MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:59.8 nTPM
HPA Brain:23.8 nTPM
GTEx:59.8 nTPM
FANTOM5:102.3 Scaled Tags Per Million
Pig:6.8 nTPM
BRAIN - SINGLE CELL RNA EXPRESSION

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 23.8
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 19.2
1870 Female, age 42, unknown 26.3
2828 Female, age 72, unknown 21.6
2411 Female, age 72, unknown 20.5
2019 Male, age 18, unknown 19.4
1827 Male, age 72, unknown 19.0
1833 Male, age 53, unknown 19.0
2666 Male, age 74, left hemisphere 18.5
1830 Male, age 51, unknown 17.4
2219 Male, age 76, both hemispheres 17.3
2586 Male, age 75, left hemisphere 13.0
Dorsal raphe nucleus
nTPM: 21.6
2016 Female, age 72, unknown 22.6
2298 Female, age 72, unknown 22.6
1828 Male, age 53, unknown 22.2
2047 Male, age 72, unknown 20.8
2750 Male, age 76, both hemispheres 19.6
Inferior colliculus
nTPM: 19.2
1848 Female, age 42, unknown 22.5
1890 Male, age 53, unknown 19.5
2849 Male, age 72, unknown 17.8
2097 Female, age 72, unknown 16.9
Median raphe nucleus
nTPM: 19.4
2220 Male, age 76, midline 19.4
Periaquaductal grey, anterior
nTPM: 23.8
1947 Male, age 18, unknown 35.3
1795 Male, age 51, unknown 20.1
2502 Female, age 75, unknown 16.2
Periaquaductal grey, dorsal
nTPM: 20.0
2850 Male, age 76, both hemispheres 25.7
1840 Male, age 53, unknown 19.2
2464 Female, age 72, unknown 19.2
1831 Male, age 72, unknown 15.9
Periaquaductal grey, lateral
nTPM: 20.0
2272 Male, age 74, both hemispheres 21.6
2140 Male, age 76, both hemispheres 21.4
2053 Male, age 18, unknown 17.0
Pretectal area
nTPM: 21.4
2667 Female, age 75, unknown 27.1
2273 Male, age 74, both hemispheres 24.2
1817 Female, age 42, unknown 24.0
1815 Male, age 53, unknown 22.5
2407 Male, age 75, both hemispheres 21.6
2007 Male, age 72, unknown 20.5
2825 Male, age 18, unknown 20.1
1944 Female, age 72, unknown 19.7
2224 Female, age 72, unknown 18.8
2316 Male, age 76, right hemisphere 18.8
1816 Male, age 51, unknown 18.6
Red nucleus
nTPM: 22.6
1865 Male, age 51, unknown 29.1
1821 Female, age 72, unknown 28.0
1954 Female, age 42, unknown 27.4
2823 Male, age 76, right hemisphere 25.7
1904 Male, age 53, unknown 24.6
2503 Female, age 72, unknown 23.8
2769 Male, age 72, unknown 22.0
2725 Female, age 75, unknown 21.9
2227 Male, age 72, unknown 21.4
2785 Male, age 18, unknown 18.6
2584 Male, age 75, left hemisphere 15.4
2588 Male, age 74, left hemisphere 13.5
Substantia nigra
nTPM: 23.6
1916 Female, age 42, unknown 30.0
2409 Female, age 72, unknown 26.7
1851 Male, age 51, unknown 26.6
2241 Male, age 72, unknown 26.3
2699 Male, age 18, unknown 23.7
1941 Male, age 53, unknown 23.5
2590 Female, age 75, unknown 23.2
1889 Female, age 72, unknown 23.1
2665 Male, age 74, both hemispheres 17.6
2583 Male, age 75, right hemisphere 15.5
Superior colliculus
nTPM: 19.3
1995 Male, age 72, unknown 24.8
1913 Female, age 42, unknown 23.8
2668 Female, age 75, unknown 21.1
2587 Male, age 74, left hemisphere 20.7
1839 Male, age 51, unknown 19.6
1895 Male, age 76, right hemisphere 19.5
2261 Male, age 18, unknown 17.1
1796 Male, age 53, unknown 16.8
2087 Female, age 72, unknown 15.5
2664 Male, age 75, both hemispheres 14.4
Ventral tegmental area
nTPM: 22.8
2410 Female, age 72, unknown 28.1
1915 Female, age 42, unknown 26.9
2021 Male, age 53, unknown 20.9
2218 Male, age 76, both hemispheres 20.8
1942 Male, age 51, unknown 20.4
2223 Female, age 72, unknown 19.8

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 59.8
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 59.8
Samples: 183

Max nTPM: 488.4
Min nTPM: 25.4
Std nTPM: 44.3
Median nTPM: 50.7
GTEX-X4EP-0011-R2B-SM-3P625 60-69 years, female 488.4
GTEX-11TUW-0011-R2b-SM-DO92T 60-69 years, male 308.4
GTEX-12696-0011-R2b-SM-GHWPY 60-69 years, male 252.8
GTEX-1CB4J-0011-R2a-SM-9WG5N 60-69 years, male 212.9
GTEX-13OVJ-0011-R2b-SM-5L3GP 50-59 years, female 115.4
GTEX-WHSE-0011-R2A-SM-3P5ZL 20-29 years, male 112.0
GTEX-1O9I2-0011-R2b-SM-F3K53 50-59 years, male 110.5
GTEX-1N2EF-0011-R2b-SM-F6482 60-69 years, male 109.9
GTEX-1B8SG-0011-R2b-SM-79OOT 50-59 years, male 103.7
GTEX-14BIM-0011-R2b-SM-69LQ6 60-69 years, female 97.0
GTEX-1GZ2Q-0011-R2b-SM-9OSWO 40-49 years, male 96.2
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 102.3
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 102.3
FF:10158-103A5 76 years, female 102.3

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 6.8
Pig sample Sample description nTPM
Substantia nigra
nTPM: 6.2
Samples: 4

Max nTPM: 8.9
Min nTPM: 3.3
Sample A Female 3.3
Sample B Female 7.2
Sample C Male 5.3
Sample D Male 8.9
Midbrain
nTPM: 5.7
Samples: 4

Max nTPM: 6.2
Min nTPM: 5.2
Sample A Female 5.2
Sample B Female 6.2
Sample C Male 5.5
Sample D Male 5.9
Periaqueductal gray
nTPM: 6.6
Samples: 3

Max nTPM: 8.3
Min nTPM: 4.6
Sample B Female 6.8
Sample C Male 4.6
Sample D Male 8.3
Superior colliculi
nTPM: 6.8
Samples: 4

Max nTPM: 10.3
Min nTPM: 3.4
Sample A Female 3.4
Sample B Female 10.3
Sample C Male 8.0
Sample D Male 5.6

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