 nTPM
GTEx:21.2 nTPM
FANTOM5:138.5 Scaled Tags Per Million
Pig:132.9 nTPM
Mouse:29.1 nTPM
Allen mouse:5.9 Expression energy
BRAIN - SINGLE CELL RNA EXPRESSION

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 117.1
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 83.9
2019 Male, age 18, unknown 110.6
2586 Male, age 75, left hemisphere 103.4
2828 Female, age 72, unknown 95.0
1827 Male, age 72, unknown 92.4
1870 Female, age 42, unknown 77.0
2219 Male, age 76, both hemispheres 75.0
1830 Male, age 51, unknown 73.8
1833 Male, age 53, unknown 72.8
2411 Female, age 72, unknown 72.3
2666 Male, age 74, left hemisphere 66.3
Dorsal raphe nucleus
nTPM: 85.5
1828 Male, age 53, unknown 92.4
2016 Female, age 72, unknown 92.2
2047 Male, age 72, unknown 87.3
2298 Female, age 72, unknown 86.4
2750 Male, age 76, both hemispheres 69.2
Inferior colliculus
nTPM: 90.6
1848 Female, age 42, unknown 96.5
2097 Female, age 72, unknown 96.5
1890 Male, age 53, unknown 93.3
2849 Male, age 72, unknown 76.0
Median raphe nucleus
nTPM: 71.6
2220 Male, age 76, midline 71.6
Periaquaductal grey, anterior
nTPM: 84.4
1795 Male, age 51, unknown 93.5
1947 Male, age 18, unknown 84.7
2502 Female, age 75, unknown 75.0
Periaquaductal grey, dorsal
nTPM: 95.7
2850 Male, age 76, both hemispheres 120.3
1840 Male, age 53, unknown 93.6
1831 Male, age 72, unknown 91.5
2464 Female, age 72, unknown 77.5
Periaquaductal grey, lateral
nTPM: 89.1
2140 Male, age 76, both hemispheres 113.5
2053 Male, age 18, unknown 82.4
2272 Male, age 74, both hemispheres 71.4
Pretectal area
nTPM: 107.8
1944 Female, age 72, unknown 152.9
1816 Male, age 51, unknown 133.9
1817 Female, age 42, unknown 124.3
2667 Female, age 75, unknown 118.1
2007 Male, age 72, unknown 111.5
1815 Male, age 53, unknown 110.5
2273 Male, age 74, both hemispheres 94.6
2407 Male, age 75, both hemispheres 91.7
2224 Female, age 72, unknown 87.1
2316 Male, age 76, right hemisphere 85.9
2825 Male, age 18, unknown 75.5
Red nucleus
nTPM: 83.2
1821 Female, age 72, unknown 100.8
2785 Male, age 18, unknown 98.6
2503 Female, age 72, unknown 97.2
1954 Female, age 42, unknown 92.1
2725 Female, age 75, unknown 89.2
1865 Male, age 51, unknown 85.1
2823 Male, age 76, right hemisphere 80.2
1904 Male, age 53, unknown 77.0
2769 Male, age 72, unknown 75.2
2227 Male, age 72, unknown 73.2
2588 Male, age 74, left hemisphere 70.2
2584 Male, age 75, left hemisphere 59.7
Substantia nigra
nTPM: 117.1
1941 Male, age 53, unknown 154.7
2241 Male, age 72, unknown 143.7
2665 Male, age 74, both hemispheres 136.2
1916 Female, age 42, unknown 132.9
1889 Female, age 72, unknown 123.7
1851 Male, age 51, unknown 105.3
2409 Female, age 72, unknown 96.8
2590 Female, age 75, unknown 95.5
2699 Male, age 18, unknown 92.6
2583 Male, age 75, right hemisphere 89.8
Superior colliculus
nTPM: 96.1
2087 Female, age 72, unknown 132.8
2261 Male, age 18, unknown 108.4
2668 Female, age 75, unknown 105.6
1913 Female, age 42, unknown 95.4
2664 Male, age 75, both hemispheres 95.3
1995 Male, age 72, unknown 94.4
1895 Male, age 76, right hemisphere 88.2
1796 Male, age 53, unknown 84.3
1839 Male, age 51, unknown 81.9
2587 Male, age 74, left hemisphere 75.1
Ventral tegmental area
nTPM: 90.2
2410 Female, age 72, unknown 116.0
1915 Female, age 42, unknown 96.9
2218 Male, age 76, both hemispheres 88.7
1942 Male, age 51, unknown 86.6
2021 Male, age 53, unknown 77.7
2223 Female, age 72, unknown 75.2

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 21.2
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 21.2
Samples: 183

Max nTPM: 99.3
Min nTPM: 4.9
Std nTPM: 13.9
Median nTPM: 16.3
GTEX-13O3O-0011-R2b-SM-5P9H1 60-69 years, female 99.3
GTEX-11NUK-0011-R2a-SM-GINAO 50-59 years, male 73.2
GTEX-QVJO-0011-R2A-SM-2S1QK 60-69 years, female 71.9
GTEX-13OW8-0011-R2a-SM-5L3G2 60-69 years, male 61.6
GTEX-13OVL-0011-R2b-SM-H65ZN 50-59 years, male 56.4
GTEX-13OW7-0011-R2b-SM-H6Q8E 50-59 years, male 54.1
GTEX-14PJO-0011-R2a-SM-5ZZVF 60-69 years, male 51.6
GTEX-14BIN-0011-R2a-SM-5S2RJ 50-59 years, female 50.6
GTEX-1R9PO-0011-R2a-SM-F2TBH 60-69 years, female 50.0
GTEX-15DCD-0011-R2b-SM-6LPIE 70-79 years, female 47.7
GTEX-ZZPT-0011-R2a-SM-GNTB1 50-59 years, male 47.3
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 138.5
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 138.5
FF:10158-103A5 76 years, female 138.5

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 132.9
Pig sample Sample description nTPM
Substantia nigra
nTPM: 112.9
Samples: 4

Max nTPM: 124.5
Min nTPM: 94.8
Sample A Female 110.7
Sample B Female 94.8
Sample C Male 121.5
Sample D Male 124.5
Midbrain
nTPM: 133.0
Samples: 4

Max nTPM: 176.8
Min nTPM: 103.5
Sample A Female 135.0
Sample B Female 103.5
Sample C Male 176.8
Sample D Male 116.5
Periaqueductal gray
nTPM: 104.2
Samples: 3

Max nTPM: 106.0
Min nTPM: 102.0
Sample B Female 104.6
Sample C Male 106.0
Sample D Male 102.0
Superior colliculi
nTPM: 122.3
Samples: 4

Max nTPM: 177.4
Min nTPM: 75.1
Sample A Female 103.5
Sample B Female 75.1
Sample C Male 177.4
Sample D Male 133.2

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 29.1
Mouse sample Sample description nTPM
Midbrain
nTPM: 29.1
Samples: 4

Max nTPM: 31.1
Min nTPM: 23.6
Sample A Male 23.6
Sample B Male 31.1
Sample C Female 30.5
Sample D Female 31.1

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 5.9
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 5.9
69526725 Antisense, RP_050421_01_E05, Mouse strain C57BL/6J (56 days, male) 6.1
74881517 Antisense, RP_060315_04_C05, Mouse strain C57BL/6J (56 days, male) 5.7

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